Strain Fitness in Rhodanobacter sp. FW510-T8 around OKGIIK_01555

Experiment: no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntsSL2 and OKGIIK_01545 are separated by 85 nucleotidesOKGIIK_01545 and OKGIIK_01550 are separated by 12 nucleotidesOKGIIK_01550 and OKGIIK_01555 are separated by 113 nucleotidesOKGIIK_01555 and OKGIIK_01560 are separated by 77 nucleotidesOKGIIK_01560 and sdaA are separated by 111 nucleotides OKGIIK_01540: sSL2 - restriction endonuclease subunit R, at 349,773 to 352,718 sSL2 OKGIIK_01545: OKGIIK_01545 - Plasmid maintenance system killer, at 352,804 to 353,085 _01545 OKGIIK_01550: OKGIIK_01550 - HigA family addiction module antitoxin, at 353,098 to 353,403 _01550 OKGIIK_01555: OKGIIK_01555 - Site-specific DNA-methyltransferase (adenine-specific), at 353,517 to 355,526 _01555 OKGIIK_01560: OKGIIK_01560 - HTH cro/C1-type domain-containing protein, at 355,604 to 356,050 _01560 OKGIIK_01565: sdaA - L-serine ammonia-lyase, at 356,162 to 357,544 sdaA Position (kb) 353 354 355 356Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 352.621 kb on + strandat 352.621 kb on + strandat 352.621 kb on + strandat 352.621 kb on + strandat 352.622 kb on - strandat 352.753 kb on - strandat 352.787 kb on + strandat 352.787 kb on + strandat 352.788 kb on - strandat 352.788 kb on - strandat 353.078 kb on - strandat 353.080 kb on - strandat 353.095 kb on + strandat 353.379 kb on + strandat 353.379 kb on + strandat 353.379 kb on + strandat 353.379 kb on + strandat 353.380 kb on - strandat 353.457 kb on + strandat 353.458 kb on - strandat 353.681 kb on - strandat 353.717 kb on - strandat 353.717 kb on - strandat 353.717 kb on - strandat 353.737 kb on + strand, within OKGIIK_01555at 353.737 kb on + strand, within OKGIIK_01555at 353.833 kb on + strand, within OKGIIK_01555at 353.833 kb on + strand, within OKGIIK_01555at 353.833 kb on + strand, within OKGIIK_01555at 353.833 kb on + strand, within OKGIIK_01555at 353.833 kb on + strand, within OKGIIK_01555at 353.833 kb on + strand, within OKGIIK_01555at 353.833 kb on + strand, within OKGIIK_01555at 353.833 kb on + strand, within OKGIIK_01555at 353.833 kb on + strand, within OKGIIK_01555at 353.833 kb on + strand, within OKGIIK_01555at 353.833 kb on + strand, within OKGIIK_01555at 353.834 kb on - strand, within OKGIIK_01555at 353.834 kb on - strand, within OKGIIK_01555at 353.834 kb on - strand, within OKGIIK_01555at 353.834 kb on - strand, within OKGIIK_01555at 353.834 kb on - strand, within OKGIIK_01555at 353.834 kb on - strand, within OKGIIK_01555at 353.834 kb on - strand, within OKGIIK_01555at 353.834 kb on - strand, within OKGIIK_01555at 353.834 kb on - strand, within OKGIIK_01555at 353.834 kb on - strand, within OKGIIK_01555at 353.834 kb on - strand, within OKGIIK_01555at 353.834 kb on - strand, within OKGIIK_01555at 353.905 kb on + strand, within OKGIIK_01555at 353.905 kb on + strand, within OKGIIK_01555at 353.905 kb on + strand, within OKGIIK_01555at 353.905 kb on + strand, within OKGIIK_01555at 353.906 kb on - strand, within OKGIIK_01555at 353.906 kb on - strand, within OKGIIK_01555at 353.906 kb on - strand, within OKGIIK_01555at 353.906 kb on - strand, within OKGIIK_01555at 354.187 kb on + strand, within OKGIIK_01555at 354.188 kb on - strand, within OKGIIK_01555at 354.188 kb on - strand, within OKGIIK_01555at 354.248 kb on - strand, within OKGIIK_01555at 354.248 kb on - strand, within OKGIIK_01555at 354.248 kb on - strand, within OKGIIK_01555at 354.326 kb on - strand, within OKGIIK_01555at 354.326 kb on - strand, within OKGIIK_01555at 354.326 kb on - strand, within OKGIIK_01555at 354.326 kb on - strand, within OKGIIK_01555at 354.343 kb on + strand, within OKGIIK_01555at 354.579 kb on - strand, within OKGIIK_01555at 354.613 kb on + strand, within OKGIIK_01555at 354.613 kb on + strand, within OKGIIK_01555at 354.613 kb on + strand, within OKGIIK_01555at 354.613 kb on + strand, within OKGIIK_01555at 354.613 kb on + strand, within OKGIIK_01555at 354.613 kb on + strand, within OKGIIK_01555at 354.613 kb on + strand, within OKGIIK_01555at 354.613 kb on + strand, within OKGIIK_01555at 354.613 kb on + strand, within OKGIIK_01555at 354.613 kb on + strand, within OKGIIK_01555at 354.614 kb on - strand, within OKGIIK_01555at 354.614 kb on - strand, within OKGIIK_01555at 354.614 kb on - strand, within OKGIIK_01555at 354.614 kb on - strand, within OKGIIK_01555at 354.614 kb on - strand, within OKGIIK_01555at 354.614 kb on - strand, within OKGIIK_01555at 354.614 kb on - strand, within OKGIIK_01555at 354.614 kb on - strand, within OKGIIK_01555at 354.614 kb on - strand, within OKGIIK_01555at 354.614 kb on - strand, within OKGIIK_01555at 354.614 kb on - strand, within OKGIIK_01555at 354.626 kb on + strand, within OKGIIK_01555at 354.755 kb on - strand, within OKGIIK_01555at 354.776 kb on - strand, within OKGIIK_01555at 354.776 kb on - strand, within OKGIIK_01555at 354.787 kb on + strand, within OKGIIK_01555at 354.788 kb on - strand, within OKGIIK_01555at 354.788 kb on - strand, within OKGIIK_01555at 354.796 kb on + strand, within OKGIIK_01555at 354.796 kb on + strand, within OKGIIK_01555at 354.796 kb on + strand, within OKGIIK_01555at 354.796 kb on + strand, within OKGIIK_01555at 354.797 kb on - strand, within OKGIIK_01555at 354.797 kb on - strand, within OKGIIK_01555at 354.797 kb on - strand, within OKGIIK_01555at 354.797 kb on - strand, within OKGIIK_01555at 354.797 kb on - strand, within OKGIIK_01555at 354.797 kb on - strand, within OKGIIK_01555at 354.823 kb on + strand, within OKGIIK_01555at 354.835 kb on + strand, within OKGIIK_01555at 354.836 kb on - strand, within OKGIIK_01555at 354.836 kb on - strand, within OKGIIK_01555at 354.836 kb on - strand, within OKGIIK_01555at 354.847 kb on + strand, within OKGIIK_01555at 354.847 kb on + strand, within OKGIIK_01555at 354.847 kb on + strand, within OKGIIK_01555at 354.847 kb on + strand, within OKGIIK_01555at 354.847 kb on + strand, within OKGIIK_01555at 354.847 kb on + strand, within OKGIIK_01555at 354.848 kb on - strand, within OKGIIK_01555at 354.848 kb on - strand, within OKGIIK_01555at 354.848 kb on - strand, within OKGIIK_01555at 354.848 kb on - strand, within OKGIIK_01555at 354.848 kb on - strand, within OKGIIK_01555at 354.904 kb on + strand, within OKGIIK_01555at 354.904 kb on + strand, within OKGIIK_01555at 354.905 kb on - strand, within OKGIIK_01555at 354.905 kb on - strand, within OKGIIK_01555at 354.905 kb on - strand, within OKGIIK_01555at 354.905 kb on - strand, within OKGIIK_01555at 354.970 kb on + strand, within OKGIIK_01555at 354.970 kb on + strand, within OKGIIK_01555at 354.971 kb on - strand, within OKGIIK_01555at 354.971 kb on - strand, within OKGIIK_01555at 354.971 kb on - strand, within OKGIIK_01555at 355.023 kb on + strand, within OKGIIK_01555at 355.023 kb on + strand, within OKGIIK_01555at 355.024 kb on - strand, within OKGIIK_01555at 355.024 kb on - strand, within OKGIIK_01555at 355.052 kb on + strand, within OKGIIK_01555at 355.052 kb on + strand, within OKGIIK_01555at 355.053 kb on - strand, within OKGIIK_01555at 355.066 kb on + strand, within OKGIIK_01555at 355.066 kb on + strand, within OKGIIK_01555at 355.066 kb on + strand, within OKGIIK_01555at 355.066 kb on + strand, within OKGIIK_01555at 355.067 kb on - strand, within OKGIIK_01555at 355.067 kb on - strand, within OKGIIK_01555at 355.091 kb on + strand, within OKGIIK_01555at 355.091 kb on + strand, within OKGIIK_01555at 355.091 kb on + strand, within OKGIIK_01555at 355.091 kb on + strand, within OKGIIK_01555at 355.091 kb on + strand, within OKGIIK_01555at 355.091 kb on + strand, within OKGIIK_01555at 355.091 kb on + strand, within OKGIIK_01555at 355.091 kb on + strand, within OKGIIK_01555at 355.092 kb on - strand, within OKGIIK_01555at 355.092 kb on - strand, within OKGIIK_01555at 355.092 kb on - strand, within OKGIIK_01555at 355.092 kb on - strand, within OKGIIK_01555at 355.100 kb on - strand, within OKGIIK_01555at 355.140 kb on + strand, within OKGIIK_01555at 355.140 kb on + strand, within OKGIIK_01555at 355.169 kb on - strand, within OKGIIK_01555at 355.201 kb on + strand, within OKGIIK_01555at 355.201 kb on + strand, within OKGIIK_01555at 355.201 kb on + strand, within OKGIIK_01555at 355.201 kb on + strand, within OKGIIK_01555at 355.201 kb on + strand, within OKGIIK_01555at 355.201 kb on + strand, within OKGIIK_01555at 355.201 kb on + strand, within OKGIIK_01555at 355.201 kb on + strand, within OKGIIK_01555at 355.202 kb on - strand, within OKGIIK_01555at 355.202 kb on - strand, within OKGIIK_01555at 355.202 kb on - strand, within OKGIIK_01555at 355.202 kb on - strand, within OKGIIK_01555at 355.202 kb on - strand, within OKGIIK_01555at 355.202 kb on - strand, within OKGIIK_01555at 355.285 kb on + strand, within OKGIIK_01555at 355.285 kb on + strand, within OKGIIK_01555at 355.286 kb on - strand, within OKGIIK_01555at 355.531 kb on + strandat 355.895 kb on + strand, within OKGIIK_01560at 355.895 kb on + strand, within OKGIIK_01560at 355.896 kb on - strand, within OKGIIK_01560at 355.922 kb on + strand, within OKGIIK_01560at 356.071 kb on + strandat 356.071 kb on + strandat 356.211 kb on + strandat 356.211 kb on + strandat 356.211 kb on + strandat 356.211 kb on + strandat 356.211 kb on + strandat 356.212 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction no stress control
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352,621 + +0.2
352,621 + -2.1
352,621 + +0.2
352,621 + -0.6
352,622 - +0.0
352,753 - -1.0
352,787 + +0.9
352,787 + -0.7
352,788 - -1.3
352,788 - -1.0
353,078 - -0.9
353,080 - -0.5
353,095 + +0.7
353,379 + -0.1
353,379 + +0.5
353,379 + -0.3
353,379 + -0.4
353,380 - +0.9
353,457 + -0.3
353,458 - -0.1
353,681 - -0.1
353,717 - +2.4
353,717 - -0.9
353,717 - -0.3
353,737 + OKGIIK_01555 0.11 -0.7
353,737 + OKGIIK_01555 0.11 -1.9
353,833 + OKGIIK_01555 0.16 +0.3
353,833 + OKGIIK_01555 0.16 -0.9
353,833 + OKGIIK_01555 0.16 -0.7
353,833 + OKGIIK_01555 0.16 -0.0
353,833 + OKGIIK_01555 0.16 +1.0
353,833 + OKGIIK_01555 0.16 -0.9
353,833 + OKGIIK_01555 0.16 +1.0
353,833 + OKGIIK_01555 0.16 -0.2
353,833 + OKGIIK_01555 0.16 -2.0
353,833 + OKGIIK_01555 0.16 -0.3
353,833 + OKGIIK_01555 0.16 -2.8
353,834 - OKGIIK_01555 0.16 -1.0
353,834 - OKGIIK_01555 0.16 +0.4
353,834 - OKGIIK_01555 0.16 -0.1
353,834 - OKGIIK_01555 0.16 -1.1
353,834 - OKGIIK_01555 0.16 -1.7
353,834 - OKGIIK_01555 0.16 +1.2
353,834 - OKGIIK_01555 0.16 -0.6
353,834 - OKGIIK_01555 0.16 -1.2
353,834 - OKGIIK_01555 0.16 +0.1
353,834 - OKGIIK_01555 0.16 -0.5
353,834 - OKGIIK_01555 0.16 +0.7
353,834 - OKGIIK_01555 0.16 -0.5
353,905 + OKGIIK_01555 0.19 -0.6
353,905 + OKGIIK_01555 0.19 -1.6
353,905 + OKGIIK_01555 0.19 -0.9
353,905 + OKGIIK_01555 0.19 -0.7
353,906 - OKGIIK_01555 0.19 -0.4
353,906 - OKGIIK_01555 0.19 +0.9
353,906 - OKGIIK_01555 0.19 +0.3
353,906 - OKGIIK_01555 0.19 +0.2
354,187 + OKGIIK_01555 0.33 +1.0
354,188 - OKGIIK_01555 0.33 +1.1
354,188 - OKGIIK_01555 0.33 +0.9
354,248 - OKGIIK_01555 0.36 -1.7
354,248 - OKGIIK_01555 0.36 +0.0
354,248 - OKGIIK_01555 0.36 +0.2
354,326 - OKGIIK_01555 0.40 -0.3
354,326 - OKGIIK_01555 0.40 +0.4
354,326 - OKGIIK_01555 0.40 -0.4
354,326 - OKGIIK_01555 0.40 +0.3
354,343 + OKGIIK_01555 0.41 +0.1
354,579 - OKGIIK_01555 0.53 +0.2
354,613 + OKGIIK_01555 0.55 +0.2
354,613 + OKGIIK_01555 0.55 -0.7
354,613 + OKGIIK_01555 0.55 -0.0
354,613 + OKGIIK_01555 0.55 +0.6
354,613 + OKGIIK_01555 0.55 -1.7
354,613 + OKGIIK_01555 0.55 +0.4
354,613 + OKGIIK_01555 0.55 -2.2
354,613 + OKGIIK_01555 0.55 -2.5
354,613 + OKGIIK_01555 0.55 -1.3
354,613 + OKGIIK_01555 0.55 -0.1
354,614 - OKGIIK_01555 0.55 -2.0
354,614 - OKGIIK_01555 0.55 -1.0
354,614 - OKGIIK_01555 0.55 +1.3
354,614 - OKGIIK_01555 0.55 +0.0
354,614 - OKGIIK_01555 0.55 +0.9
354,614 - OKGIIK_01555 0.55 -1.4
354,614 - OKGIIK_01555 0.55 +0.2
354,614 - OKGIIK_01555 0.55 +0.0
354,614 - OKGIIK_01555 0.55 +0.6
354,614 - OKGIIK_01555 0.55 -1.9
354,614 - OKGIIK_01555 0.55 +0.4
354,626 + OKGIIK_01555 0.55 +0.3
354,755 - OKGIIK_01555 0.62 -0.4
354,776 - OKGIIK_01555 0.63 +0.2
354,776 - OKGIIK_01555 0.63 +0.5
354,787 + OKGIIK_01555 0.63 +1.3
354,788 - OKGIIK_01555 0.63 -0.3
354,788 - OKGIIK_01555 0.63 +2.2
354,796 + OKGIIK_01555 0.64 -1.7
354,796 + OKGIIK_01555 0.64 +0.2
354,796 + OKGIIK_01555 0.64 -0.3
354,796 + OKGIIK_01555 0.64 +0.9
354,797 - OKGIIK_01555 0.64 -1.2
354,797 - OKGIIK_01555 0.64 +0.3
354,797 - OKGIIK_01555 0.64 -0.0
354,797 - OKGIIK_01555 0.64 +1.0
354,797 - OKGIIK_01555 0.64 -1.7
354,797 - OKGIIK_01555 0.64 +1.3
354,823 + OKGIIK_01555 0.65 +0.2
354,835 + OKGIIK_01555 0.66 +0.0
354,836 - OKGIIK_01555 0.66 +0.7
354,836 - OKGIIK_01555 0.66 -1.7
354,836 - OKGIIK_01555 0.66 -0.1
354,847 + OKGIIK_01555 0.66 +2.4
354,847 + OKGIIK_01555 0.66 +0.7
354,847 + OKGIIK_01555 0.66 +0.0
354,847 + OKGIIK_01555 0.66 -0.4
354,847 + OKGIIK_01555 0.66 -0.7
354,847 + OKGIIK_01555 0.66 +1.1
354,848 - OKGIIK_01555 0.66 +0.8
354,848 - OKGIIK_01555 0.66 -0.1
354,848 - OKGIIK_01555 0.66 -0.5
354,848 - OKGIIK_01555 0.66 -1.2
354,848 - OKGIIK_01555 0.66 -1.2
354,904 + OKGIIK_01555 0.69 -0.2
354,904 + OKGIIK_01555 0.69 +1.3
354,905 - OKGIIK_01555 0.69 +0.9
354,905 - OKGIIK_01555 0.69 +1.2
354,905 - OKGIIK_01555 0.69 -0.1
354,905 - OKGIIK_01555 0.69 -0.9
354,970 + OKGIIK_01555 0.72 +0.4
354,970 + OKGIIK_01555 0.72 -1.4
354,971 - OKGIIK_01555 0.72 +1.3
354,971 - OKGIIK_01555 0.72 -1.7
354,971 - OKGIIK_01555 0.72 -1.6
355,023 + OKGIIK_01555 0.75 -1.4
355,023 + OKGIIK_01555 0.75 -0.4
355,024 - OKGIIK_01555 0.75 -1.9
355,024 - OKGIIK_01555 0.75 -0.6
355,052 + OKGIIK_01555 0.76 +0.6
355,052 + OKGIIK_01555 0.76 +2.6
355,053 - OKGIIK_01555 0.76 +0.3
355,066 + OKGIIK_01555 0.77 +0.3
355,066 + OKGIIK_01555 0.77 -2.8
355,066 + OKGIIK_01555 0.77 -0.0
355,066 + OKGIIK_01555 0.77 +0.3
355,067 - OKGIIK_01555 0.77 -1.1
355,067 - OKGIIK_01555 0.77 -1.0
355,091 + OKGIIK_01555 0.78 +0.3
355,091 + OKGIIK_01555 0.78 +0.0
355,091 + OKGIIK_01555 0.78 -1.0
355,091 + OKGIIK_01555 0.78 -0.4
355,091 + OKGIIK_01555 0.78 +2.1
355,091 + OKGIIK_01555 0.78 -0.3
355,091 + OKGIIK_01555 0.78 +0.0
355,091 + OKGIIK_01555 0.78 +0.4
355,092 - OKGIIK_01555 0.78 -0.2
355,092 - OKGIIK_01555 0.78 -0.1
355,092 - OKGIIK_01555 0.78 +0.3
355,092 - OKGIIK_01555 0.78 -0.7
355,100 - OKGIIK_01555 0.79 -0.4
355,140 + OKGIIK_01555 0.81 -1.5
355,140 + OKGIIK_01555 0.81 -0.7
355,169 - OKGIIK_01555 0.82 +0.3
355,201 + OKGIIK_01555 0.84 +0.9
355,201 + OKGIIK_01555 0.84 -0.5
355,201 + OKGIIK_01555 0.84 +0.3
355,201 + OKGIIK_01555 0.84 +0.3
355,201 + OKGIIK_01555 0.84 +0.1
355,201 + OKGIIK_01555 0.84 +0.0
355,201 + OKGIIK_01555 0.84 +0.6
355,201 + OKGIIK_01555 0.84 -0.3
355,202 - OKGIIK_01555 0.84 +1.2
355,202 - OKGIIK_01555 0.84 -0.1
355,202 - OKGIIK_01555 0.84 -0.4
355,202 - OKGIIK_01555 0.84 +0.1
355,202 - OKGIIK_01555 0.84 +1.3
355,202 - OKGIIK_01555 0.84 +0.7
355,285 + OKGIIK_01555 0.88 -0.8
355,285 + OKGIIK_01555 0.88 -1.2
355,286 - OKGIIK_01555 0.88 -0.4
355,531 + -0.1
355,895 + OKGIIK_01560 0.65 -0.2
355,895 + OKGIIK_01560 0.65 -0.4
355,896 - OKGIIK_01560 0.65 -0.4
355,922 + OKGIIK_01560 0.71 -1.9
356,071 + +0.3
356,071 + +0.0
356,211 + -1.5
356,211 + +0.5
356,211 + -1.0
356,211 + +1.5
356,211 + -1.1
356,212 - +0.4

Or see this region's nucleotide sequence