Experiment: no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OKGIIK_03315 and OKGIIK_03320 overlap by 4 nucleotides OKGIIK_03320 and OKGIIK_03325 are separated by 192 nucleotides OKGIIK_03325 and citB are separated by 105 nucleotides citB and OKGIIK_03335 are separated by 233 nucleotides
OKGIIK_03315: OKGIIK_03315 - hypothetical protein, at 744,561 to 744,824
_03315
OKGIIK_03320: OKGIIK_03320 - GNAT family N-acetyltransferase, at 744,821 to 745,441
_03320
OKGIIK_03325: OKGIIK_03325 - two-component sensor histidine kinase, at 745,634 to 746,857
_03325
OKGIIK_03330: citB - DNA-binding response regulator, at 746,963 to 747,604
citB
OKGIIK_03335: OKGIIK_03335 - Polyketide cyclase, at 747,838 to 749,190
_03335
Position (kb) 745
746
747 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 744.634 kb on - strand, within OKGIIK_03315 at 744.634 kb on - strand, within OKGIIK_03315 at 744.634 kb on - strand, within OKGIIK_03315 at 744.759 kb on + strand, within OKGIIK_03315 at 744.760 kb on - strand, within OKGIIK_03315 at 745.029 kb on + strand, within OKGIIK_03320 at 745.030 kb on - strand, within OKGIIK_03320 at 745.030 kb on - strand, within OKGIIK_03320 at 745.114 kb on - strand, within OKGIIK_03320 at 745.131 kb on + strand, within OKGIIK_03320 at 745.228 kb on - strand, within OKGIIK_03320 at 745.228 kb on - strand, within OKGIIK_03320 at 745.327 kb on - strand, within OKGIIK_03320 at 745.332 kb on + strand, within OKGIIK_03320 at 745.395 kb on - strand at 745.395 kb on - strand at 745.527 kb on + strand at 745.527 kb on + strand at 745.527 kb on + strand at 745.527 kb on + strand at 745.527 kb on + strand at 745.527 kb on + strand at 745.527 kb on + strand at 745.527 kb on + strand at 745.527 kb on + strand at 745.528 kb on - strand at 745.528 kb on - strand at 745.528 kb on - strand at 745.528 kb on - strand at 745.528 kb on - strand at 745.528 kb on - strand at 745.528 kb on - strand at 745.528 kb on - strand at 745.528 kb on - strand at 745.528 kb on - strand at 745.548 kb on + strand at 745.549 kb on - strand at 745.691 kb on + strand at 745.691 kb on + strand at 745.691 kb on + strand at 745.691 kb on + strand at 745.691 kb on + strand at 745.691 kb on + strand at 745.691 kb on + strand at 745.691 kb on + strand at 745.692 kb on - strand at 745.692 kb on - strand at 745.790 kb on + strand, within OKGIIK_03325 at 745.790 kb on + strand, within OKGIIK_03325 at 745.790 kb on + strand, within OKGIIK_03325 at 745.790 kb on + strand, within OKGIIK_03325 at 745.790 kb on + strand, within OKGIIK_03325 at 745.791 kb on - strand, within OKGIIK_03325 at 745.791 kb on - strand, within OKGIIK_03325 at 745.791 kb on - strand, within OKGIIK_03325 at 745.791 kb on - strand, within OKGIIK_03325 at 745.791 kb on - strand, within OKGIIK_03325 at 745.811 kb on + strand, within OKGIIK_03325 at 745.811 kb on + strand, within OKGIIK_03325 at 745.811 kb on + strand, within OKGIIK_03325 at 745.811 kb on + strand, within OKGIIK_03325 at 745.811 kb on + strand, within OKGIIK_03325 at 745.811 kb on + strand, within OKGIIK_03325 at 745.811 kb on + strand, within OKGIIK_03325 at 745.811 kb on + strand, within OKGIIK_03325 at 745.811 kb on + strand, within OKGIIK_03325 at 745.811 kb on + strand, within OKGIIK_03325 at 745.811 kb on + strand, within OKGIIK_03325 at 745.811 kb on + strand, within OKGIIK_03325 at 745.811 kb on + strand, within OKGIIK_03325 at 745.811 kb on + strand, within OKGIIK_03325 at 745.811 kb on + strand, within OKGIIK_03325 at 745.812 kb on - strand, within OKGIIK_03325 at 745.812 kb on - strand, within OKGIIK_03325 at 745.812 kb on - strand, within OKGIIK_03325 at 745.812 kb on - strand, within OKGIIK_03325 at 745.812 kb on - strand, within OKGIIK_03325 at 745.812 kb on - strand, within OKGIIK_03325 at 745.812 kb on - strand, within OKGIIK_03325 at 745.910 kb on + strand, within OKGIIK_03325 at 745.910 kb on + strand, within OKGIIK_03325 at 745.910 kb on + strand, within OKGIIK_03325 at 745.910 kb on + strand, within OKGIIK_03325 at 745.910 kb on + strand, within OKGIIK_03325 at 745.910 kb on + strand, within OKGIIK_03325 at 745.911 kb on - strand, within OKGIIK_03325 at 745.911 kb on - strand, within OKGIIK_03325 at 745.911 kb on - strand, within OKGIIK_03325 at 745.938 kb on + strand, within OKGIIK_03325 at 745.938 kb on + strand, within OKGIIK_03325 at 745.938 kb on + strand, within OKGIIK_03325 at 745.938 kb on + strand, within OKGIIK_03325 at 745.938 kb on + strand, within OKGIIK_03325 at 745.938 kb on + strand, within OKGIIK_03325 at 745.938 kb on + strand, within OKGIIK_03325 at 745.938 kb on + strand, within OKGIIK_03325 at 745.938 kb on + strand, within OKGIIK_03325 at 745.938 kb on + strand, within OKGIIK_03325 at 745.939 kb on - strand, within OKGIIK_03325 at 745.939 kb on - strand, within OKGIIK_03325 at 745.939 kb on - strand, within OKGIIK_03325 at 745.939 kb on - strand, within OKGIIK_03325 at 745.939 kb on - strand, within OKGIIK_03325 at 745.939 kb on - strand, within OKGIIK_03325 at 745.939 kb on - strand, within OKGIIK_03325 at 746.051 kb on + strand, within OKGIIK_03325 at 746.051 kb on + strand, within OKGIIK_03325 at 746.051 kb on + strand, within OKGIIK_03325 at 746.052 kb on - strand, within OKGIIK_03325 at 746.052 kb on - strand, within OKGIIK_03325 at 746.093 kb on + strand, within OKGIIK_03325 at 746.093 kb on + strand, within OKGIIK_03325 at 746.093 kb on + strand, within OKGIIK_03325 at 746.093 kb on + strand, within OKGIIK_03325 at 746.093 kb on + strand, within OKGIIK_03325 at 746.093 kb on + strand, within OKGIIK_03325 at 746.093 kb on + strand, within OKGIIK_03325 at 746.094 kb on - strand, within OKGIIK_03325 at 746.094 kb on - strand, within OKGIIK_03325 at 746.094 kb on - strand, within OKGIIK_03325 at 746.094 kb on - strand, within OKGIIK_03325 at 746.094 kb on - strand, within OKGIIK_03325 at 746.094 kb on - strand, within OKGIIK_03325 at 746.094 kb on - strand, within OKGIIK_03325 at 746.094 kb on - strand, within OKGIIK_03325 at 746.094 kb on - strand, within OKGIIK_03325 at 746.094 kb on - strand, within OKGIIK_03325 at 746.570 kb on - strand, within OKGIIK_03325 at 746.616 kb on - strand, within OKGIIK_03325 at 746.855 kb on + strand at 746.855 kb on + strand at 746.855 kb on + strand at 746.855 kb on + strand at 746.855 kb on + strand at 746.855 kb on + strand at 746.856 kb on - strand at 746.856 kb on - strand at 746.856 kb on - strand at 746.856 kb on - strand at 746.856 kb on - strand at 746.856 kb on - strand at 746.936 kb on + strand at 746.936 kb on + strand at 746.936 kb on + strand at 746.936 kb on + strand at 746.936 kb on + strand at 746.936 kb on + strand at 746.936 kb on + strand at 746.936 kb on + strand at 746.936 kb on + strand at 746.936 kb on + strand at 746.936 kb on + strand at 746.936 kb on + strand at 746.936 kb on + strand at 746.936 kb on + strand at 746.936 kb on + strand at 746.936 kb on + strand at 746.936 kb on + strand at 746.936 kb on + strand at 746.936 kb on + strand at 746.936 kb on + strand at 746.937 kb on - strand at 746.937 kb on - strand at 746.937 kb on - strand at 746.937 kb on - strand at 746.937 kb on - strand at 746.937 kb on - strand at 746.937 kb on - strand at 746.937 kb on - strand at 746.937 kb on - strand at 746.937 kb on - strand at 746.937 kb on - strand at 746.937 kb on - strand at 746.937 kb on - strand at 746.937 kb on - strand at 747.263 kb on + strand, within citB at 747.464 kb on + strand, within citB at 747.465 kb on - strand, within citB at 747.508 kb on + strand, within citB at 747.508 kb on + strand, within citB at 747.509 kb on - strand, within citB at 747.710 kb on + strand at 747.710 kb on + strand at 747.710 kb on + strand at 747.710 kb on + strand at 747.710 kb on + strand at 747.710 kb on + strand at 747.710 kb on + strand at 747.710 kb on + strand at 747.710 kb on + strand at 747.710 kb on + strand at 747.710 kb on + strand at 747.710 kb on + strand at 747.710 kb on + strand at 747.710 kb on + strand at 747.710 kb on + strand at 747.710 kb on + strand at 747.710 kb on + strand at 747.710 kb on + strand at 747.710 kb on + strand at 747.710 kb on + strand at 747.710 kb on + strand at 747.710 kb on + strand at 747.710 kb on + strand at 747.710 kb on + strand at 747.710 kb on + strand at 747.710 kb on + strand at 747.710 kb on + strand at 747.710 kb on + strand at 747.710 kb on + strand at 747.710 kb on + strand at 747.710 kb on + strand at 747.710 kb on + strand at 747.710 kb on + strand at 747.710 kb on + strand at 747.711 kb on - strand at 747.711 kb on - strand at 747.711 kb on - strand at 747.711 kb on - strand at 747.711 kb on - strand at 747.711 kb on - strand at 747.711 kb on - strand at 747.711 kb on - strand at 747.711 kb on - strand at 747.806 kb on + strand at 747.806 kb on + strand at 747.806 kb on + strand at 747.806 kb on + strand at 747.806 kb on + strand at 747.806 kb on + strand at 747.806 kb on + strand at 747.806 kb on + strand at 747.806 kb on + strand at 747.806 kb on + strand at 747.807 kb on - strand at 747.807 kb on - strand at 747.807 kb on - strand at 747.813 kb on + strand at 747.813 kb on + strand at 747.813 kb on + strand at 747.813 kb on + strand at 747.814 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction no stress control remove 744,634 - OKGIIK_03315 0.28 +2.1 744,634 - OKGIIK_03315 0.28 +0.6 744,634 - OKGIIK_03315 0.28 -1.6 744,759 + OKGIIK_03315 0.75 -2.2 744,760 - OKGIIK_03315 0.75 -0.5 745,029 + OKGIIK_03320 0.33 -1.2 745,030 - OKGIIK_03320 0.34 +0.6 745,030 - OKGIIK_03320 0.34 -0.6 745,114 - OKGIIK_03320 0.47 +1.2 745,131 + OKGIIK_03320 0.50 -1.2 745,228 - OKGIIK_03320 0.66 -0.6 745,228 - OKGIIK_03320 0.66 +0.6 745,327 - OKGIIK_03320 0.81 -0.2 745,332 + OKGIIK_03320 0.82 -0.3 745,395 - +1.4 745,395 - +0.9 745,527 + -0.7 745,527 + +0.5 745,527 + +1.3 745,527 + +0.3 745,527 + +0.0 745,527 + -0.1 745,527 + -1.6 745,527 + +1.6 745,527 + +0.2 745,528 - -0.3 745,528 - -1.2 745,528 - -1.8 745,528 - -0.3 745,528 - -1.6 745,528 - -1.8 745,528 - -1.0 745,528 - -0.8 745,528 - -0.4 745,528 - -2.4 745,548 + -0.8 745,549 - -1.3 745,691 + -0.8 745,691 + -0.7 745,691 + -0.2 745,691 + +0.9 745,691 + +0.3 745,691 + +0.0 745,691 + -1.7 745,691 + +0.0 745,692 - +0.8 745,692 - -0.2 745,790 + OKGIIK_03325 0.13 -1.2 745,790 + OKGIIK_03325 0.13 +0.0 745,790 + OKGIIK_03325 0.13 +0.3 745,790 + OKGIIK_03325 0.13 -0.4 745,790 + OKGIIK_03325 0.13 -0.8 745,791 - OKGIIK_03325 0.13 -0.7 745,791 - OKGIIK_03325 0.13 -1.4 745,791 - OKGIIK_03325 0.13 +0.4 745,791 - OKGIIK_03325 0.13 +0.9 745,791 - OKGIIK_03325 0.13 -1.2 745,811 + OKGIIK_03325 0.14 -0.4 745,811 + OKGIIK_03325 0.14 -1.8 745,811 + OKGIIK_03325 0.14 -0.4 745,811 + OKGIIK_03325 0.14 +1.8 745,811 + OKGIIK_03325 0.14 -1.6 745,811 + OKGIIK_03325 0.14 -2.0 745,811 + OKGIIK_03325 0.14 -1.2 745,811 + OKGIIK_03325 0.14 -1.0 745,811 + OKGIIK_03325 0.14 -0.3 745,811 + OKGIIK_03325 0.14 -0.4 745,811 + OKGIIK_03325 0.14 +0.0 745,811 + OKGIIK_03325 0.14 -1.0 745,811 + OKGIIK_03325 0.14 -0.0 745,811 + OKGIIK_03325 0.14 -1.8 745,811 + OKGIIK_03325 0.14 +0.0 745,812 - OKGIIK_03325 0.15 -1.7 745,812 - OKGIIK_03325 0.15 -1.1 745,812 - OKGIIK_03325 0.15 -1.0 745,812 - OKGIIK_03325 0.15 -0.6 745,812 - OKGIIK_03325 0.15 -1.6 745,812 - OKGIIK_03325 0.15 -0.7 745,812 - OKGIIK_03325 0.15 -1.6 745,910 + OKGIIK_03325 0.23 -1.4 745,910 + OKGIIK_03325 0.23 +1.3 745,910 + OKGIIK_03325 0.23 +0.7 745,910 + OKGIIK_03325 0.23 -1.4 745,910 + OKGIIK_03325 0.23 -1.4 745,910 + OKGIIK_03325 0.23 +0.8 745,911 - OKGIIK_03325 0.23 -0.6 745,911 - OKGIIK_03325 0.23 -0.6 745,911 - OKGIIK_03325 0.23 -2.5 745,938 + OKGIIK_03325 0.25 +2.1 745,938 + OKGIIK_03325 0.25 -0.2 745,938 + OKGIIK_03325 0.25 +0.3 745,938 + OKGIIK_03325 0.25 +0.3 745,938 + OKGIIK_03325 0.25 -0.1 745,938 + OKGIIK_03325 0.25 +0.6 745,938 + OKGIIK_03325 0.25 -1.0 745,938 + OKGIIK_03325 0.25 +1.4 745,938 + OKGIIK_03325 0.25 +0.0 745,938 + OKGIIK_03325 0.25 +0.2 745,939 - OKGIIK_03325 0.25 -2.0 745,939 - OKGIIK_03325 0.25 -0.1 745,939 - OKGIIK_03325 0.25 -2.8 745,939 - OKGIIK_03325 0.25 -0.6 745,939 - OKGIIK_03325 0.25 -1.6 745,939 - OKGIIK_03325 0.25 -0.8 745,939 - OKGIIK_03325 0.25 -0.1 746,051 + OKGIIK_03325 0.34 +0.6 746,051 + OKGIIK_03325 0.34 +0.9 746,051 + OKGIIK_03325 0.34 -0.7 746,052 - OKGIIK_03325 0.34 +1.2 746,052 - OKGIIK_03325 0.34 -1.6 746,093 + OKGIIK_03325 0.38 -1.9 746,093 + OKGIIK_03325 0.38 -1.2 746,093 + OKGIIK_03325 0.38 -0.7 746,093 + OKGIIK_03325 0.38 -0.7 746,093 + OKGIIK_03325 0.38 +0.3 746,093 + OKGIIK_03325 0.38 +0.9 746,093 + OKGIIK_03325 0.38 -1.0 746,094 - OKGIIK_03325 0.38 +0.3 746,094 - OKGIIK_03325 0.38 +1.3 746,094 - OKGIIK_03325 0.38 -0.4 746,094 - OKGIIK_03325 0.38 -0.9 746,094 - OKGIIK_03325 0.38 -0.2 746,094 - OKGIIK_03325 0.38 +0.6 746,094 - OKGIIK_03325 0.38 -1.0 746,094 - OKGIIK_03325 0.38 -0.4 746,094 - OKGIIK_03325 0.38 +0.9 746,094 - OKGIIK_03325 0.38 +1.3 746,570 - OKGIIK_03325 0.76 -0.8 746,616 - OKGIIK_03325 0.80 +0.2 746,855 + +1.3 746,855 + -1.2 746,855 + +0.1 746,855 + -0.8 746,855 + +0.5 746,855 + +0.7 746,856 - +0.0 746,856 - -0.7 746,856 - +1.4 746,856 - +0.9 746,856 - -1.7 746,856 - +1.1 746,936 + +0.0 746,936 + -1.3 746,936 + +0.2 746,936 + +0.3 746,936 + -0.3 746,936 + +0.7 746,936 + +1.2 746,936 + -0.0 746,936 + +0.7 746,936 + -0.7 746,936 + -1.0 746,936 + -0.5 746,936 + -1.8 746,936 + -0.6 746,936 + -0.8 746,936 + -0.1 746,936 + +0.2 746,936 + +0.3 746,936 + -1.6 746,936 + -1.3 746,937 - -0.4 746,937 - -0.2 746,937 - +0.1 746,937 - -0.2 746,937 - +1.8 746,937 - -0.6 746,937 - -0.2 746,937 - +0.1 746,937 - +0.4 746,937 - +0.4 746,937 - -0.0 746,937 - +0.2 746,937 - +0.7 746,937 - +0.3 747,263 + citB OKGIIK_03330 0.47 -1.3 747,464 + citB OKGIIK_03330 0.78 -1.4 747,465 - citB OKGIIK_03330 0.78 +0.2 747,508 + citB OKGIIK_03330 0.85 +0.9 747,508 + citB OKGIIK_03330 0.85 +1.3 747,509 - citB OKGIIK_03330 0.85 -2.1 747,710 + -0.1 747,710 + -0.7 747,710 + -0.4 747,710 + +0.6 747,710 + -0.4 747,710 + -0.5 747,710 + +1.2 747,710 + -0.3 747,710 + -0.0 747,710 + -1.6 747,710 + -0.1 747,710 + +0.6 747,710 + -0.3 747,710 + -0.1 747,710 + -0.0 747,710 + +0.4 747,710 + -0.7 747,710 + +0.9 747,710 + -0.6 747,710 + -1.2 747,710 + +1.4 747,710 + -2.0 747,710 + -1.4 747,710 + +1.4 747,710 + -0.3 747,710 + +0.9 747,710 + +1.1 747,710 + +0.7 747,710 + +0.4 747,710 + -1.6 747,710 + -0.2 747,710 + -0.2 747,710 + -0.4 747,710 + +0.6 747,711 - +1.3 747,711 - -2.3 747,711 - +1.2 747,711 - +0.3 747,711 - +1.8 747,711 - +0.9 747,711 - -0.2 747,711 - -0.4 747,711 - +1.0 747,806 + +0.4 747,806 + +0.3 747,806 + -0.2 747,806 + -0.7 747,806 + -1.8 747,806 + -1.8 747,806 + -0.4 747,806 + +1.3 747,806 + +1.6 747,806 + +0.2 747,807 - +0.3 747,807 - -2.2 747,807 - +0.1 747,813 + -0.7 747,813 + -0.3 747,813 + +0.2 747,813 + +0.2 747,814 - -2.4
Or see this region's nucleotide sequence