Experiment: no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ycgM and hemN are separated by 97 nucleotides hemN and crp are separated by 32 nucleotides crp and OKGIIK_00810 are separated by 30 nucleotides
OKGIIK_00795: ycgM - 2-keto-4-pentenoate hydratase, at 176,628 to 177,614
ycgM
OKGIIK_00800: hemN - oxygen-independent coproporphyrinogen III oxidase, at 177,712 to 179,112
hemN
OKGIIK_00805: crp - cAMP-binding domain of CRP or a regulatory subunit of cAMP-dependent protein kinases, at 179,145 to 179,906
crp
OKGIIK_00810: OKGIIK_00810 - Universal stress protein UspA, at 179,937 to 180,782
_00810
Position (kb) 177
178
179
180 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 176.865 kb on + strand, within ycgM at 176.866 kb on - strand, within ycgM at 176.889 kb on + strand, within ycgM at 176.949 kb on + strand, within ycgM at 176.967 kb on + strand, within ycgM at 176.967 kb on + strand, within ycgM at 176.967 kb on + strand, within ycgM at 176.967 kb on + strand, within ycgM at 176.967 kb on + strand, within ycgM at 176.968 kb on - strand, within ycgM at 176.968 kb on - strand, within ycgM at 176.968 kb on - strand, within ycgM at 176.968 kb on - strand, within ycgM at 176.968 kb on - strand, within ycgM at 177.113 kb on + strand, within ycgM at 177.113 kb on + strand, within ycgM at 177.113 kb on + strand, within ycgM at 177.113 kb on + strand, within ycgM at 177.113 kb on + strand, within ycgM at 177.113 kb on + strand, within ycgM at 177.113 kb on + strand, within ycgM at 177.113 kb on + strand, within ycgM at 177.114 kb on - strand, within ycgM at 177.114 kb on - strand, within ycgM at 177.114 kb on - strand, within ycgM at 177.114 kb on - strand, within ycgM at 177.114 kb on - strand, within ycgM at 177.604 kb on - strand at 177.612 kb on + strand at 177.612 kb on + strand at 177.612 kb on + strand at 177.612 kb on + strand at 177.613 kb on - strand at 177.763 kb on + strand at 177.764 kb on - strand at 177.784 kb on + strand at 177.784 kb on + strand at 177.784 kb on + strand at 177.784 kb on + strand at 177.785 kb on - strand at 177.785 kb on - strand at 177.794 kb on - strand at 177.895 kb on + strand, within hemN at 177.895 kb on + strand, within hemN at 177.895 kb on + strand, within hemN at 177.895 kb on + strand, within hemN at 177.896 kb on - strand, within hemN at 177.896 kb on - strand, within hemN at 177.896 kb on - strand, within hemN at 177.896 kb on - strand, within hemN at 177.896 kb on - strand, within hemN at 177.896 kb on - strand, within hemN at 177.896 kb on - strand, within hemN at 177.896 kb on - strand, within hemN at 177.931 kb on + strand, within hemN at 177.931 kb on + strand, within hemN at 177.931 kb on + strand, within hemN at 177.932 kb on - strand, within hemN at 177.932 kb on - strand, within hemN at 177.932 kb on - strand, within hemN at 177.932 kb on - strand, within hemN at 177.932 kb on - strand, within hemN at 177.982 kb on + strand, within hemN at 177.983 kb on - strand, within hemN at 177.997 kb on + strand, within hemN at 178.201 kb on + strand, within hemN at 178.201 kb on + strand, within hemN at 178.201 kb on + strand, within hemN at 178.201 kb on + strand, within hemN at 178.201 kb on + strand, within hemN at 178.201 kb on + strand, within hemN at 178.202 kb on - strand, within hemN at 178.202 kb on - strand, within hemN at 178.202 kb on - strand, within hemN at 178.202 kb on - strand, within hemN at 178.372 kb on + strand, within hemN at 178.372 kb on + strand, within hemN at 178.372 kb on + strand, within hemN at 178.373 kb on - strand, within hemN at 178.456 kb on + strand, within hemN at 178.456 kb on + strand, within hemN at 178.456 kb on + strand, within hemN at 178.456 kb on + strand, within hemN at 178.456 kb on + strand, within hemN at 178.456 kb on + strand, within hemN at 178.456 kb on + strand, within hemN at 178.457 kb on - strand, within hemN at 178.457 kb on - strand, within hemN at 178.457 kb on - strand, within hemN at 178.457 kb on - strand, within hemN at 178.457 kb on - strand, within hemN at 178.457 kb on - strand, within hemN at 178.582 kb on + strand, within hemN at 178.582 kb on + strand, within hemN at 178.582 kb on + strand, within hemN at 178.583 kb on - strand, within hemN at 178.583 kb on - strand, within hemN at 178.583 kb on - strand, within hemN at 178.583 kb on - strand, within hemN at 178.588 kb on + strand, within hemN at 178.588 kb on + strand, within hemN at 178.588 kb on + strand, within hemN at 178.588 kb on + strand, within hemN at 178.588 kb on + strand, within hemN at 178.588 kb on + strand, within hemN at 178.588 kb on + strand, within hemN at 178.589 kb on - strand, within hemN at 178.589 kb on - strand, within hemN at 178.589 kb on - strand, within hemN at 178.589 kb on - strand, within hemN at 178.589 kb on - strand, within hemN at 178.589 kb on - strand, within hemN at 178.589 kb on - strand, within hemN at 178.589 kb on - strand, within hemN at 178.589 kb on - strand, within hemN at 178.675 kb on + strand, within hemN at 178.676 kb on - strand, within hemN at 178.744 kb on + strand, within hemN at 178.744 kb on + strand, within hemN at 178.744 kb on + strand, within hemN at 178.744 kb on + strand, within hemN at 178.744 kb on + strand, within hemN at 178.744 kb on + strand, within hemN at 178.744 kb on + strand, within hemN at 178.745 kb on - strand, within hemN at 178.745 kb on - strand, within hemN at 178.745 kb on - strand, within hemN at 178.745 kb on - strand, within hemN at 178.745 kb on - strand, within hemN at 178.745 kb on - strand, within hemN at 178.745 kb on - strand, within hemN at 178.774 kb on + strand, within hemN at 178.774 kb on + strand, within hemN at 178.775 kb on - strand, within hemN at 178.777 kb on + strand, within hemN at 178.777 kb on + strand, within hemN at 178.778 kb on - strand, within hemN at 178.778 kb on - strand, within hemN at 178.778 kb on - strand, within hemN at 178.933 kb on + strand, within hemN at 178.933 kb on + strand, within hemN at 178.933 kb on + strand, within hemN at 178.934 kb on - strand, within hemN at 178.934 kb on - strand, within hemN at 178.934 kb on - strand, within hemN at 178.934 kb on - strand, within hemN at 178.934 kb on - strand, within hemN at 179.040 kb on + strand at 179.040 kb on + strand at 179.041 kb on - strand at 179.041 kb on - strand at 179.041 kb on - strand at 179.041 kb on - strand at 179.065 kb on + strand at 179.065 kb on + strand at 179.065 kb on + strand at 179.065 kb on + strand at 179.065 kb on + strand at 179.065 kb on + strand at 179.066 kb on - strand at 179.066 kb on - strand at 179.066 kb on - strand at 179.066 kb on - strand at 179.066 kb on - strand at 179.095 kb on + strand at 179.095 kb on + strand at 179.157 kb on + strand at 179.158 kb on - strand at 179.228 kb on + strand, within crp at 179.228 kb on + strand, within crp at 179.229 kb on - strand, within crp at 179.229 kb on - strand, within crp at 179.229 kb on - strand, within crp at 179.229 kb on - strand, within crp at 179.442 kb on + strand, within crp at 179.442 kb on + strand, within crp at 179.442 kb on + strand, within crp at 179.443 kb on - strand, within crp at 179.443 kb on - strand, within crp at 179.443 kb on - strand, within crp at 179.443 kb on - strand, within crp at 179.443 kb on - strand, within crp at 179.478 kb on + strand, within crp at 179.478 kb on + strand, within crp at 179.479 kb on - strand, within crp at 179.698 kb on - strand, within crp at 179.763 kb on + strand, within crp at 179.763 kb on + strand, within crp at 179.763 kb on + strand, within crp at 179.763 kb on + strand, within crp at 179.763 kb on + strand, within crp at 179.763 kb on + strand, within crp at 179.763 kb on + strand, within crp at 179.763 kb on + strand, within crp at 179.763 kb on + strand, within crp at 179.764 kb on - strand, within crp at 179.764 kb on - strand, within crp at 179.764 kb on - strand, within crp at 179.764 kb on - strand, within crp at 179.764 kb on - strand, within crp at 179.764 kb on - strand, within crp at 179.764 kb on - strand, within crp at 179.905 kb on - strand at 180.028 kb on + strand, within OKGIIK_00810
Per-strain Table
Position Strand Gene LocusTag Fraction no stress control remove 176,865 + ycgM OKGIIK_00795 0.24 -1.3 176,866 - ycgM OKGIIK_00795 0.24 -1.0 176,889 + ycgM OKGIIK_00795 0.26 +0.3 176,949 + ycgM OKGIIK_00795 0.33 -2.5 176,967 + ycgM OKGIIK_00795 0.34 -0.5 176,967 + ycgM OKGIIK_00795 0.34 -2.6 176,967 + ycgM OKGIIK_00795 0.34 -0.5 176,967 + ycgM OKGIIK_00795 0.34 +0.1 176,967 + ycgM OKGIIK_00795 0.34 -1.3 176,968 - ycgM OKGIIK_00795 0.34 +0.1 176,968 - ycgM OKGIIK_00795 0.34 -0.7 176,968 - ycgM OKGIIK_00795 0.34 -2.9 176,968 - ycgM OKGIIK_00795 0.34 -1.3 176,968 - ycgM OKGIIK_00795 0.34 -1.6 177,113 + ycgM OKGIIK_00795 0.49 -0.5 177,113 + ycgM OKGIIK_00795 0.49 -1.0 177,113 + ycgM OKGIIK_00795 0.49 -0.8 177,113 + ycgM OKGIIK_00795 0.49 -0.8 177,113 + ycgM OKGIIK_00795 0.49 -2.0 177,113 + ycgM OKGIIK_00795 0.49 -0.5 177,113 + ycgM OKGIIK_00795 0.49 -0.3 177,113 + ycgM OKGIIK_00795 0.49 -1.9 177,114 - ycgM OKGIIK_00795 0.49 -1.0 177,114 - ycgM OKGIIK_00795 0.49 -0.8 177,114 - ycgM OKGIIK_00795 0.49 -1.0 177,114 - ycgM OKGIIK_00795 0.49 -0.3 177,114 - ycgM OKGIIK_00795 0.49 -0.5 177,604 - -0.3 177,612 + -0.5 177,612 + -0.8 177,612 + -0.8 177,612 + +1.3 177,613 - -0.1 177,763 + +0.4 177,764 - +1.0 177,784 + +0.5 177,784 + -0.3 177,784 + -1.6 177,784 + -0.7 177,785 - -0.5 177,785 - -0.1 177,794 - -0.3 177,895 + hemN OKGIIK_00800 0.13 +0.2 177,895 + hemN OKGIIK_00800 0.13 -0.3 177,895 + hemN OKGIIK_00800 0.13 -0.4 177,895 + hemN OKGIIK_00800 0.13 +0.6 177,896 - hemN OKGIIK_00800 0.13 +0.7 177,896 - hemN OKGIIK_00800 0.13 -0.0 177,896 - hemN OKGIIK_00800 0.13 +0.8 177,896 - hemN OKGIIK_00800 0.13 -0.6 177,896 - hemN OKGIIK_00800 0.13 -1.6 177,896 - hemN OKGIIK_00800 0.13 -2.4 177,896 - hemN OKGIIK_00800 0.13 -0.7 177,896 - hemN OKGIIK_00800 0.13 -0.5 177,931 + hemN OKGIIK_00800 0.16 +1.1 177,931 + hemN OKGIIK_00800 0.16 -0.2 177,931 + hemN OKGIIK_00800 0.16 -0.7 177,932 - hemN OKGIIK_00800 0.16 -0.8 177,932 - hemN OKGIIK_00800 0.16 +1.1 177,932 - hemN OKGIIK_00800 0.16 -1.5 177,932 - hemN OKGIIK_00800 0.16 -0.4 177,932 - hemN OKGIIK_00800 0.16 -0.4 177,982 + hemN OKGIIK_00800 0.19 -0.5 177,983 - hemN OKGIIK_00800 0.19 -0.0 177,997 + hemN OKGIIK_00800 0.20 +0.5 178,201 + hemN OKGIIK_00800 0.35 -0.0 178,201 + hemN OKGIIK_00800 0.35 -0.3 178,201 + hemN OKGIIK_00800 0.35 -0.3 178,201 + hemN OKGIIK_00800 0.35 +0.4 178,201 + hemN OKGIIK_00800 0.35 +0.4 178,201 + hemN OKGIIK_00800 0.35 -1.3 178,202 - hemN OKGIIK_00800 0.35 -1.0 178,202 - hemN OKGIIK_00800 0.35 -0.5 178,202 - hemN OKGIIK_00800 0.35 -1.7 178,202 - hemN OKGIIK_00800 0.35 -0.8 178,372 + hemN OKGIIK_00800 0.47 -2.0 178,372 + hemN OKGIIK_00800 0.47 -1.3 178,372 + hemN OKGIIK_00800 0.47 -1.3 178,373 - hemN OKGIIK_00800 0.47 -0.5 178,456 + hemN OKGIIK_00800 0.53 -0.5 178,456 + hemN OKGIIK_00800 0.53 -0.1 178,456 + hemN OKGIIK_00800 0.53 +0.5 178,456 + hemN OKGIIK_00800 0.53 -0.2 178,456 + hemN OKGIIK_00800 0.53 -1.1 178,456 + hemN OKGIIK_00800 0.53 -0.7 178,456 + hemN OKGIIK_00800 0.53 -1.0 178,457 - hemN OKGIIK_00800 0.53 -2.6 178,457 - hemN OKGIIK_00800 0.53 -1.1 178,457 - hemN OKGIIK_00800 0.53 -1.1 178,457 - hemN OKGIIK_00800 0.53 +1.5 178,457 - hemN OKGIIK_00800 0.53 +0.2 178,457 - hemN OKGIIK_00800 0.53 +1.5 178,582 + hemN OKGIIK_00800 0.62 -0.5 178,582 + hemN OKGIIK_00800 0.62 +1.2 178,582 + hemN OKGIIK_00800 0.62 +0.5 178,583 - hemN OKGIIK_00800 0.62 -0.3 178,583 - hemN OKGIIK_00800 0.62 +2.3 178,583 - hemN OKGIIK_00800 0.62 -2.0 178,583 - hemN OKGIIK_00800 0.62 +0.1 178,588 + hemN OKGIIK_00800 0.63 -0.8 178,588 + hemN OKGIIK_00800 0.63 +0.8 178,588 + hemN OKGIIK_00800 0.63 -0.1 178,588 + hemN OKGIIK_00800 0.63 -0.7 178,588 + hemN OKGIIK_00800 0.63 +1.3 178,588 + hemN OKGIIK_00800 0.63 +0.5 178,588 + hemN OKGIIK_00800 0.63 -0.8 178,589 - hemN OKGIIK_00800 0.63 +0.7 178,589 - hemN OKGIIK_00800 0.63 +0.5 178,589 - hemN OKGIIK_00800 0.63 -0.5 178,589 - hemN OKGIIK_00800 0.63 +0.9 178,589 - hemN OKGIIK_00800 0.63 -1.9 178,589 - hemN OKGIIK_00800 0.63 -0.5 178,589 - hemN OKGIIK_00800 0.63 +0.5 178,589 - hemN OKGIIK_00800 0.63 -1.5 178,589 - hemN OKGIIK_00800 0.63 -2.9 178,675 + hemN OKGIIK_00800 0.69 -2.3 178,676 - hemN OKGIIK_00800 0.69 +1.8 178,744 + hemN OKGIIK_00800 0.74 +0.2 178,744 + hemN OKGIIK_00800 0.74 +1.8 178,744 + hemN OKGIIK_00800 0.74 -0.5 178,744 + hemN OKGIIK_00800 0.74 +0.0 178,744 + hemN OKGIIK_00800 0.74 -0.5 178,744 + hemN OKGIIK_00800 0.74 -0.3 178,744 + hemN OKGIIK_00800 0.74 -0.3 178,745 - hemN OKGIIK_00800 0.74 -0.6 178,745 - hemN OKGIIK_00800 0.74 -0.0 178,745 - hemN OKGIIK_00800 0.74 +0.5 178,745 - hemN OKGIIK_00800 0.74 -0.2 178,745 - hemN OKGIIK_00800 0.74 -0.5 178,745 - hemN OKGIIK_00800 0.74 -0.0 178,745 - hemN OKGIIK_00800 0.74 -1.3 178,774 + hemN OKGIIK_00800 0.76 -0.5 178,774 + hemN OKGIIK_00800 0.76 -1.6 178,775 - hemN OKGIIK_00800 0.76 +0.5 178,777 + hemN OKGIIK_00800 0.76 -0.5 178,777 + hemN OKGIIK_00800 0.76 -0.5 178,778 - hemN OKGIIK_00800 0.76 +0.8 178,778 - hemN OKGIIK_00800 0.76 -0.5 178,778 - hemN OKGIIK_00800 0.76 -1.0 178,933 + hemN OKGIIK_00800 0.87 +0.8 178,933 + hemN OKGIIK_00800 0.87 +1.5 178,933 + hemN OKGIIK_00800 0.87 -0.3 178,934 - hemN OKGIIK_00800 0.87 -0.5 178,934 - hemN OKGIIK_00800 0.87 +1.2 178,934 - hemN OKGIIK_00800 0.87 +0.4 178,934 - hemN OKGIIK_00800 0.87 -0.9 178,934 - hemN OKGIIK_00800 0.87 +0.2 179,040 + -1.3 179,040 + +0.7 179,041 - -0.4 179,041 - -0.6 179,041 - +0.3 179,041 - -1.2 179,065 + +0.2 179,065 + -0.4 179,065 + -1.5 179,065 + +0.3 179,065 + +1.1 179,065 + -0.5 179,066 - +0.3 179,066 - -1.5 179,066 - -0.2 179,066 - -0.5 179,066 - -1.8 179,095 + +1.0 179,095 + +0.5 179,157 + +2.9 179,158 - -0.8 179,228 + crp OKGIIK_00805 0.11 -1.2 179,228 + crp OKGIIK_00805 0.11 -0.8 179,229 - crp OKGIIK_00805 0.11 +1.3 179,229 - crp OKGIIK_00805 0.11 +0.1 179,229 - crp OKGIIK_00805 0.11 -0.0 179,229 - crp OKGIIK_00805 0.11 -0.0 179,442 + crp OKGIIK_00805 0.39 -0.3 179,442 + crp OKGIIK_00805 0.39 +0.2 179,442 + crp OKGIIK_00805 0.39 -1.8 179,443 - crp OKGIIK_00805 0.39 -0.6 179,443 - crp OKGIIK_00805 0.39 -0.8 179,443 - crp OKGIIK_00805 0.39 -1.5 179,443 - crp OKGIIK_00805 0.39 +0.2 179,443 - crp OKGIIK_00805 0.39 -0.8 179,478 + crp OKGIIK_00805 0.44 -0.3 179,478 + crp OKGIIK_00805 0.44 +0.4 179,479 - crp OKGIIK_00805 0.44 -0.3 179,698 - crp OKGIIK_00805 0.73 -0.8 179,763 + crp OKGIIK_00805 0.81 +0.1 179,763 + crp OKGIIK_00805 0.81 +0.4 179,763 + crp OKGIIK_00805 0.81 +0.5 179,763 + crp OKGIIK_00805 0.81 +0.7 179,763 + crp OKGIIK_00805 0.81 -0.6 179,763 + crp OKGIIK_00805 0.81 -1.4 179,763 + crp OKGIIK_00805 0.81 -0.1 179,763 + crp OKGIIK_00805 0.81 +0.3 179,763 + crp OKGIIK_00805 0.81 +0.9 179,764 - crp OKGIIK_00805 0.81 -0.5 179,764 - crp OKGIIK_00805 0.81 -1.0 179,764 - crp OKGIIK_00805 0.81 -0.6 179,764 - crp OKGIIK_00805 0.81 -1.8 179,764 - crp OKGIIK_00805 0.81 -1.8 179,764 - crp OKGIIK_00805 0.81 -0.6 179,764 - crp OKGIIK_00805 0.81 +0.1 179,905 - -0.9 180,028 + OKGIIK_00810 0.11 -1.3
Or see this region's nucleotide sequence