Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06889

Experiment: MGL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06888 and MPMX19_06889 are separated by 9 nucleotidesMPMX19_06889 and MPMX19_06890 overlap by 1 nucleotides MPMX19_06888: MPMX19_06888 - hypothetical protein, at 160,511 to 161,962 _06888 MPMX19_06889: MPMX19_06889 - Dimethyl sulfoxide/trimethylamine N-oxide reductase, at 161,972 to 164,272 _06889 MPMX19_06890: MPMX19_06890 - hypothetical protein, at 164,272 to 165,309 _06890 Position (kb) 161 162 163 164 165Strain fitness (log2 ratio) -3 -2 -1 0 1at 161.681 kb on + strand, within MPMX19_06888at 161.681 kb on + strand, within MPMX19_06888at 161.681 kb on + strand, within MPMX19_06888at 161.681 kb on + strand, within MPMX19_06888at 161.681 kb on + strand, within MPMX19_06888at 161.681 kb on + strand, within MPMX19_06888at 161.682 kb on - strand, within MPMX19_06888at 161.682 kb on - strand, within MPMX19_06888at 161.682 kb on - strand, within MPMX19_06888at 161.682 kb on - strand, within MPMX19_06888at 161.682 kb on - strand, within MPMX19_06888at 161.858 kb on + strandat 161.858 kb on + strandat 161.858 kb on + strandat 161.858 kb on + strandat 161.858 kb on + strandat 161.858 kb on + strandat 161.859 kb on - strandat 161.859 kb on - strandat 161.859 kb on - strandat 161.859 kb on - strandat 161.859 kb on - strandat 161.859 kb on - strandat 161.859 kb on - strandat 161.859 kb on - strandat 161.859 kb on - strandat 161.859 kb on - strandat 161.859 kb on - strandat 161.859 kb on - strandat 162.168 kb on + strandat 162.168 kb on + strandat 162.169 kb on - strandat 162.370 kb on - strand, within MPMX19_06889at 162.370 kb on - strand, within MPMX19_06889at 162.370 kb on - strand, within MPMX19_06889at 162.370 kb on - strand, within MPMX19_06889at 162.370 kb on - strand, within MPMX19_06889at 162.370 kb on - strand, within MPMX19_06889at 163.062 kb on + strand, within MPMX19_06889at 163.062 kb on + strand, within MPMX19_06889at 163.063 kb on - strand, within MPMX19_06889at 163.063 kb on - strand, within MPMX19_06889at 163.063 kb on - strand, within MPMX19_06889at 163.443 kb on + strand, within MPMX19_06889at 163.443 kb on + strand, within MPMX19_06889at 163.444 kb on - strand, within MPMX19_06889at 163.444 kb on - strand, within MPMX19_06889at 163.845 kb on + strand, within MPMX19_06889at 163.866 kb on + strand, within MPMX19_06889at 163.941 kb on + strand, within MPMX19_06889at 163.941 kb on + strand, within MPMX19_06889at 163.941 kb on + strand, within MPMX19_06889at 164.230 kb on - strandat 164.418 kb on - strand, within MPMX19_06890at 164.418 kb on - strand, within MPMX19_06890at 164.418 kb on - strand, within MPMX19_06890at 164.418 kb on - strand, within MPMX19_06890at 164.418 kb on - strand, within MPMX19_06890at 164.577 kb on - strand, within MPMX19_06890at 164.577 kb on - strand, within MPMX19_06890at 164.577 kb on - strand, within MPMX19_06890at 164.577 kb on - strand, within MPMX19_06890at 164.577 kb on - strand, within MPMX19_06890at 164.639 kb on + strand, within MPMX19_06890at 164.639 kb on + strand, within MPMX19_06890at 164.639 kb on + strand, within MPMX19_06890at 164.639 kb on + strand, within MPMX19_06890at 164.735 kb on + strand, within MPMX19_06890at 164.904 kb on - strand, within MPMX19_06890at 164.904 kb on - strand, within MPMX19_06890at 164.904 kb on - strand, within MPMX19_06890at 164.904 kb on - strand, within MPMX19_06890

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Per-strain Table

Position Strand Gene LocusTag Fraction MGL
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161,681 + MPMX19_06888 0.81 -0.2
161,681 + MPMX19_06888 0.81 +0.6
161,681 + MPMX19_06888 0.81 +0.0
161,681 + MPMX19_06888 0.81 +0.6
161,681 + MPMX19_06888 0.81 -0.2
161,681 + MPMX19_06888 0.81 +0.4
161,682 - MPMX19_06888 0.81 +0.8
161,682 - MPMX19_06888 0.81 +0.0
161,682 - MPMX19_06888 0.81 +1.1
161,682 - MPMX19_06888 0.81 +0.6
161,682 - MPMX19_06888 0.81 -0.4
161,858 + -0.6
161,858 + +0.0
161,858 + -1.6
161,858 + -0.4
161,858 + -1.9
161,858 + -1.2
161,859 - +0.6
161,859 - +1.4
161,859 - +0.0
161,859 - +0.2
161,859 - -0.5
161,859 - -0.6
161,859 - -1.3
161,859 - +0.5
161,859 - -0.4
161,859 - -1.9
161,859 - +1.3
161,859 - -0.6
162,168 + -0.7
162,168 + -0.1
162,169 - +0.6
162,370 - MPMX19_06889 0.17 +0.3
162,370 - MPMX19_06889 0.17 +0.0
162,370 - MPMX19_06889 0.17 -0.2
162,370 - MPMX19_06889 0.17 +1.4
162,370 - MPMX19_06889 0.17 -1.1
162,370 - MPMX19_06889 0.17 -0.7
163,062 + MPMX19_06889 0.47 -0.9
163,062 + MPMX19_06889 0.47 -0.4
163,063 - MPMX19_06889 0.47 -2.5
163,063 - MPMX19_06889 0.47 -0.4
163,063 - MPMX19_06889 0.47 -0.9
163,443 + MPMX19_06889 0.64 -0.6
163,443 + MPMX19_06889 0.64 +1.2
163,444 - MPMX19_06889 0.64 -2.4
163,444 - MPMX19_06889 0.64 +0.3
163,845 + MPMX19_06889 0.81 -0.6
163,866 + MPMX19_06889 0.82 -3.0
163,941 + MPMX19_06889 0.86 -0.6
163,941 + MPMX19_06889 0.86 -2.6
163,941 + MPMX19_06889 0.86 -1.8
164,230 - -0.1
164,418 - MPMX19_06890 0.14 +0.5
164,418 - MPMX19_06890 0.14 -1.1
164,418 - MPMX19_06890 0.14 +0.6
164,418 - MPMX19_06890 0.14 -0.2
164,418 - MPMX19_06890 0.14 -0.6
164,577 - MPMX19_06890 0.29 +1.0
164,577 - MPMX19_06890 0.29 -0.2
164,577 - MPMX19_06890 0.29 -0.8
164,577 - MPMX19_06890 0.29 -1.3
164,577 - MPMX19_06890 0.29 +0.4
164,639 + MPMX19_06890 0.35 -0.2
164,639 + MPMX19_06890 0.35 -1.0
164,639 + MPMX19_06890 0.35 +0.3
164,639 + MPMX19_06890 0.35 -1.3
164,735 + MPMX19_06890 0.45 +0.4
164,904 - MPMX19_06890 0.61 +0.8
164,904 - MPMX19_06890 0.61 -0.7
164,904 - MPMX19_06890 0.61 -1.6
164,904 - MPMX19_06890 0.61 -0.8

Or see this region's nucleotide sequence