Experiment: no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ccoP and OKGIIK_07675 overlap by 17 nucleotides OKGIIK_07675 and OKGIIK_07680 overlap by 4 nucleotides OKGIIK_07680 and ccoS overlap by 4 nucleotides ccoS and OKGIIK_07690 overlap by 104 nucleotides
OKGIIK_07670: ccoP - cytochrome-c oxidase, cbb3-type subunit III, at 1,695,724 to 1,696,635
ccoP
OKGIIK_07675: OKGIIK_07675 - hypothetical protein, at 1,696,619 to 1,696,855
_07675
OKGIIK_07680: OKGIIK_07680 - ATPase P, at 1,696,852 to 1,699,110
_07680
OKGIIK_07685: ccoS - cbb3-type cytochrome oxidase assembly protein CcoS, at 1,699,107 to 1,699,349
ccoS
OKGIIK_07690: OKGIIK_07690 - Acetyl-CoA hydrolase, at 1,699,246 to 1,701,243
_07690
Position (kb)
1696
1697
1698
1699
1700 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1696.072 kb on + strand, within ccoP at 1696.073 kb on - strand, within ccoP at 1696.328 kb on - strand, within ccoP at 1696.469 kb on + strand, within ccoP at 1696.469 kb on + strand, within ccoP at 1696.469 kb on + strand, within ccoP at 1696.469 kb on + strand, within ccoP at 1696.469 kb on + strand, within ccoP at 1696.470 kb on - strand, within ccoP at 1696.588 kb on + strand at 1696.589 kb on - strand at 1696.594 kb on + strand at 1696.780 kb on + strand, within OKGIIK_07675 at 1696.780 kb on + strand, within OKGIIK_07675 at 1697.228 kb on - strand, within OKGIIK_07680 at 1697.242 kb on + strand, within OKGIIK_07680 at 1699.747 kb on + strand, within OKGIIK_07690 at 1699.748 kb on + strand, within OKGIIK_07690 at 1699.748 kb on + strand, within OKGIIK_07690 at 1699.749 kb on - strand, within OKGIIK_07690 at 1699.749 kb on - strand, within OKGIIK_07690 at 1699.749 kb on - strand, within OKGIIK_07690 at 1699.749 kb on - strand, within OKGIIK_07690 at 1699.799 kb on + strand, within OKGIIK_07690 at 1699.907 kb on + strand, within OKGIIK_07690 at 1699.907 kb on + strand, within OKGIIK_07690 at 1699.907 kb on + strand, within OKGIIK_07690 at 1699.907 kb on + strand, within OKGIIK_07690 at 1699.908 kb on - strand, within OKGIIK_07690 at 1699.908 kb on - strand, within OKGIIK_07690 at 1699.908 kb on - strand, within OKGIIK_07690 at 1699.908 kb on - strand, within OKGIIK_07690 at 1699.908 kb on - strand, within OKGIIK_07690 at 1699.908 kb on - strand, within OKGIIK_07690 at 1699.908 kb on - strand, within OKGIIK_07690 at 1699.908 kb on - strand, within OKGIIK_07690 at 1700.048 kb on + strand, within OKGIIK_07690 at 1700.049 kb on - strand, within OKGIIK_07690
Per-strain Table
Position Strand Gene LocusTag Fraction no stress control remove 1,696,072 + ccoP OKGIIK_07670 0.38 -1.6 1,696,073 - ccoP OKGIIK_07670 0.38 +0.1 1,696,328 - ccoP OKGIIK_07670 0.66 -1.1 1,696,469 + ccoP OKGIIK_07670 0.82 -0.5 1,696,469 + ccoP OKGIIK_07670 0.82 -1.9 1,696,469 + ccoP OKGIIK_07670 0.82 -0.6 1,696,469 + ccoP OKGIIK_07670 0.82 -0.6 1,696,469 + ccoP OKGIIK_07670 0.82 +0.7 1,696,470 - ccoP OKGIIK_07670 0.82 +0.3 1,696,588 + -0.6 1,696,589 - -0.9 1,696,594 + +0.8 1,696,780 + OKGIIK_07675 0.68 -0.3 1,696,780 + OKGIIK_07675 0.68 +0.7 1,697,228 - OKGIIK_07680 0.17 -1.9 1,697,242 + OKGIIK_07680 0.17 -1.6 1,699,747 + OKGIIK_07690 0.25 +0.3 1,699,748 + OKGIIK_07690 0.25 -2.0 1,699,748 + OKGIIK_07690 0.25 -0.7 1,699,749 - OKGIIK_07690 0.25 +0.9 1,699,749 - OKGIIK_07690 0.25 -1.5 1,699,749 - OKGIIK_07690 0.25 -0.6 1,699,749 - OKGIIK_07690 0.25 +0.9 1,699,799 + OKGIIK_07690 0.28 +0.4 1,699,907 + OKGIIK_07690 0.33 -0.2 1,699,907 + OKGIIK_07690 0.33 +2.3 1,699,907 + OKGIIK_07690 0.33 -0.9 1,699,907 + OKGIIK_07690 0.33 -1.2 1,699,908 - OKGIIK_07690 0.33 +0.4 1,699,908 - OKGIIK_07690 0.33 -0.6 1,699,908 - OKGIIK_07690 0.33 +0.0 1,699,908 - OKGIIK_07690 0.33 +0.0 1,699,908 - OKGIIK_07690 0.33 -0.6 1,699,908 - OKGIIK_07690 0.33 +0.4 1,699,908 - OKGIIK_07690 0.33 +0.5 1,699,908 - OKGIIK_07690 0.33 +1.4 1,700,048 + OKGIIK_07690 0.40 +0.1 1,700,049 - OKGIIK_07690 0.40 -0.1
Or see this region's nucleotide sequence