Strain Fitness in Rhodanobacter sp. FW510-T8 around OKGIIK_01855

Experiment: no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntruvB and ybgC overlap by 8 nucleotidesybgC and tolQ are separated by 39 nucleotidestolQ and tolR are separated by 13 nucleotides OKGIIK_01850: ruvB - Holliday junction branch migration DNA helicase RuvB, at 429,612 to 430,661 ruvB OKGIIK_01855: ybgC - tol-pal system-associated acyl-CoA thioesterase, at 430,654 to 431,073 ybgC OKGIIK_01860: tolQ - protein TolQ, at 431,113 to 431,799 tolQ OKGIIK_01865: tolR - protein TolR, at 431,813 to 432,277 tolR Position (kb) 430 431 432Strain fitness (log2 ratio) -2 -1 0 1at 430.159 kb on - strand, within ruvBat 430.694 kb on + strandat 430.694 kb on + strandat 430.694 kb on + strandat 430.694 kb on + strandat 430.694 kb on + strandat 430.694 kb on + strandat 430.694 kb on + strandat 430.695 kb on - strandat 430.695 kb on - strandat 430.695 kb on - strandat 430.702 kb on + strand, within ybgCat 430.702 kb on + strand, within ybgCat 430.702 kb on + strand, within ybgCat 430.702 kb on + strand, within ybgCat 430.702 kb on + strand, within ybgCat 430.702 kb on + strand, within ybgCat 430.703 kb on - strand, within ybgCat 430.735 kb on + strand, within ybgCat 430.735 kb on + strand, within ybgCat 430.735 kb on + strand, within ybgCat 430.735 kb on + strand, within ybgCat 430.735 kb on + strand, within ybgCat 430.735 kb on + strand, within ybgCat 430.736 kb on - strand, within ybgCat 430.736 kb on - strand, within ybgCat 430.736 kb on - strand, within ybgCat 430.736 kb on - strand, within ybgCat 430.736 kb on - strand, within ybgCat 430.748 kb on - strand, within ybgCat 430.935 kb on + strand, within ybgCat 430.935 kb on + strand, within ybgCat 430.935 kb on + strand, within ybgCat 430.936 kb on - strand, within ybgCat 430.936 kb on - strand, within ybgC

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Per-strain Table

Position Strand Gene LocusTag Fraction no stress control
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430,159 - ruvB OKGIIK_01850 0.52 -0.4
430,694 + -1.2
430,694 + -1.7
430,694 + -0.3
430,694 + +0.0
430,694 + -1.0
430,694 + -0.4
430,694 + -2.2
430,695 - +0.0
430,695 - +0.6
430,695 - -0.4
430,702 + ybgC OKGIIK_01855 0.11 -0.9
430,702 + ybgC OKGIIK_01855 0.11 -2.1
430,702 + ybgC OKGIIK_01855 0.11 -0.4
430,702 + ybgC OKGIIK_01855 0.11 +0.0
430,702 + ybgC OKGIIK_01855 0.11 +0.5
430,702 + ybgC OKGIIK_01855 0.11 +0.2
430,703 - ybgC OKGIIK_01855 0.12 +0.7
430,735 + ybgC OKGIIK_01855 0.19 +0.0
430,735 + ybgC OKGIIK_01855 0.19 -1.4
430,735 + ybgC OKGIIK_01855 0.19 +0.1
430,735 + ybgC OKGIIK_01855 0.19 -1.5
430,735 + ybgC OKGIIK_01855 0.19 -0.7
430,735 + ybgC OKGIIK_01855 0.19 +0.9
430,736 - ybgC OKGIIK_01855 0.20 +0.0
430,736 - ybgC OKGIIK_01855 0.20 -2.0
430,736 - ybgC OKGIIK_01855 0.20 +0.9
430,736 - ybgC OKGIIK_01855 0.20 +1.3
430,736 - ybgC OKGIIK_01855 0.20 -0.7
430,748 - ybgC OKGIIK_01855 0.22 +1.3
430,935 + ybgC OKGIIK_01855 0.67 -1.7
430,935 + ybgC OKGIIK_01855 0.67 -1.4
430,935 + ybgC OKGIIK_01855 0.67 -0.4
430,936 - ybgC OKGIIK_01855 0.67 -0.7
430,936 - ybgC OKGIIK_01855 0.67 -1.0

Or see this region's nucleotide sequence