Strain Fitness in Rhodanobacter sp. FW510-T8 around OKGIIK_07680

Experiment: no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntccoP and OKGIIK_07675 overlap by 17 nucleotidesOKGIIK_07675 and OKGIIK_07680 overlap by 4 nucleotidesOKGIIK_07680 and ccoS overlap by 4 nucleotidesccoS and OKGIIK_07690 overlap by 104 nucleotides OKGIIK_07670: ccoP - cytochrome-c oxidase, cbb3-type subunit III, at 1,695,724 to 1,696,635 ccoP OKGIIK_07675: OKGIIK_07675 - hypothetical protein, at 1,696,619 to 1,696,855 _07675 OKGIIK_07680: OKGIIK_07680 - ATPase P, at 1,696,852 to 1,699,110 _07680 OKGIIK_07685: ccoS - cbb3-type cytochrome oxidase assembly protein CcoS, at 1,699,107 to 1,699,349 ccoS OKGIIK_07690: OKGIIK_07690 - Acetyl-CoA hydrolase, at 1,699,246 to 1,701,243 _07690 Position (kb) 1696 1697 1698 1699 1700Strain fitness (log2 ratio) -2 -1 0 1 2at 1696.072 kb on + strand, within ccoPat 1696.073 kb on - strand, within ccoPat 1696.328 kb on - strand, within ccoPat 1696.469 kb on + strand, within ccoPat 1696.469 kb on + strand, within ccoPat 1696.469 kb on + strand, within ccoPat 1696.469 kb on + strand, within ccoPat 1696.469 kb on + strand, within ccoPat 1696.470 kb on - strand, within ccoPat 1696.588 kb on + strandat 1696.589 kb on - strandat 1696.594 kb on + strandat 1696.780 kb on + strand, within OKGIIK_07675at 1696.780 kb on + strand, within OKGIIK_07675at 1697.228 kb on - strand, within OKGIIK_07680at 1697.242 kb on + strand, within OKGIIK_07680at 1699.747 kb on + strand, within OKGIIK_07690at 1699.748 kb on + strand, within OKGIIK_07690at 1699.748 kb on + strand, within OKGIIK_07690at 1699.749 kb on - strand, within OKGIIK_07690at 1699.749 kb on - strand, within OKGIIK_07690at 1699.749 kb on - strand, within OKGIIK_07690at 1699.749 kb on - strand, within OKGIIK_07690at 1699.799 kb on + strand, within OKGIIK_07690at 1699.907 kb on + strand, within OKGIIK_07690at 1699.907 kb on + strand, within OKGIIK_07690at 1699.907 kb on + strand, within OKGIIK_07690at 1699.907 kb on + strand, within OKGIIK_07690at 1699.908 kb on - strand, within OKGIIK_07690at 1699.908 kb on - strand, within OKGIIK_07690at 1699.908 kb on - strand, within OKGIIK_07690at 1699.908 kb on - strand, within OKGIIK_07690at 1699.908 kb on - strand, within OKGIIK_07690at 1699.908 kb on - strand, within OKGIIK_07690at 1699.908 kb on - strand, within OKGIIK_07690at 1699.908 kb on - strand, within OKGIIK_07690at 1700.048 kb on + strand, within OKGIIK_07690at 1700.049 kb on - strand, within OKGIIK_07690

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Per-strain Table

Position Strand Gene LocusTag Fraction no stress control
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1,696,072 + ccoP OKGIIK_07670 0.38 -1.6
1,696,073 - ccoP OKGIIK_07670 0.38 +0.1
1,696,328 - ccoP OKGIIK_07670 0.66 -1.1
1,696,469 + ccoP OKGIIK_07670 0.82 -0.5
1,696,469 + ccoP OKGIIK_07670 0.82 -1.9
1,696,469 + ccoP OKGIIK_07670 0.82 -0.6
1,696,469 + ccoP OKGIIK_07670 0.82 -0.6
1,696,469 + ccoP OKGIIK_07670 0.82 +0.7
1,696,470 - ccoP OKGIIK_07670 0.82 +0.3
1,696,588 + -0.6
1,696,589 - -0.9
1,696,594 + +0.8
1,696,780 + OKGIIK_07675 0.68 -0.3
1,696,780 + OKGIIK_07675 0.68 +0.7
1,697,228 - OKGIIK_07680 0.17 -1.9
1,697,242 + OKGIIK_07680 0.17 -1.6
1,699,747 + OKGIIK_07690 0.25 +0.3
1,699,748 + OKGIIK_07690 0.25 -2.0
1,699,748 + OKGIIK_07690 0.25 -0.7
1,699,749 - OKGIIK_07690 0.25 +0.9
1,699,749 - OKGIIK_07690 0.25 -1.5
1,699,749 - OKGIIK_07690 0.25 -0.6
1,699,749 - OKGIIK_07690 0.25 +0.9
1,699,799 + OKGIIK_07690 0.28 +0.4
1,699,907 + OKGIIK_07690 0.33 -0.2
1,699,907 + OKGIIK_07690 0.33 +2.3
1,699,907 + OKGIIK_07690 0.33 -0.9
1,699,907 + OKGIIK_07690 0.33 -1.2
1,699,908 - OKGIIK_07690 0.33 +0.4
1,699,908 - OKGIIK_07690 0.33 -0.6
1,699,908 - OKGIIK_07690 0.33 +0.0
1,699,908 - OKGIIK_07690 0.33 +0.0
1,699,908 - OKGIIK_07690 0.33 -0.6
1,699,908 - OKGIIK_07690 0.33 +0.4
1,699,908 - OKGIIK_07690 0.33 +0.5
1,699,908 - OKGIIK_07690 0.33 +1.4
1,700,048 + OKGIIK_07690 0.40 +0.1
1,700,049 - OKGIIK_07690 0.40 -0.1

Or see this region's nucleotide sequence