Strain Fitness in Rhodanobacter sp. FW510-T8 around OKGIIK_08555

Experiment: no stress control

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntOKGIIK_08550 and OKGIIK_08555 overlap by 8 nucleotidesOKGIIK_08555 and ccmA are separated by 61 nucleotidesccmA and ccmB are separated by 153 nucleotides OKGIIK_08550: OKGIIK_08550 - kynurenine 3-monooxygenase, at 1,871,336 to 1,872,790 _08550 OKGIIK_08555: OKGIIK_08555 - DUF3293 domain-containing protein, at 1,872,783 to 1,873,190 _08555 OKGIIK_08560: ccmA - cytochrome c biogenesis heme-transporting ATPase CcmA, at 1,873,252 to 1,873,887 ccmA OKGIIK_08565: ccmB - heme exporter protein CcmB, at 1,874,041 to 1,874,727 ccmB Position (kb) 1872 1873 1874Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1871.951 kb on + strand, within OKGIIK_08550at 1871.951 kb on + strand, within OKGIIK_08550at 1871.951 kb on + strand, within OKGIIK_08550at 1871.951 kb on + strand, within OKGIIK_08550at 1871.952 kb on - strand, within OKGIIK_08550at 1872.071 kb on + strand, within OKGIIK_08550at 1872.071 kb on + strand, within OKGIIK_08550at 1872.071 kb on + strand, within OKGIIK_08550at 1872.071 kb on + strand, within OKGIIK_08550at 1872.071 kb on + strand, within OKGIIK_08550at 1872.071 kb on + strand, within OKGIIK_08550at 1872.071 kb on + strand, within OKGIIK_08550at 1872.072 kb on - strand, within OKGIIK_08550at 1872.072 kb on - strand, within OKGIIK_08550at 1872.072 kb on - strand, within OKGIIK_08550at 1872.072 kb on - strand, within OKGIIK_08550at 1872.072 kb on - strand, within OKGIIK_08550at 1872.072 kb on - strand, within OKGIIK_08550at 1872.281 kb on + strand, within OKGIIK_08550at 1872.281 kb on + strand, within OKGIIK_08550at 1872.281 kb on + strand, within OKGIIK_08550at 1872.281 kb on + strand, within OKGIIK_08550at 1872.281 kb on + strand, within OKGIIK_08550at 1872.281 kb on + strand, within OKGIIK_08550at 1872.282 kb on - strand, within OKGIIK_08550at 1872.282 kb on - strand, within OKGIIK_08550at 1872.282 kb on - strand, within OKGIIK_08550at 1872.282 kb on - strand, within OKGIIK_08550at 1872.506 kb on + strand, within OKGIIK_08550at 1872.506 kb on + strand, within OKGIIK_08550at 1872.506 kb on + strand, within OKGIIK_08550at 1872.506 kb on + strand, within OKGIIK_08550at 1872.506 kb on + strand, within OKGIIK_08550at 1872.506 kb on + strand, within OKGIIK_08550at 1872.506 kb on + strand, within OKGIIK_08550at 1872.506 kb on + strand, within OKGIIK_08550at 1872.506 kb on + strand, within OKGIIK_08550at 1872.506 kb on + strand, within OKGIIK_08550at 1872.506 kb on + strand, within OKGIIK_08550at 1872.506 kb on + strand, within OKGIIK_08550at 1872.506 kb on + strand, within OKGIIK_08550at 1872.506 kb on + strand, within OKGIIK_08550at 1872.506 kb on + strand, within OKGIIK_08550at 1872.506 kb on + strand, within OKGIIK_08550at 1872.506 kb on + strand, within OKGIIK_08550at 1872.506 kb on + strand, within OKGIIK_08550at 1872.506 kb on + strand, within OKGIIK_08550at 1872.507 kb on - strand, within OKGIIK_08550at 1872.507 kb on - strand, within OKGIIK_08550at 1872.507 kb on - strand, within OKGIIK_08550at 1872.507 kb on - strand, within OKGIIK_08550at 1872.507 kb on - strand, within OKGIIK_08550at 1872.507 kb on - strand, within OKGIIK_08550at 1872.542 kb on + strand, within OKGIIK_08550at 1872.542 kb on + strand, within OKGIIK_08550at 1872.543 kb on - strand, within OKGIIK_08550at 1872.543 kb on - strand, within OKGIIK_08550at 1872.543 kb on - strand, within OKGIIK_08550at 1872.596 kb on + strand, within OKGIIK_08550at 1872.596 kb on + strand, within OKGIIK_08550at 1872.596 kb on + strand, within OKGIIK_08550at 1872.596 kb on + strand, within OKGIIK_08550at 1872.596 kb on + strand, within OKGIIK_08550at 1872.596 kb on + strand, within OKGIIK_08550at 1872.596 kb on + strand, within OKGIIK_08550at 1872.596 kb on + strand, within OKGIIK_08550at 1872.596 kb on + strand, within OKGIIK_08550at 1872.596 kb on + strand, within OKGIIK_08550at 1872.596 kb on + strand, within OKGIIK_08550at 1872.596 kb on + strand, within OKGIIK_08550at 1872.596 kb on + strand, within OKGIIK_08550at 1872.596 kb on + strand, within OKGIIK_08550at 1872.596 kb on + strand, within OKGIIK_08550at 1872.597 kb on - strand, within OKGIIK_08550at 1872.597 kb on - strand, within OKGIIK_08550at 1872.597 kb on - strand, within OKGIIK_08550at 1872.597 kb on - strand, within OKGIIK_08550at 1872.597 kb on - strand, within OKGIIK_08550at 1872.597 kb on - strand, within OKGIIK_08550at 1872.597 kb on - strand, within OKGIIK_08550at 1872.597 kb on - strand, within OKGIIK_08550at 1872.597 kb on - strand, within OKGIIK_08550at 1872.597 kb on - strand, within OKGIIK_08550at 1872.597 kb on - strand, within OKGIIK_08550at 1872.597 kb on - strand, within OKGIIK_08550at 1872.597 kb on - strand, within OKGIIK_08550at 1872.597 kb on - strand, within OKGIIK_08550at 1872.597 kb on - strand, within OKGIIK_08550at 1872.597 kb on - strand, within OKGIIK_08550at 1872.597 kb on - strand, within OKGIIK_08550at 1872.597 kb on - strand, within OKGIIK_08550at 1872.597 kb on - strand, within OKGIIK_08550at 1872.597 kb on - strand, within OKGIIK_08550at 1872.597 kb on - strand, within OKGIIK_08550at 1872.597 kb on - strand, within OKGIIK_08550at 1872.597 kb on - strand, within OKGIIK_08550at 1872.597 kb on - strand, within OKGIIK_08550at 1872.638 kb on + strand, within OKGIIK_08550at 1872.638 kb on + strand, within OKGIIK_08550at 1872.638 kb on + strand, within OKGIIK_08550at 1872.639 kb on - strand, within OKGIIK_08550at 1872.639 kb on - strand, within OKGIIK_08550at 1872.639 kb on - strand, within OKGIIK_08550at 1872.639 kb on - strand, within OKGIIK_08550at 1872.644 kb on + strand, within OKGIIK_08550at 1872.644 kb on + strand, within OKGIIK_08550at 1872.644 kb on + strand, within OKGIIK_08550at 1872.644 kb on + strand, within OKGIIK_08550at 1872.759 kb on + strandat 1872.759 kb on + strandat 1872.759 kb on + strandat 1872.759 kb on + strandat 1872.759 kb on + strandat 1872.759 kb on + strandat 1872.760 kb on - strandat 1872.760 kb on - strandat 1872.760 kb on - strandat 1872.822 kb on + strandat 1872.823 kb on - strandat 1872.823 kb on - strandat 1872.823 kb on - strandat 1872.823 kb on - strandat 1872.839 kb on + strand, within OKGIIK_08555at 1872.926 kb on + strand, within OKGIIK_08555at 1872.927 kb on - strand, within OKGIIK_08555at 1872.927 kb on - strand, within OKGIIK_08555at 1872.927 kb on - strand, within OKGIIK_08555at 1872.927 kb on - strand, within OKGIIK_08555at 1872.927 kb on - strand, within OKGIIK_08555at 1873.140 kb on + strand, within OKGIIK_08555at 1873.140 kb on + strand, within OKGIIK_08555at 1873.140 kb on + strand, within OKGIIK_08555at 1873.140 kb on + strand, within OKGIIK_08555at 1873.140 kb on + strand, within OKGIIK_08555at 1873.140 kb on + strand, within OKGIIK_08555at 1873.140 kb on + strand, within OKGIIK_08555at 1873.141 kb on - strand, within OKGIIK_08555at 1873.141 kb on - strand, within OKGIIK_08555at 1873.141 kb on - strand, within OKGIIK_08555at 1873.141 kb on - strand, within OKGIIK_08555at 1873.141 kb on - strand, within OKGIIK_08555at 1873.141 kb on - strand, within OKGIIK_08555at 1873.141 kb on - strand, within OKGIIK_08555at 1873.141 kb on - strand, within OKGIIK_08555at 1873.141 kb on - strand, within OKGIIK_08555at 1873.141 kb on - strand, within OKGIIK_08555at 1873.141 kb on - strand, within OKGIIK_08555at 1873.885 kb on + strandat 1873.885 kb on + strandat 1873.885 kb on + strandat 1873.885 kb on + strandat 1873.885 kb on + strandat 1873.885 kb on + strandat 1873.885 kb on + strandat 1873.885 kb on + strandat 1873.885 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction no stress control
remove
1,871,951 + OKGIIK_08550 0.42 -0.6
1,871,951 + OKGIIK_08550 0.42 +1.2
1,871,951 + OKGIIK_08550 0.42 -0.7
1,871,951 + OKGIIK_08550 0.42 -0.4
1,871,952 - OKGIIK_08550 0.42 +0.9
1,872,071 + OKGIIK_08550 0.51 -2.3
1,872,071 + OKGIIK_08550 0.51 +0.9
1,872,071 + OKGIIK_08550 0.51 -0.0
1,872,071 + OKGIIK_08550 0.51 -0.1
1,872,071 + OKGIIK_08550 0.51 +0.7
1,872,071 + OKGIIK_08550 0.51 -0.1
1,872,071 + OKGIIK_08550 0.51 +0.7
1,872,072 - OKGIIK_08550 0.51 +0.3
1,872,072 - OKGIIK_08550 0.51 +0.2
1,872,072 - OKGIIK_08550 0.51 +0.7
1,872,072 - OKGIIK_08550 0.51 -2.5
1,872,072 - OKGIIK_08550 0.51 +0.1
1,872,072 - OKGIIK_08550 0.51 -1.3
1,872,281 + OKGIIK_08550 0.65 +0.2
1,872,281 + OKGIIK_08550 0.65 -0.8
1,872,281 + OKGIIK_08550 0.65 -1.5
1,872,281 + OKGIIK_08550 0.65 -0.1
1,872,281 + OKGIIK_08550 0.65 -0.8
1,872,281 + OKGIIK_08550 0.65 -1.3
1,872,282 - OKGIIK_08550 0.65 +0.7
1,872,282 - OKGIIK_08550 0.65 +0.1
1,872,282 - OKGIIK_08550 0.65 -0.8
1,872,282 - OKGIIK_08550 0.65 +1.4
1,872,506 + OKGIIK_08550 0.80 +0.7
1,872,506 + OKGIIK_08550 0.80 -0.7
1,872,506 + OKGIIK_08550 0.80 +1.7
1,872,506 + OKGIIK_08550 0.80 -0.7
1,872,506 + OKGIIK_08550 0.80 -1.3
1,872,506 + OKGIIK_08550 0.80 +0.3
1,872,506 + OKGIIK_08550 0.80 +0.0
1,872,506 + OKGIIK_08550 0.80 -1.0
1,872,506 + OKGIIK_08550 0.80 +0.5
1,872,506 + OKGIIK_08550 0.80 +1.4
1,872,506 + OKGIIK_08550 0.80 +0.1
1,872,506 + OKGIIK_08550 0.80 -0.9
1,872,506 + OKGIIK_08550 0.80 +0.2
1,872,506 + OKGIIK_08550 0.80 -0.1
1,872,506 + OKGIIK_08550 0.80 +0.2
1,872,506 + OKGIIK_08550 0.80 -2.6
1,872,506 + OKGIIK_08550 0.80 -0.3
1,872,506 + OKGIIK_08550 0.80 +0.8
1,872,506 + OKGIIK_08550 0.80 -1.8
1,872,507 - OKGIIK_08550 0.80 -1.8
1,872,507 - OKGIIK_08550 0.80 -1.2
1,872,507 - OKGIIK_08550 0.80 -0.0
1,872,507 - OKGIIK_08550 0.80 -0.2
1,872,507 - OKGIIK_08550 0.80 -0.6
1,872,507 - OKGIIK_08550 0.80 +0.2
1,872,542 + OKGIIK_08550 0.83 -1.3
1,872,542 + OKGIIK_08550 0.83 +0.2
1,872,543 - OKGIIK_08550 0.83 +0.0
1,872,543 - OKGIIK_08550 0.83 +0.4
1,872,543 - OKGIIK_08550 0.83 -0.7
1,872,596 + OKGIIK_08550 0.87 -0.6
1,872,596 + OKGIIK_08550 0.87 -0.1
1,872,596 + OKGIIK_08550 0.87 -2.0
1,872,596 + OKGIIK_08550 0.87 +1.2
1,872,596 + OKGIIK_08550 0.87 -0.2
1,872,596 + OKGIIK_08550 0.87 +1.1
1,872,596 + OKGIIK_08550 0.87 -0.3
1,872,596 + OKGIIK_08550 0.87 +1.1
1,872,596 + OKGIIK_08550 0.87 -1.3
1,872,596 + OKGIIK_08550 0.87 +0.7
1,872,596 + OKGIIK_08550 0.87 -1.2
1,872,596 + OKGIIK_08550 0.87 -2.0
1,872,596 + OKGIIK_08550 0.87 -0.5
1,872,596 + OKGIIK_08550 0.87 +0.2
1,872,596 + OKGIIK_08550 0.87 -2.7
1,872,597 - OKGIIK_08550 0.87 -0.2
1,872,597 - OKGIIK_08550 0.87 +0.4
1,872,597 - OKGIIK_08550 0.87 -0.3
1,872,597 - OKGIIK_08550 0.87 +1.2
1,872,597 - OKGIIK_08550 0.87 -0.1
1,872,597 - OKGIIK_08550 0.87 +1.2
1,872,597 - OKGIIK_08550 0.87 +0.7
1,872,597 - OKGIIK_08550 0.87 -0.7
1,872,597 - OKGIIK_08550 0.87 +1.8
1,872,597 - OKGIIK_08550 0.87 -0.8
1,872,597 - OKGIIK_08550 0.87 -2.0
1,872,597 - OKGIIK_08550 0.87 +1.1
1,872,597 - OKGIIK_08550 0.87 -2.2
1,872,597 - OKGIIK_08550 0.87 -2.9
1,872,597 - OKGIIK_08550 0.87 +0.3
1,872,597 - OKGIIK_08550 0.87 -0.7
1,872,597 - OKGIIK_08550 0.87 -0.7
1,872,597 - OKGIIK_08550 0.87 +0.3
1,872,597 - OKGIIK_08550 0.87 -1.0
1,872,597 - OKGIIK_08550 0.87 +0.7
1,872,597 - OKGIIK_08550 0.87 +0.7
1,872,597 - OKGIIK_08550 0.87 +2.5
1,872,597 - OKGIIK_08550 0.87 +0.3
1,872,597 - OKGIIK_08550 0.87 -1.4
1,872,638 + OKGIIK_08550 0.89 +3.2
1,872,638 + OKGIIK_08550 0.89 +0.7
1,872,638 + OKGIIK_08550 0.89 +0.4
1,872,639 - OKGIIK_08550 0.90 -1.5
1,872,639 - OKGIIK_08550 0.90 -0.5
1,872,639 - OKGIIK_08550 0.90 -1.8
1,872,639 - OKGIIK_08550 0.90 -1.8
1,872,644 + OKGIIK_08550 0.90 -0.2
1,872,644 + OKGIIK_08550 0.90 +0.5
1,872,644 + OKGIIK_08550 0.90 -0.9
1,872,644 + OKGIIK_08550 0.90 -1.7
1,872,759 + +0.8
1,872,759 + -0.3
1,872,759 + +0.1
1,872,759 + +0.1
1,872,759 + -1.8
1,872,759 + +0.4
1,872,760 - +0.5
1,872,760 - +2.2
1,872,760 - +0.1
1,872,822 + +0.8
1,872,823 - -0.3
1,872,823 - -1.1
1,872,823 - -0.7
1,872,823 - -1.0
1,872,839 + OKGIIK_08555 0.14 +0.8
1,872,926 + OKGIIK_08555 0.35 -1.3
1,872,927 - OKGIIK_08555 0.35 -0.4
1,872,927 - OKGIIK_08555 0.35 -0.4
1,872,927 - OKGIIK_08555 0.35 -0.9
1,872,927 - OKGIIK_08555 0.35 -0.3
1,872,927 - OKGIIK_08555 0.35 +0.5
1,873,140 + OKGIIK_08555 0.88 -0.3
1,873,140 + OKGIIK_08555 0.88 +1.1
1,873,140 + OKGIIK_08555 0.88 -1.2
1,873,140 + OKGIIK_08555 0.88 -1.6
1,873,140 + OKGIIK_08555 0.88 -0.7
1,873,140 + OKGIIK_08555 0.88 +0.3
1,873,140 + OKGIIK_08555 0.88 -0.3
1,873,141 - OKGIIK_08555 0.88 -0.3
1,873,141 - OKGIIK_08555 0.88 +0.3
1,873,141 - OKGIIK_08555 0.88 -1.3
1,873,141 - OKGIIK_08555 0.88 -1.8
1,873,141 - OKGIIK_08555 0.88 -1.8
1,873,141 - OKGIIK_08555 0.88 -0.2
1,873,141 - OKGIIK_08555 0.88 +1.4
1,873,141 - OKGIIK_08555 0.88 -0.3
1,873,141 - OKGIIK_08555 0.88 -0.7
1,873,141 - OKGIIK_08555 0.88 -1.1
1,873,141 - OKGIIK_08555 0.88 -0.9
1,873,885 + +2.3
1,873,885 + -0.6
1,873,885 + -0.3
1,873,885 + -0.2
1,873,885 + +1.2
1,873,885 + +0.5
1,873,885 + -0.2
1,873,885 + +0.8
1,873,885 + -1.1

Or see this region's nucleotide sequence