Strain Fitness in Rhodanobacter sp. FW510-T8 around OKGIIK_05610

Experiment: no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 nthisS and hutH are separated by 62 nucleotideshutH and OKGIIK_05615 are separated by 28 nucleotidesOKGIIK_05615 and rfaF are separated by 82 nucleotides OKGIIK_05605: hisS - histidine--tRNA ligase, at 1,235,441 to 1,236,820 hisS OKGIIK_05610: hutH - histidine ammonia-lyase, at 1,236,883 to 1,238,784 hutH OKGIIK_05615: OKGIIK_05615 - DUF6165 domain-containing protein, at 1,238,813 to 1,239,211 _05615 OKGIIK_05620: rfaF - ADP-heptose--LPS heptosyltransferase, at 1,239,294 to 1,240,352 rfaF Position (kb) 1236 1237 1238 1239Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1236.897 kb on + strandat 1236.897 kb on + strandat 1237.051 kb on + strandat 1237.051 kb on + strandat 1237.051 kb on + strandat 1237.052 kb on - strandat 1237.052 kb on - strandat 1237.199 kb on + strand, within hutHat 1237.199 kb on + strand, within hutHat 1237.199 kb on + strand, within hutHat 1237.199 kb on + strand, within hutHat 1237.199 kb on + strand, within hutHat 1237.200 kb on - strand, within hutHat 1237.200 kb on - strand, within hutHat 1237.435 kb on + strand, within hutHat 1237.436 kb on - strand, within hutHat 1237.436 kb on - strand, within hutHat 1237.436 kb on - strand, within hutHat 1237.753 kb on + strand, within hutHat 1237.753 kb on + strand, within hutHat 1237.754 kb on - strand, within hutHat 1237.754 kb on - strand, within hutHat 1237.882 kb on + strand, within hutHat 1237.882 kb on + strand, within hutHat 1237.882 kb on + strand, within hutHat 1237.882 kb on + strand, within hutHat 1237.882 kb on + strand, within hutHat 1237.882 kb on + strand, within hutHat 1237.883 kb on - strand, within hutHat 1237.883 kb on - strand, within hutHat 1237.883 kb on - strand, within hutHat 1237.936 kb on + strand, within hutHat 1237.936 kb on + strand, within hutHat 1237.936 kb on + strand, within hutHat 1237.936 kb on + strand, within hutHat 1237.936 kb on + strand, within hutHat 1237.936 kb on + strand, within hutHat 1237.936 kb on + strand, within hutHat 1237.936 kb on + strand, within hutHat 1237.936 kb on + strand, within hutHat 1237.936 kb on + strand, within hutHat 1237.936 kb on + strand, within hutHat 1237.937 kb on - strand, within hutHat 1237.937 kb on - strand, within hutHat 1237.937 kb on - strand, within hutHat 1237.937 kb on - strand, within hutHat 1238.137 kb on + strand, within hutHat 1238.137 kb on + strand, within hutHat 1238.137 kb on + strand, within hutHat 1238.137 kb on + strand, within hutHat 1238.137 kb on + strand, within hutHat 1238.137 kb on + strand, within hutHat 1238.137 kb on + strand, within hutHat 1238.137 kb on + strand, within hutHat 1238.137 kb on + strand, within hutHat 1238.137 kb on + strand, within hutHat 1238.137 kb on + strand, within hutHat 1238.137 kb on + strand, within hutHat 1238.137 kb on + strand, within hutHat 1238.137 kb on + strand, within hutHat 1238.137 kb on + strand, within hutHat 1238.138 kb on - strand, within hutHat 1238.138 kb on - strand, within hutHat 1238.138 kb on - strand, within hutHat 1238.138 kb on - strand, within hutHat 1238.138 kb on - strand, within hutHat 1238.138 kb on - strand, within hutHat 1238.138 kb on - strand, within hutHat 1238.138 kb on - strand, within hutHat 1238.138 kb on - strand, within hutHat 1238.138 kb on - strand, within hutHat 1238.138 kb on - strand, within hutHat 1238.138 kb on - strand, within hutHat 1238.138 kb on - strand, within hutHat 1238.281 kb on + strand, within hutHat 1238.281 kb on + strand, within hutHat 1238.281 kb on + strand, within hutHat 1238.281 kb on + strand, within hutHat 1238.281 kb on + strand, within hutHat 1238.281 kb on + strand, within hutHat 1238.281 kb on + strand, within hutHat 1238.282 kb on - strand, within hutHat 1238.282 kb on - strand, within hutHat 1238.282 kb on - strand, within hutHat 1238.282 kb on - strand, within hutHat 1238.282 kb on - strand, within hutHat 1238.282 kb on - strand, within hutHat 1238.282 kb on - strand, within hutHat 1238.282 kb on - strand, within hutHat 1238.282 kb on - strand, within hutHat 1238.338 kb on + strand, within hutHat 1238.338 kb on + strand, within hutHat 1238.338 kb on + strand, within hutHat 1238.338 kb on + strand, within hutHat 1238.338 kb on + strand, within hutHat 1238.338 kb on + strand, within hutHat 1238.338 kb on + strand, within hutHat 1238.339 kb on - strand, within hutHat 1238.339 kb on - strand, within hutHat 1238.339 kb on - strand, within hutHat 1238.339 kb on - strand, within hutHat 1238.339 kb on - strand, within hutHat 1238.339 kb on - strand, within hutHat 1238.339 kb on - strand, within hutHat 1238.452 kb on + strand, within hutHat 1238.452 kb on + strand, within hutHat 1238.452 kb on + strand, within hutHat 1238.452 kb on + strand, within hutHat 1238.452 kb on + strand, within hutHat 1238.452 kb on + strand, within hutHat 1238.452 kb on + strand, within hutHat 1238.453 kb on - strand, within hutHat 1238.453 kb on - strand, within hutHat 1238.453 kb on - strand, within hutHat 1238.453 kb on - strand, within hutHat 1238.453 kb on - strand, within hutHat 1238.453 kb on - strand, within hutHat 1238.582 kb on - strand, within hutHat 1239.107 kb on + strand, within OKGIIK_05615at 1239.107 kb on + strand, within OKGIIK_05615at 1239.107 kb on + strand, within OKGIIK_05615at 1239.107 kb on + strand, within OKGIIK_05615at 1239.107 kb on + strand, within OKGIIK_05615at 1239.107 kb on + strand, within OKGIIK_05615at 1239.107 kb on + strand, within OKGIIK_05615at 1239.108 kb on - strand, within OKGIIK_05615at 1239.108 kb on - strand, within OKGIIK_05615at 1239.108 kb on - strand, within OKGIIK_05615at 1239.108 kb on - strand, within OKGIIK_05615at 1239.108 kb on - strand, within OKGIIK_05615at 1239.108 kb on - strand, within OKGIIK_05615at 1239.198 kb on - strandat 1239.223 kb on - strandat 1239.295 kb on + strandat 1239.295 kb on + strandat 1239.295 kb on + strandat 1239.295 kb on + strandat 1239.295 kb on + strandat 1239.295 kb on + strandat 1239.295 kb on + strandat 1239.295 kb on + strandat 1239.328 kb on + strandat 1239.328 kb on + strandat 1239.445 kb on + strand, within rfaFat 1239.445 kb on + strand, within rfaFat 1239.445 kb on + strand, within rfaFat 1239.445 kb on + strand, within rfaFat 1239.445 kb on + strand, within rfaFat 1239.445 kb on + strand, within rfaFat 1239.446 kb on - strand, within rfaFat 1239.446 kb on - strand, within rfaFat 1239.446 kb on - strand, within rfaFat 1239.446 kb on - strand, within rfaFat 1239.446 kb on - strand, within rfaFat 1239.446 kb on - strand, within rfaFat 1239.446 kb on - strand, within rfaFat 1239.475 kb on + strand, within rfaFat 1239.475 kb on + strand, within rfaFat 1239.476 kb on - strand, within rfaFat 1239.476 kb on - strand, within rfaFat 1239.757 kb on + strand, within rfaFat 1239.757 kb on + strand, within rfaFat 1239.758 kb on - strand, within rfaF

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Per-strain Table

Position Strand Gene LocusTag Fraction no stress control
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1,236,897 + -1.9
1,236,897 + +0.1
1,237,051 + +1.2
1,237,051 + -0.3
1,237,051 + -0.3
1,237,052 - -0.9
1,237,052 - -0.5
1,237,199 + hutH OKGIIK_05610 0.17 -1.0
1,237,199 + hutH OKGIIK_05610 0.17 -0.1
1,237,199 + hutH OKGIIK_05610 0.17 -0.4
1,237,199 + hutH OKGIIK_05610 0.17 +0.1
1,237,199 + hutH OKGIIK_05610 0.17 -1.3
1,237,200 - hutH OKGIIK_05610 0.17 -0.1
1,237,200 - hutH OKGIIK_05610 0.17 +0.5
1,237,435 + hutH OKGIIK_05610 0.29 -0.3
1,237,436 - hutH OKGIIK_05610 0.29 +0.4
1,237,436 - hutH OKGIIK_05610 0.29 -1.7
1,237,436 - hutH OKGIIK_05610 0.29 +0.3
1,237,753 + hutH OKGIIK_05610 0.46 +0.1
1,237,753 + hutH OKGIIK_05610 0.46 -0.1
1,237,754 - hutH OKGIIK_05610 0.46 -0.5
1,237,754 - hutH OKGIIK_05610 0.46 -0.3
1,237,882 + hutH OKGIIK_05610 0.53 +0.1
1,237,882 + hutH OKGIIK_05610 0.53 +0.5
1,237,882 + hutH OKGIIK_05610 0.53 +0.5
1,237,882 + hutH OKGIIK_05610 0.53 -1.2
1,237,882 + hutH OKGIIK_05610 0.53 -0.7
1,237,882 + hutH OKGIIK_05610 0.53 -0.1
1,237,883 - hutH OKGIIK_05610 0.53 -0.1
1,237,883 - hutH OKGIIK_05610 0.53 -1.8
1,237,883 - hutH OKGIIK_05610 0.53 +2.0
1,237,936 + hutH OKGIIK_05610 0.55 -1.2
1,237,936 + hutH OKGIIK_05610 0.55 -0.0
1,237,936 + hutH OKGIIK_05610 0.55 +0.6
1,237,936 + hutH OKGIIK_05610 0.55 -1.2
1,237,936 + hutH OKGIIK_05610 0.55 -0.2
1,237,936 + hutH OKGIIK_05610 0.55 +0.8
1,237,936 + hutH OKGIIK_05610 0.55 -1.5
1,237,936 + hutH OKGIIK_05610 0.55 +0.5
1,237,936 + hutH OKGIIK_05610 0.55 -0.7
1,237,936 + hutH OKGIIK_05610 0.55 +0.1
1,237,936 + hutH OKGIIK_05610 0.55 -1.2
1,237,937 - hutH OKGIIK_05610 0.55 -0.7
1,237,937 - hutH OKGIIK_05610 0.55 -0.6
1,237,937 - hutH OKGIIK_05610 0.55 +0.8
1,237,937 - hutH OKGIIK_05610 0.55 +1.2
1,238,137 + hutH OKGIIK_05610 0.66 -0.5
1,238,137 + hutH OKGIIK_05610 0.66 +0.8
1,238,137 + hutH OKGIIK_05610 0.66 -1.7
1,238,137 + hutH OKGIIK_05610 0.66 -0.3
1,238,137 + hutH OKGIIK_05610 0.66 -0.9
1,238,137 + hutH OKGIIK_05610 0.66 -0.2
1,238,137 + hutH OKGIIK_05610 0.66 +0.2
1,238,137 + hutH OKGIIK_05610 0.66 -0.2
1,238,137 + hutH OKGIIK_05610 0.66 +0.7
1,238,137 + hutH OKGIIK_05610 0.66 -0.9
1,238,137 + hutH OKGIIK_05610 0.66 -2.2
1,238,137 + hutH OKGIIK_05610 0.66 -0.9
1,238,137 + hutH OKGIIK_05610 0.66 -1.9
1,238,137 + hutH OKGIIK_05610 0.66 +0.1
1,238,137 + hutH OKGIIK_05610 0.66 -1.5
1,238,138 - hutH OKGIIK_05610 0.66 +0.3
1,238,138 - hutH OKGIIK_05610 0.66 +0.7
1,238,138 - hutH OKGIIK_05610 0.66 -0.3
1,238,138 - hutH OKGIIK_05610 0.66 -0.8
1,238,138 - hutH OKGIIK_05610 0.66 -0.7
1,238,138 - hutH OKGIIK_05610 0.66 -1.3
1,238,138 - hutH OKGIIK_05610 0.66 -0.3
1,238,138 - hutH OKGIIK_05610 0.66 -1.3
1,238,138 - hutH OKGIIK_05610 0.66 -1.5
1,238,138 - hutH OKGIIK_05610 0.66 -0.9
1,238,138 - hutH OKGIIK_05610 0.66 +0.7
1,238,138 - hutH OKGIIK_05610 0.66 -0.6
1,238,138 - hutH OKGIIK_05610 0.66 -0.0
1,238,281 + hutH OKGIIK_05610 0.74 +0.7
1,238,281 + hutH OKGIIK_05610 0.74 -0.7
1,238,281 + hutH OKGIIK_05610 0.74 -0.9
1,238,281 + hutH OKGIIK_05610 0.74 +0.7
1,238,281 + hutH OKGIIK_05610 0.74 +1.2
1,238,281 + hutH OKGIIK_05610 0.74 -0.9
1,238,281 + hutH OKGIIK_05610 0.74 +1.0
1,238,282 - hutH OKGIIK_05610 0.74 +0.7
1,238,282 - hutH OKGIIK_05610 0.74 +0.1
1,238,282 - hutH OKGIIK_05610 0.74 +0.1
1,238,282 - hutH OKGIIK_05610 0.74 -0.3
1,238,282 - hutH OKGIIK_05610 0.74 -1.2
1,238,282 - hutH OKGIIK_05610 0.74 -0.2
1,238,282 - hutH OKGIIK_05610 0.74 -0.3
1,238,282 - hutH OKGIIK_05610 0.74 -1.4
1,238,282 - hutH OKGIIK_05610 0.74 +0.4
1,238,338 + hutH OKGIIK_05610 0.76 +0.1
1,238,338 + hutH OKGIIK_05610 0.76 +0.5
1,238,338 + hutH OKGIIK_05610 0.76 -0.5
1,238,338 + hutH OKGIIK_05610 0.76 -1.7
1,238,338 + hutH OKGIIK_05610 0.76 -0.3
1,238,338 + hutH OKGIIK_05610 0.76 +1.4
1,238,338 + hutH OKGIIK_05610 0.76 -0.9
1,238,339 - hutH OKGIIK_05610 0.77 -0.2
1,238,339 - hutH OKGIIK_05610 0.77 -0.7
1,238,339 - hutH OKGIIK_05610 0.77 +1.1
1,238,339 - hutH OKGIIK_05610 0.77 -0.3
1,238,339 - hutH OKGIIK_05610 0.77 -0.9
1,238,339 - hutH OKGIIK_05610 0.77 +1.2
1,238,339 - hutH OKGIIK_05610 0.77 -0.2
1,238,452 + hutH OKGIIK_05610 0.82 +0.2
1,238,452 + hutH OKGIIK_05610 0.82 -0.5
1,238,452 + hutH OKGIIK_05610 0.82 -1.3
1,238,452 + hutH OKGIIK_05610 0.82 -1.5
1,238,452 + hutH OKGIIK_05610 0.82 -0.0
1,238,452 + hutH OKGIIK_05610 0.82 -2.0
1,238,452 + hutH OKGIIK_05610 0.82 -2.4
1,238,453 - hutH OKGIIK_05610 0.83 -1.0
1,238,453 - hutH OKGIIK_05610 0.83 +0.9
1,238,453 - hutH OKGIIK_05610 0.83 -1.2
1,238,453 - hutH OKGIIK_05610 0.83 +0.2
1,238,453 - hutH OKGIIK_05610 0.83 +0.7
1,238,453 - hutH OKGIIK_05610 0.83 +0.3
1,238,582 - hutH OKGIIK_05610 0.89 +0.6
1,239,107 + OKGIIK_05615 0.74 -1.8
1,239,107 + OKGIIK_05615 0.74 -1.8
1,239,107 + OKGIIK_05615 0.74 +0.1
1,239,107 + OKGIIK_05615 0.74 -1.2
1,239,107 + OKGIIK_05615 0.74 -1.6
1,239,107 + OKGIIK_05615 0.74 -0.9
1,239,107 + OKGIIK_05615 0.74 -1.3
1,239,108 - OKGIIK_05615 0.74 -1.9
1,239,108 - OKGIIK_05615 0.74 +0.1
1,239,108 - OKGIIK_05615 0.74 +0.7
1,239,108 - OKGIIK_05615 0.74 -1.0
1,239,108 - OKGIIK_05615 0.74 -2.2
1,239,108 - OKGIIK_05615 0.74 -0.2
1,239,198 - -0.7
1,239,223 - +0.4
1,239,295 + -1.5
1,239,295 + +0.3
1,239,295 + +0.1
1,239,295 + +0.7
1,239,295 + -0.3
1,239,295 + -1.3
1,239,295 + +0.4
1,239,295 + -1.2
1,239,328 + -0.9
1,239,328 + -0.9
1,239,445 + rfaF OKGIIK_05620 0.14 -0.7
1,239,445 + rfaF OKGIIK_05620 0.14 -0.9
1,239,445 + rfaF OKGIIK_05620 0.14 -1.8
1,239,445 + rfaF OKGIIK_05620 0.14 -1.2
1,239,445 + rfaF OKGIIK_05620 0.14 -2.8
1,239,445 + rfaF OKGIIK_05620 0.14 -0.9
1,239,446 - rfaF OKGIIK_05620 0.14 -0.9
1,239,446 - rfaF OKGIIK_05620 0.14 -1.3
1,239,446 - rfaF OKGIIK_05620 0.14 -1.6
1,239,446 - rfaF OKGIIK_05620 0.14 -2.0
1,239,446 - rfaF OKGIIK_05620 0.14 -0.3
1,239,446 - rfaF OKGIIK_05620 0.14 -0.3
1,239,446 - rfaF OKGIIK_05620 0.14 -1.3
1,239,475 + rfaF OKGIIK_05620 0.17 -1.4
1,239,475 + rfaF OKGIIK_05620 0.17 -0.2
1,239,476 - rfaF OKGIIK_05620 0.17 -1.3
1,239,476 - rfaF OKGIIK_05620 0.17 -1.8
1,239,757 + rfaF OKGIIK_05620 0.44 -0.8
1,239,757 + rfaF OKGIIK_05620 0.44 -2.4
1,239,758 - rfaF OKGIIK_05620 0.44 +0.3

Or see this region's nucleotide sequence