Strain Fitness in Rhodanobacter sp. FW510-T8 around OKGIIK_03435

Experiment: no stress control

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntOKGIIK_03425 and OKGIIK_03430 are separated by 28 nucleotidesOKGIIK_03430 and OKGIIK_03435 are separated by 89 nucleotidesOKGIIK_03435 and rlmKL overlap by 4 nucleotides OKGIIK_03425: OKGIIK_03425 - AraC family transcriptional regulator, at 763,542 to 764,378 _03425 OKGIIK_03430: OKGIIK_03430 - N-acetylmuramoyl-L-alanine amidase, at 764,407 to 764,961 _03430 OKGIIK_03435: OKGIIK_03435 - Alpha/beta hydrolase, at 765,051 to 765,578 _03435 OKGIIK_03440: rlmKL - bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL, at 765,575 to 767,776 rlmKL Position (kb) 765 766Strain fitness (log2 ratio) -3 -2 -1 0 1at 764.161 kb on + strand, within OKGIIK_03425at 764.236 kb on + strand, within OKGIIK_03425at 764.236 kb on + strand, within OKGIIK_03425at 764.237 kb on - strand, within OKGIIK_03425at 764.237 kb on - strand, within OKGIIK_03425at 764.237 kb on - strand, within OKGIIK_03425at 764.408 kb on + strandat 764.408 kb on + strandat 764.408 kb on + strandat 764.408 kb on + strandat 764.408 kb on + strandat 764.409 kb on - strandat 764.754 kb on - strand, within OKGIIK_03430at 764.754 kb on - strand, within OKGIIK_03430at 764.783 kb on + strand, within OKGIIK_03430at 764.783 kb on + strand, within OKGIIK_03430at 764.783 kb on + strand, within OKGIIK_03430at 764.783 kb on + strand, within OKGIIK_03430at 764.783 kb on + strand, within OKGIIK_03430at 764.783 kb on + strand, within OKGIIK_03430at 764.783 kb on + strand, within OKGIIK_03430at 764.783 kb on + strand, within OKGIIK_03430at 764.783 kb on + strand, within OKGIIK_03430at 764.784 kb on - strand, within OKGIIK_03430at 764.784 kb on - strand, within OKGIIK_03430at 764.784 kb on - strand, within OKGIIK_03430at 764.784 kb on - strand, within OKGIIK_03430at 764.784 kb on - strand, within OKGIIK_03430at 764.784 kb on - strand, within OKGIIK_03430at 764.784 kb on - strand, within OKGIIK_03430at 764.784 kb on - strand, within OKGIIK_03430at 764.784 kb on - strand, within OKGIIK_03430at 764.784 kb on - strand, within OKGIIK_03430at 764.786 kb on + strand, within OKGIIK_03430at 764.786 kb on + strand, within OKGIIK_03430at 764.786 kb on + strand, within OKGIIK_03430at 764.786 kb on + strand, within OKGIIK_03430at 764.787 kb on - strand, within OKGIIK_03430at 764.787 kb on - strand, within OKGIIK_03430at 764.787 kb on - strand, within OKGIIK_03430at 764.928 kb on - strandat 764.928 kb on - strandat 764.928 kb on - strandat 764.928 kb on - strandat 764.928 kb on - strandat 765.008 kb on + strandat 765.008 kb on + strandat 765.009 kb on - strandat 765.009 kb on - strandat 765.009 kb on - strandat 765.009 kb on - strandat 765.009 kb on - strandat 765.166 kb on - strand, within OKGIIK_03435at 765.166 kb on - strand, within OKGIIK_03435at 765.363 kb on + strand, within OKGIIK_03435at 765.524 kb on + strand, within OKGIIK_03435at 765.524 kb on + strand, within OKGIIK_03435at 765.524 kb on + strand, within OKGIIK_03435at 765.524 kb on + strand, within OKGIIK_03435at 765.524 kb on + strand, within OKGIIK_03435at 765.524 kb on + strand, within OKGIIK_03435at 765.525 kb on - strand, within OKGIIK_03435at 765.525 kb on - strand, within OKGIIK_03435at 765.525 kb on - strand, within OKGIIK_03435at 765.525 kb on - strand, within OKGIIK_03435at 765.525 kb on - strand, within OKGIIK_03435at 765.525 kb on - strand, within OKGIIK_03435at 765.525 kb on - strand, within OKGIIK_03435at 765.629 kb on + strandat 765.630 kb on - strandat 765.630 kb on - strandat 765.630 kb on - strandat 765.630 kb on - strandat 765.630 kb on - strandat 765.630 kb on - strandat 765.630 kb on - strandat 765.630 kb on - strandat 765.630 kb on - strandat 765.630 kb on - strandat 765.630 kb on - strandat 765.722 kb on + strandat 765.722 kb on + strandat 765.806 kb on + strand, within rlmKLat 766.017 kb on + strand, within rlmKLat 766.017 kb on + strand, within rlmKLat 766.017 kb on + strand, within rlmKLat 766.017 kb on + strand, within rlmKLat 766.017 kb on + strand, within rlmKLat 766.018 kb on - strand, within rlmKLat 766.018 kb on - strand, within rlmKLat 766.018 kb on - strand, within rlmKLat 766.018 kb on - strand, within rlmKLat 766.160 kb on + strand, within rlmKLat 766.160 kb on + strand, within rlmKLat 766.160 kb on + strand, within rlmKLat 766.160 kb on + strand, within rlmKLat 766.161 kb on - strand, within rlmKLat 766.161 kb on - strand, within rlmKLat 766.161 kb on - strand, within rlmKLat 766.266 kb on - strand, within rlmKLat 766.574 kb on + strand, within rlmKLat 766.574 kb on + strand, within rlmKLat 766.574 kb on + strand, within rlmKLat 766.575 kb on - strand, within rlmKL

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction no stress control
remove
764,161 + OKGIIK_03425 0.74 -0.7
764,236 + OKGIIK_03425 0.83 +0.8
764,236 + OKGIIK_03425 0.83 -1.6
764,237 - OKGIIK_03425 0.83 -1.2
764,237 - OKGIIK_03425 0.83 +0.0
764,237 - OKGIIK_03425 0.83 +1.3
764,408 + +0.3
764,408 + +1.2
764,408 + +1.0
764,408 + +0.6
764,408 + +1.0
764,409 - -0.7
764,754 - OKGIIK_03430 0.63 -1.8
764,754 - OKGIIK_03430 0.63 -0.4
764,783 + OKGIIK_03430 0.68 -0.7
764,783 + OKGIIK_03430 0.68 -1.0
764,783 + OKGIIK_03430 0.68 -1.6
764,783 + OKGIIK_03430 0.68 -0.4
764,783 + OKGIIK_03430 0.68 -2.8
764,783 + OKGIIK_03430 0.68 -0.7
764,783 + OKGIIK_03430 0.68 -1.6
764,783 + OKGIIK_03430 0.68 -1.0
764,783 + OKGIIK_03430 0.68 -0.8
764,784 - OKGIIK_03430 0.68 -1.0
764,784 - OKGIIK_03430 0.68 -1.0
764,784 - OKGIIK_03430 0.68 -0.7
764,784 - OKGIIK_03430 0.68 -0.7
764,784 - OKGIIK_03430 0.68 -0.2
764,784 - OKGIIK_03430 0.68 -1.0
764,784 - OKGIIK_03430 0.68 +0.5
764,784 - OKGIIK_03430 0.68 +0.3
764,784 - OKGIIK_03430 0.68 -1.4
764,784 - OKGIIK_03430 0.68 -0.4
764,786 + OKGIIK_03430 0.68 -0.7
764,786 + OKGIIK_03430 0.68 -0.7
764,786 + OKGIIK_03430 0.68 -0.4
764,786 + OKGIIK_03430 0.68 -0.7
764,787 - OKGIIK_03430 0.68 -1.2
764,787 - OKGIIK_03430 0.68 -1.0
764,787 - OKGIIK_03430 0.68 -0.4
764,928 - -0.9
764,928 - -0.4
764,928 - -2.1
764,928 - -0.4
764,928 - -1.7
765,008 + -1.6
765,008 + +1.0
765,009 - -0.4
765,009 - -1.7
765,009 - +0.3
765,009 - +0.2
765,009 - -0.2
765,166 - OKGIIK_03435 0.22 -2.0
765,166 - OKGIIK_03435 0.22 -0.7
765,363 + OKGIIK_03435 0.59 -0.7
765,524 + OKGIIK_03435 0.90 -1.0
765,524 + OKGIIK_03435 0.90 -0.5
765,524 + OKGIIK_03435 0.90 +0.3
765,524 + OKGIIK_03435 0.90 -0.6
765,524 + OKGIIK_03435 0.90 +0.5
765,524 + OKGIIK_03435 0.90 +0.0
765,525 - OKGIIK_03435 0.90 -0.2
765,525 - OKGIIK_03435 0.90 -0.5
765,525 - OKGIIK_03435 0.90 -0.4
765,525 - OKGIIK_03435 0.90 -1.5
765,525 - OKGIIK_03435 0.90 +1.2
765,525 - OKGIIK_03435 0.90 -0.0
765,525 - OKGIIK_03435 0.90 -0.6
765,629 + -1.0
765,630 - -0.5
765,630 - +0.0
765,630 - -0.2
765,630 - -1.6
765,630 - -0.4
765,630 - +1.0
765,630 - -0.2
765,630 - +0.0
765,630 - +0.5
765,630 - -0.7
765,630 - +0.9
765,722 + -1.0
765,722 + -1.0
765,806 + rlmKL OKGIIK_03440 0.10 +1.4
766,017 + rlmKL OKGIIK_03440 0.20 -0.2
766,017 + rlmKL OKGIIK_03440 0.20 -0.4
766,017 + rlmKL OKGIIK_03440 0.20 +0.6
766,017 + rlmKL OKGIIK_03440 0.20 -0.4
766,017 + rlmKL OKGIIK_03440 0.20 -1.6
766,018 - rlmKL OKGIIK_03440 0.20 -2.9
766,018 - rlmKL OKGIIK_03440 0.20 -0.8
766,018 - rlmKL OKGIIK_03440 0.20 +0.2
766,018 - rlmKL OKGIIK_03440 0.20 -1.8
766,160 + rlmKL OKGIIK_03440 0.27 -0.4
766,160 + rlmKL OKGIIK_03440 0.27 +0.1
766,160 + rlmKL OKGIIK_03440 0.27 +0.1
766,160 + rlmKL OKGIIK_03440 0.27 -0.3
766,161 - rlmKL OKGIIK_03440 0.27 +0.2
766,161 - rlmKL OKGIIK_03440 0.27 +0.8
766,161 - rlmKL OKGIIK_03440 0.27 -1.7
766,266 - rlmKL OKGIIK_03440 0.31 +0.0
766,574 + rlmKL OKGIIK_03440 0.45 -0.4
766,574 + rlmKL OKGIIK_03440 0.45 +0.5
766,574 + rlmKL OKGIIK_03440 0.45 -0.4
766,575 - rlmKL OKGIIK_03440 0.45 +1.0

Or see this region's nucleotide sequence