Experiment: no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OKGIIK_04235 and OKGIIK_04240 are separated by 11 nucleotides OKGIIK_04240 and OKGIIK_04245 are separated by 148 nucleotides OKGIIK_04245 and OKGIIK_04250 are separated by 299 nucleotides
OKGIIK_04235: OKGIIK_04235 - Diguanylate cyclase, at 925,375 to 927,156
_04235
OKGIIK_04240: OKGIIK_04240 - hypothetical protein, at 927,168 to 927,395
_04240
OKGIIK_04245: OKGIIK_04245 - TP-methylase domain-containing protein, at 927,544 to 928,371
_04245
OKGIIK_04250: OKGIIK_04250 - Methyltransferase, at 928,671 to 929,513
_04250
Position (kb) 927
928
929 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 926.556 kb on + strand, within OKGIIK_04235 at 926.557 kb on - strand, within OKGIIK_04235 at 926.557 kb on - strand, within OKGIIK_04235 at 926.558 kb on + strand, within OKGIIK_04235 at 926.558 kb on + strand, within OKGIIK_04235 at 926.558 kb on + strand, within OKGIIK_04235 at 926.558 kb on + strand, within OKGIIK_04235 at 926.558 kb on + strand, within OKGIIK_04235 at 926.558 kb on + strand, within OKGIIK_04235 at 926.559 kb on - strand, within OKGIIK_04235 at 926.559 kb on - strand, within OKGIIK_04235 at 926.559 kb on - strand, within OKGIIK_04235 at 926.559 kb on - strand, within OKGIIK_04235 at 926.559 kb on - strand, within OKGIIK_04235 at 926.559 kb on - strand, within OKGIIK_04235 at 926.559 kb on - strand, within OKGIIK_04235 at 926.588 kb on + strand, within OKGIIK_04235 at 926.588 kb on + strand, within OKGIIK_04235 at 926.588 kb on + strand, within OKGIIK_04235 at 926.588 kb on + strand, within OKGIIK_04235 at 926.588 kb on + strand, within OKGIIK_04235 at 926.588 kb on + strand, within OKGIIK_04235 at 926.589 kb on - strand, within OKGIIK_04235 at 926.589 kb on - strand, within OKGIIK_04235 at 926.589 kb on - strand, within OKGIIK_04235 at 926.589 kb on - strand, within OKGIIK_04235 at 926.589 kb on - strand, within OKGIIK_04235 at 926.636 kb on + strand, within OKGIIK_04235 at 926.636 kb on + strand, within OKGIIK_04235 at 926.636 kb on + strand, within OKGIIK_04235 at 926.636 kb on + strand, within OKGIIK_04235 at 926.636 kb on + strand, within OKGIIK_04235 at 926.636 kb on + strand, within OKGIIK_04235 at 926.637 kb on - strand, within OKGIIK_04235 at 926.637 kb on - strand, within OKGIIK_04235 at 926.637 kb on - strand, within OKGIIK_04235 at 926.637 kb on - strand, within OKGIIK_04235 at 926.637 kb on - strand, within OKGIIK_04235 at 926.637 kb on - strand, within OKGIIK_04235 at 926.637 kb on - strand, within OKGIIK_04235 at 926.637 kb on - strand, within OKGIIK_04235 at 926.637 kb on - strand, within OKGIIK_04235 at 926.687 kb on + strand, within OKGIIK_04235 at 926.687 kb on + strand, within OKGIIK_04235 at 926.687 kb on + strand, within OKGIIK_04235 at 926.688 kb on - strand, within OKGIIK_04235 at 926.688 kb on - strand, within OKGIIK_04235 at 926.688 kb on - strand, within OKGIIK_04235 at 926.688 kb on - strand, within OKGIIK_04235 at 926.708 kb on - strand, within OKGIIK_04235 at 926.774 kb on + strand, within OKGIIK_04235 at 926.774 kb on + strand, within OKGIIK_04235 at 926.921 kb on + strand, within OKGIIK_04235 at 926.921 kb on + strand, within OKGIIK_04235 at 926.922 kb on - strand, within OKGIIK_04235 at 926.922 kb on - strand, within OKGIIK_04235 at 926.922 kb on - strand, within OKGIIK_04235 at 927.027 kb on + strand at 927.028 kb on - strand at 927.028 kb on - strand at 927.169 kb on + strand at 927.169 kb on + strand at 927.169 kb on + strand at 927.170 kb on - strand at 927.170 kb on - strand at 927.170 kb on - strand at 927.170 kb on - strand at 927.185 kb on + strand at 927.185 kb on + strand at 927.186 kb on - strand at 927.186 kb on - strand at 927.186 kb on - strand at 927.186 kb on - strand at 927.186 kb on - strand at 927.186 kb on - strand at 927.186 kb on - strand at 927.186 kb on - strand at 927.186 kb on - strand at 927.186 kb on - strand at 927.328 kb on - strand, within OKGIIK_04240 at 927.328 kb on - strand, within OKGIIK_04240 at 927.431 kb on + strand at 927.431 kb on + strand at 927.431 kb on + strand at 927.431 kb on + strand at 927.432 kb on - strand at 927.432 kb on - strand at 927.432 kb on - strand at 927.507 kb on + strand at 927.507 kb on + strand at 927.507 kb on + strand at 927.507 kb on + strand at 927.508 kb on - strand at 927.508 kb on - strand at 927.508 kb on - strand at 927.508 kb on - strand at 927.508 kb on - strand at 927.597 kb on + strand at 927.597 kb on + strand at 927.597 kb on + strand at 927.597 kb on + strand at 927.597 kb on + strand at 927.597 kb on + strand at 927.597 kb on + strand at 927.597 kb on + strand at 927.597 kb on + strand at 927.597 kb on + strand at 927.597 kb on + strand at 927.597 kb on + strand at 927.597 kb on + strand at 927.597 kb on + strand at 927.598 kb on - strand at 927.598 kb on - strand at 927.598 kb on - strand at 927.598 kb on - strand at 927.598 kb on - strand at 927.598 kb on - strand at 927.598 kb on - strand at 927.598 kb on - strand at 927.598 kb on - strand at 927.598 kb on - strand at 927.598 kb on - strand at 927.598 kb on - strand at 927.598 kb on - strand at 927.625 kb on + strand at 927.631 kb on + strand, within OKGIIK_04245 at 927.631 kb on + strand, within OKGIIK_04245 at 927.631 kb on + strand, within OKGIIK_04245 at 927.632 kb on - strand, within OKGIIK_04245 at 927.725 kb on + strand, within OKGIIK_04245 at 927.753 kb on - strand, within OKGIIK_04245 at 927.857 kb on + strand, within OKGIIK_04245 at 927.857 kb on + strand, within OKGIIK_04245 at 927.858 kb on - strand, within OKGIIK_04245 at 927.858 kb on - strand, within OKGIIK_04245 at 927.884 kb on + strand, within OKGIIK_04245 at 927.884 kb on + strand, within OKGIIK_04245 at 927.884 kb on + strand, within OKGIIK_04245 at 927.885 kb on - strand, within OKGIIK_04245 at 927.885 kb on - strand, within OKGIIK_04245 at 927.885 kb on - strand, within OKGIIK_04245 at 927.954 kb on - strand, within OKGIIK_04245 at 927.954 kb on - strand, within OKGIIK_04245 at 927.954 kb on - strand, within OKGIIK_04245 at 927.954 kb on - strand, within OKGIIK_04245 at 927.954 kb on - strand, within OKGIIK_04245 at 928.064 kb on + strand, within OKGIIK_04245 at 928.064 kb on + strand, within OKGIIK_04245 at 928.064 kb on + strand, within OKGIIK_04245 at 928.064 kb on + strand, within OKGIIK_04245 at 928.065 kb on - strand, within OKGIIK_04245 at 928.065 kb on - strand, within OKGIIK_04245 at 928.065 kb on - strand, within OKGIIK_04245 at 928.065 kb on - strand, within OKGIIK_04245 at 928.131 kb on - strand, within OKGIIK_04245 at 928.131 kb on - strand, within OKGIIK_04245 at 928.131 kb on - strand, within OKGIIK_04245 at 928.160 kb on + strand, within OKGIIK_04245 at 928.160 kb on + strand, within OKGIIK_04245 at 928.160 kb on + strand, within OKGIIK_04245 at 928.161 kb on - strand, within OKGIIK_04245 at 928.161 kb on - strand, within OKGIIK_04245 at 928.161 kb on - strand, within OKGIIK_04245 at 928.161 kb on - strand, within OKGIIK_04245 at 928.161 kb on - strand, within OKGIIK_04245 at 928.163 kb on + strand, within OKGIIK_04245 at 928.164 kb on - strand, within OKGIIK_04245 at 928.164 kb on - strand, within OKGIIK_04245 at 928.383 kb on + strand at 928.436 kb on + strand at 928.437 kb on - strand at 928.437 kb on - strand at 928.449 kb on + strand at 928.449 kb on + strand at 928.449 kb on + strand at 928.449 kb on + strand at 928.449 kb on + strand at 928.449 kb on + strand at 928.449 kb on + strand at 928.449 kb on + strand at 928.449 kb on + strand at 928.449 kb on + strand at 928.449 kb on + strand at 928.449 kb on + strand at 928.450 kb on - strand at 928.450 kb on - strand at 928.450 kb on - strand at 928.450 kb on - strand at 928.450 kb on - strand at 928.570 kb on + strand at 928.795 kb on + strand, within OKGIIK_04250 at 928.795 kb on + strand, within OKGIIK_04250 at 928.795 kb on + strand, within OKGIIK_04250 at 928.795 kb on + strand, within OKGIIK_04250 at 928.795 kb on + strand, within OKGIIK_04250 at 928.795 kb on + strand, within OKGIIK_04250 at 928.795 kb on + strand, within OKGIIK_04250 at 928.795 kb on + strand, within OKGIIK_04250 at 928.795 kb on + strand, within OKGIIK_04250 at 928.796 kb on - strand, within OKGIIK_04250 at 928.796 kb on - strand, within OKGIIK_04250 at 928.796 kb on - strand, within OKGIIK_04250 at 928.796 kb on - strand, within OKGIIK_04250 at 928.843 kb on + strand, within OKGIIK_04250 at 928.843 kb on + strand, within OKGIIK_04250 at 928.843 kb on + strand, within OKGIIK_04250 at 928.843 kb on + strand, within OKGIIK_04250 at 928.843 kb on + strand, within OKGIIK_04250 at 928.844 kb on - strand, within OKGIIK_04250 at 928.844 kb on - strand, within OKGIIK_04250 at 928.844 kb on - strand, within OKGIIK_04250 at 928.858 kb on + strand, within OKGIIK_04250 at 928.858 kb on + strand, within OKGIIK_04250 at 928.858 kb on + strand, within OKGIIK_04250 at 928.858 kb on + strand, within OKGIIK_04250 at 928.859 kb on - strand, within OKGIIK_04250 at 928.859 kb on - strand, within OKGIIK_04250 at 928.859 kb on - strand, within OKGIIK_04250 at 928.859 kb on - strand, within OKGIIK_04250 at 928.859 kb on - strand, within OKGIIK_04250 at 928.859 kb on - strand, within OKGIIK_04250 at 928.859 kb on - strand, within OKGIIK_04250 at 929.098 kb on + strand, within OKGIIK_04250 at 929.098 kb on + strand, within OKGIIK_04250 at 929.099 kb on - strand, within OKGIIK_04250 at 929.099 kb on - strand, within OKGIIK_04250 at 929.099 kb on - strand, within OKGIIK_04250 at 929.117 kb on + strand, within OKGIIK_04250 at 929.117 kb on + strand, within OKGIIK_04250 at 929.117 kb on + strand, within OKGIIK_04250 at 929.117 kb on + strand, within OKGIIK_04250 at 929.118 kb on - strand, within OKGIIK_04250 at 929.118 kb on - strand, within OKGIIK_04250 at 929.118 kb on - strand, within OKGIIK_04250 at 929.228 kb on + strand, within OKGIIK_04250 at 929.229 kb on - strand, within OKGIIK_04250 at 929.311 kb on + strand, within OKGIIK_04250 at 929.312 kb on - strand, within OKGIIK_04250 at 929.312 kb on - strand, within OKGIIK_04250 at 929.344 kb on + strand, within OKGIIK_04250
Per-strain Table
Position Strand Gene LocusTag Fraction no stress control remove 926,556 + OKGIIK_04235 0.66 +0.5 926,557 - OKGIIK_04235 0.66 -0.4 926,557 - OKGIIK_04235 0.66 -1.9 926,558 + OKGIIK_04235 0.66 -0.7 926,558 + OKGIIK_04235 0.66 +0.9 926,558 + OKGIIK_04235 0.66 +0.1 926,558 + OKGIIK_04235 0.66 +1.1 926,558 + OKGIIK_04235 0.66 -1.7 926,558 + OKGIIK_04235 0.66 -1.0 926,559 - OKGIIK_04235 0.66 +0.2 926,559 - OKGIIK_04235 0.66 +0.9 926,559 - OKGIIK_04235 0.66 +0.5 926,559 - OKGIIK_04235 0.66 -0.2 926,559 - OKGIIK_04235 0.66 -0.9 926,559 - OKGIIK_04235 0.66 +0.3 926,559 - OKGIIK_04235 0.66 -1.0 926,588 + OKGIIK_04235 0.68 +0.0 926,588 + OKGIIK_04235 0.68 -0.9 926,588 + OKGIIK_04235 0.68 -1.1 926,588 + OKGIIK_04235 0.68 +1.1 926,588 + OKGIIK_04235 0.68 -0.6 926,588 + OKGIIK_04235 0.68 -1.2 926,589 - OKGIIK_04235 0.68 +0.2 926,589 - OKGIIK_04235 0.68 +0.5 926,589 - OKGIIK_04235 0.68 -2.0 926,589 - OKGIIK_04235 0.68 -0.5 926,589 - OKGIIK_04235 0.68 -0.6 926,636 + OKGIIK_04235 0.71 -0.6 926,636 + OKGIIK_04235 0.71 +1.2 926,636 + OKGIIK_04235 0.71 +2.6 926,636 + OKGIIK_04235 0.71 +0.7 926,636 + OKGIIK_04235 0.71 -1.1 926,636 + OKGIIK_04235 0.71 +0.6 926,637 - OKGIIK_04235 0.71 +0.6 926,637 - OKGIIK_04235 0.71 -2.2 926,637 - OKGIIK_04235 0.71 -0.4 926,637 - OKGIIK_04235 0.71 +0.7 926,637 - OKGIIK_04235 0.71 -1.0 926,637 - OKGIIK_04235 0.71 +1.3 926,637 - OKGIIK_04235 0.71 -0.4 926,637 - OKGIIK_04235 0.71 -1.1 926,637 - OKGIIK_04235 0.71 -1.2 926,687 + OKGIIK_04235 0.74 +0.7 926,687 + OKGIIK_04235 0.74 +1.6 926,687 + OKGIIK_04235 0.74 +1.6 926,688 - OKGIIK_04235 0.74 +1.2 926,688 - OKGIIK_04235 0.74 -1.4 926,688 - OKGIIK_04235 0.74 +1.3 926,688 - OKGIIK_04235 0.74 -1.2 926,708 - OKGIIK_04235 0.75 -1.9 926,774 + OKGIIK_04235 0.79 +0.3 926,774 + OKGIIK_04235 0.79 -0.1 926,921 + OKGIIK_04235 0.87 +0.3 926,921 + OKGIIK_04235 0.87 +0.0 926,922 - OKGIIK_04235 0.87 -1.0 926,922 - OKGIIK_04235 0.87 -0.4 926,922 - OKGIIK_04235 0.87 -2.6 927,027 + -1.2 927,028 - +0.5 927,028 - -0.5 927,169 + -1.2 927,169 + -1.2 927,169 + -0.1 927,170 - -0.4 927,170 - -1.3 927,170 - +0.9 927,170 - -0.5 927,185 + -1.0 927,185 + +0.8 927,186 - +1.1 927,186 - +0.0 927,186 - -0.3 927,186 - -2.9 927,186 - +0.0 927,186 - +1.1 927,186 - +0.8 927,186 - -0.7 927,186 - +0.6 927,186 - -1.3 927,328 - OKGIIK_04240 0.70 -0.4 927,328 - OKGIIK_04240 0.70 +0.6 927,431 + +0.3 927,431 + +0.3 927,431 + -0.8 927,431 + +1.3 927,432 - -0.3 927,432 - -0.5 927,432 - +0.3 927,507 + -0.1 927,507 + +0.3 927,507 + -2.5 927,507 + +0.4 927,508 - -1.7 927,508 - -1.7 927,508 - +0.6 927,508 - -0.6 927,508 - -0.4 927,597 + -2.3 927,597 + -1.0 927,597 + +1.2 927,597 + +0.6 927,597 + +0.9 927,597 + -1.2 927,597 + +2.4 927,597 + -0.5 927,597 + +1.6 927,597 + +0.0 927,597 + +0.7 927,597 + +0.9 927,597 + -0.2 927,597 + +1.0 927,598 - +1.2 927,598 - +0.2 927,598 - -0.4 927,598 - +0.4 927,598 - +0.2 927,598 - +0.2 927,598 - +0.0 927,598 - -0.3 927,598 - +0.2 927,598 - -0.4 927,598 - -1.3 927,598 - -0.2 927,598 - -0.3 927,625 + +0.1 927,631 + OKGIIK_04245 0.11 +0.1 927,631 + OKGIIK_04245 0.11 +0.3 927,631 + OKGIIK_04245 0.11 -0.4 927,632 - OKGIIK_04245 0.11 +1.1 927,725 + OKGIIK_04245 0.22 -1.6 927,753 - OKGIIK_04245 0.25 -0.1 927,857 + OKGIIK_04245 0.38 +0.2 927,857 + OKGIIK_04245 0.38 +0.4 927,858 - OKGIIK_04245 0.38 +0.6 927,858 - OKGIIK_04245 0.38 +1.9 927,884 + OKGIIK_04245 0.41 -0.7 927,884 + OKGIIK_04245 0.41 +0.6 927,884 + OKGIIK_04245 0.41 +0.3 927,885 - OKGIIK_04245 0.41 +0.5 927,885 - OKGIIK_04245 0.41 +0.4 927,885 - OKGIIK_04245 0.41 -0.4 927,954 - OKGIIK_04245 0.50 +0.3 927,954 - OKGIIK_04245 0.50 -0.2 927,954 - OKGIIK_04245 0.50 +0.8 927,954 - OKGIIK_04245 0.50 +0.7 927,954 - OKGIIK_04245 0.50 -0.2 928,064 + OKGIIK_04245 0.63 +0.2 928,064 + OKGIIK_04245 0.63 +0.4 928,064 + OKGIIK_04245 0.63 -1.0 928,064 + OKGIIK_04245 0.63 -0.9 928,065 - OKGIIK_04245 0.63 -0.1 928,065 - OKGIIK_04245 0.63 -0.0 928,065 - OKGIIK_04245 0.63 -2.1 928,065 - OKGIIK_04245 0.63 +1.0 928,131 - OKGIIK_04245 0.71 +1.4 928,131 - OKGIIK_04245 0.71 -0.1 928,131 - OKGIIK_04245 0.71 +0.1 928,160 + OKGIIK_04245 0.74 -1.0 928,160 + OKGIIK_04245 0.74 -2.0 928,160 + OKGIIK_04245 0.74 -0.6 928,161 - OKGIIK_04245 0.75 -0.3 928,161 - OKGIIK_04245 0.75 -0.7 928,161 - OKGIIK_04245 0.75 +1.1 928,161 - OKGIIK_04245 0.75 -1.0 928,161 - OKGIIK_04245 0.75 -1.3 928,163 + OKGIIK_04245 0.75 -0.6 928,164 - OKGIIK_04245 0.75 -0.1 928,164 - OKGIIK_04245 0.75 +1.7 928,383 + -0.5 928,436 + +0.1 928,437 - -1.7 928,437 - +0.5 928,449 + +0.9 928,449 + -0.6 928,449 + -2.7 928,449 + -0.5 928,449 + -2.1 928,449 + -0.6 928,449 + -0.7 928,449 + -1.0 928,449 + +1.3 928,449 + -2.4 928,449 + -1.4 928,449 + -0.6 928,450 - +0.6 928,450 - -0.3 928,450 - -0.7 928,450 - +0.8 928,450 - -2.0 928,570 + +0.1 928,795 + OKGIIK_04250 0.15 -1.2 928,795 + OKGIIK_04250 0.15 -0.2 928,795 + OKGIIK_04250 0.15 +0.8 928,795 + OKGIIK_04250 0.15 -0.2 928,795 + OKGIIK_04250 0.15 -0.8 928,795 + OKGIIK_04250 0.15 +0.2 928,795 + OKGIIK_04250 0.15 -1.4 928,795 + OKGIIK_04250 0.15 -1.7 928,795 + OKGIIK_04250 0.15 +1.2 928,796 - OKGIIK_04250 0.15 -1.7 928,796 - OKGIIK_04250 0.15 -1.9 928,796 - OKGIIK_04250 0.15 -0.3 928,796 - OKGIIK_04250 0.15 +0.9 928,843 + OKGIIK_04250 0.20 -0.4 928,843 + OKGIIK_04250 0.20 -1.9 928,843 + OKGIIK_04250 0.20 +0.5 928,843 + OKGIIK_04250 0.20 +0.9 928,843 + OKGIIK_04250 0.20 +0.7 928,844 - OKGIIK_04250 0.21 +0.6 928,844 - OKGIIK_04250 0.21 +0.7 928,844 - OKGIIK_04250 0.21 -1.2 928,858 + OKGIIK_04250 0.22 +1.3 928,858 + OKGIIK_04250 0.22 +0.1 928,858 + OKGIIK_04250 0.22 +0.6 928,858 + OKGIIK_04250 0.22 +0.6 928,859 - OKGIIK_04250 0.22 -0.9 928,859 - OKGIIK_04250 0.22 -0.4 928,859 - OKGIIK_04250 0.22 -1.4 928,859 - OKGIIK_04250 0.22 +1.1 928,859 - OKGIIK_04250 0.22 -1.9 928,859 - OKGIIK_04250 0.22 -1.2 928,859 - OKGIIK_04250 0.22 -0.2 929,098 + OKGIIK_04250 0.51 +0.8 929,098 + OKGIIK_04250 0.51 -1.0 929,099 - OKGIIK_04250 0.51 -0.2 929,099 - OKGIIK_04250 0.51 -1.4 929,099 - OKGIIK_04250 0.51 +0.8 929,117 + OKGIIK_04250 0.53 +0.9 929,117 + OKGIIK_04250 0.53 -0.4 929,117 + OKGIIK_04250 0.53 +0.6 929,117 + OKGIIK_04250 0.53 +0.0 929,118 - OKGIIK_04250 0.53 +0.9 929,118 - OKGIIK_04250 0.53 -1.3 929,118 - OKGIIK_04250 0.53 -1.6 929,228 + OKGIIK_04250 0.66 -0.6 929,229 - OKGIIK_04250 0.66 -0.5 929,311 + OKGIIK_04250 0.76 -0.6 929,312 - OKGIIK_04250 0.76 -1.0 929,312 - OKGIIK_04250 0.76 +0.7 929,344 + OKGIIK_04250 0.80 -0.9
Or see this region's nucleotide sequence