Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06812

Experiment: MGL

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX19_06810 and MPMX19_06811 are separated by 30 nucleotidesMPMX19_06811 and MPMX19_06812 are separated by 42 nucleotidesMPMX19_06812 and MPMX19_06813 are separated by 80 nucleotides MPMX19_06810: MPMX19_06810 - hypothetical protein, at 75,124 to 76,392 _06810 MPMX19_06811: MPMX19_06811 - Cytochrome c4, at 76,423 to 76,746 _06811 MPMX19_06812: MPMX19_06812 - hypothetical protein, at 76,789 to 78,597 _06812 MPMX19_06813: MPMX19_06813 - putative MFS-type transporter YcaD, at 78,678 to 79,955 _06813 Position (kb) 76 77 78 79Strain fitness (log2 ratio) -2 -1 0 1at 75.841 kb on + strand, within MPMX19_06810at 75.842 kb on - strand, within MPMX19_06810at 75.842 kb on - strand, within MPMX19_06810at 75.842 kb on - strand, within MPMX19_06810at 75.842 kb on - strand, within MPMX19_06810at 75.842 kb on - strand, within MPMX19_06810at 75.842 kb on - strand, within MPMX19_06810at 75.997 kb on + strand, within MPMX19_06810at 75.998 kb on - strand, within MPMX19_06810at 75.998 kb on - strand, within MPMX19_06810at 76.000 kb on + strand, within MPMX19_06810at 76.000 kb on + strand, within MPMX19_06810at 76.000 kb on + strand, within MPMX19_06810at 76.001 kb on - strand, within MPMX19_06810at 76.030 kb on + strand, within MPMX19_06810at 76.078 kb on + strand, within MPMX19_06810at 76.079 kb on - strand, within MPMX19_06810at 76.114 kb on + strand, within MPMX19_06810at 76.141 kb on + strand, within MPMX19_06810at 76.291 kb on + strandat 76.292 kb on - strandat 76.369 kb on + strandat 76.369 kb on + strandat 76.381 kb on + strandat 76.381 kb on + strandat 76.468 kb on + strand, within MPMX19_06811at 76.468 kb on + strand, within MPMX19_06811at 76.468 kb on + strand, within MPMX19_06811at 76.468 kb on + strand, within MPMX19_06811at 76.469 kb on - strand, within MPMX19_06811at 76.469 kb on - strand, within MPMX19_06811at 76.469 kb on - strand, within MPMX19_06811at 76.600 kb on + strand, within MPMX19_06811at 76.600 kb on + strand, within MPMX19_06811at 76.600 kb on + strand, within MPMX19_06811at 76.601 kb on - strand, within MPMX19_06811at 76.601 kb on - strand, within MPMX19_06811at 76.625 kb on - strand, within MPMX19_06811at 76.708 kb on + strand, within MPMX19_06811at 76.708 kb on + strand, within MPMX19_06811at 76.708 kb on + strand, within MPMX19_06811at 76.708 kb on + strand, within MPMX19_06811at 76.708 kb on + strand, within MPMX19_06811at 76.708 kb on + strand, within MPMX19_06811at 76.709 kb on - strand, within MPMX19_06811at 76.709 kb on - strand, within MPMX19_06811at 76.709 kb on - strand, within MPMX19_06811at 76.709 kb on - strand, within MPMX19_06811at 76.745 kb on - strandat 76.970 kb on + strand, within MPMX19_06812at 76.971 kb on - strand, within MPMX19_06812at 76.971 kb on - strand, within MPMX19_06812at 76.992 kb on - strand, within MPMX19_06812at 76.992 kb on - strand, within MPMX19_06812at 77.015 kb on + strand, within MPMX19_06812at 77.015 kb on + strand, within MPMX19_06812at 77.048 kb on + strand, within MPMX19_06812at 77.049 kb on - strand, within MPMX19_06812at 77.049 kb on - strand, within MPMX19_06812at 77.187 kb on - strand, within MPMX19_06812at 77.963 kb on + strand, within MPMX19_06812at 77.964 kb on - strand, within MPMX19_06812at 77.964 kb on - strand, within MPMX19_06812at 78.257 kb on + strand, within MPMX19_06812at 78.257 kb on + strand, within MPMX19_06812at 78.258 kb on - strand, within MPMX19_06812at 78.258 kb on - strand, within MPMX19_06812at 78.258 kb on - strand, within MPMX19_06812at 78.644 kb on + strandat 78.644 kb on + strandat 78.895 kb on + strand, within MPMX19_06813at 79.054 kb on + strand, within MPMX19_06813at 79.054 kb on + strand, within MPMX19_06813at 79.054 kb on + strand, within MPMX19_06813at 79.054 kb on + strand, within MPMX19_06813at 79.054 kb on + strand, within MPMX19_06813at 79.054 kb on + strand, within MPMX19_06813at 79.054 kb on + strand, within MPMX19_06813at 79.054 kb on + strand, within MPMX19_06813at 79.054 kb on + strand, within MPMX19_06813at 79.054 kb on + strand, within MPMX19_06813at 79.054 kb on + strand, within MPMX19_06813at 79.055 kb on - strand, within MPMX19_06813at 79.055 kb on - strand, within MPMX19_06813at 79.055 kb on - strand, within MPMX19_06813at 79.055 kb on - strand, within MPMX19_06813at 79.055 kb on - strand, within MPMX19_06813at 79.055 kb on - strand, within MPMX19_06813at 79.303 kb on + strand, within MPMX19_06813at 79.303 kb on + strand, within MPMX19_06813at 79.303 kb on + strand, within MPMX19_06813at 79.304 kb on - strand, within MPMX19_06813at 79.304 kb on - strand, within MPMX19_06813at 79.304 kb on - strand, within MPMX19_06813at 79.304 kb on - strand, within MPMX19_06813at 79.561 kb on + strand, within MPMX19_06813at 79.561 kb on + strand, within MPMX19_06813at 79.561 kb on + strand, within MPMX19_06813at 79.561 kb on + strand, within MPMX19_06813at 79.561 kb on + strand, within MPMX19_06813at 79.561 kb on + strand, within MPMX19_06813at 79.561 kb on + strand, within MPMX19_06813at 79.561 kb on + strand, within MPMX19_06813at 79.562 kb on - strand, within MPMX19_06813at 79.562 kb on - strand, within MPMX19_06813at 79.562 kb on - strand, within MPMX19_06813at 79.562 kb on - strand, within MPMX19_06813

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MGL
remove
75,841 + MPMX19_06810 0.57 -0.3
75,842 - MPMX19_06810 0.57 +0.3
75,842 - MPMX19_06810 0.57 +0.3
75,842 - MPMX19_06810 0.57 -1.4
75,842 - MPMX19_06810 0.57 +1.0
75,842 - MPMX19_06810 0.57 -0.9
75,842 - MPMX19_06810 0.57 -0.4
75,997 + MPMX19_06810 0.69 +0.5
75,998 - MPMX19_06810 0.69 +1.3
75,998 - MPMX19_06810 0.69 -0.3
76,000 + MPMX19_06810 0.69 +0.6
76,000 + MPMX19_06810 0.69 -0.1
76,000 + MPMX19_06810 0.69 -0.2
76,001 - MPMX19_06810 0.69 -0.4
76,030 + MPMX19_06810 0.71 +1.0
76,078 + MPMX19_06810 0.75 +0.1
76,079 - MPMX19_06810 0.75 +1.1
76,114 + MPMX19_06810 0.78 +0.3
76,141 + MPMX19_06810 0.80 -1.8
76,291 + +0.3
76,292 - -1.4
76,369 + -1.0
76,369 + +1.3
76,381 + +0.8
76,381 + -0.7
76,468 + MPMX19_06811 0.14 -0.5
76,468 + MPMX19_06811 0.14 +0.8
76,468 + MPMX19_06811 0.14 +0.0
76,468 + MPMX19_06811 0.14 -0.2
76,469 - MPMX19_06811 0.14 -0.7
76,469 - MPMX19_06811 0.14 -0.5
76,469 - MPMX19_06811 0.14 +0.3
76,600 + MPMX19_06811 0.55 -0.9
76,600 + MPMX19_06811 0.55 +0.0
76,600 + MPMX19_06811 0.55 -0.6
76,601 - MPMX19_06811 0.55 -0.7
76,601 - MPMX19_06811 0.55 -1.5
76,625 - MPMX19_06811 0.62 +0.2
76,708 + MPMX19_06811 0.88 -2.0
76,708 + MPMX19_06811 0.88 +0.6
76,708 + MPMX19_06811 0.88 -1.7
76,708 + MPMX19_06811 0.88 -0.4
76,708 + MPMX19_06811 0.88 +1.0
76,708 + MPMX19_06811 0.88 -1.3
76,709 - MPMX19_06811 0.88 -0.4
76,709 - MPMX19_06811 0.88 -0.3
76,709 - MPMX19_06811 0.88 -2.0
76,709 - MPMX19_06811 0.88 -1.3
76,745 - +0.3
76,970 + MPMX19_06812 0.10 -1.2
76,971 - MPMX19_06812 0.10 -0.3
76,971 - MPMX19_06812 0.10 +0.5
76,992 - MPMX19_06812 0.11 -1.0
76,992 - MPMX19_06812 0.11 -0.6
77,015 + MPMX19_06812 0.12 -1.6
77,015 + MPMX19_06812 0.12 -1.6
77,048 + MPMX19_06812 0.14 -1.4
77,049 - MPMX19_06812 0.14 -1.1
77,049 - MPMX19_06812 0.14 -0.9
77,187 - MPMX19_06812 0.22 -0.4
77,963 + MPMX19_06812 0.65 +0.6
77,964 - MPMX19_06812 0.65 -1.6
77,964 - MPMX19_06812 0.65 -2.0
78,257 + MPMX19_06812 0.81 -0.6
78,257 + MPMX19_06812 0.81 -0.7
78,258 - MPMX19_06812 0.81 -0.6
78,258 - MPMX19_06812 0.81 +0.3
78,258 - MPMX19_06812 0.81 +0.0
78,644 + -0.2
78,644 + -0.7
78,895 + MPMX19_06813 0.17 -1.5
79,054 + MPMX19_06813 0.29 -1.0
79,054 + MPMX19_06813 0.29 -1.0
79,054 + MPMX19_06813 0.29 +1.3
79,054 + MPMX19_06813 0.29 -0.6
79,054 + MPMX19_06813 0.29 -1.6
79,054 + MPMX19_06813 0.29 +0.1
79,054 + MPMX19_06813 0.29 +0.4
79,054 + MPMX19_06813 0.29 +0.3
79,054 + MPMX19_06813 0.29 -0.4
79,054 + MPMX19_06813 0.29 -2.1
79,054 + MPMX19_06813 0.29 +0.6
79,055 - MPMX19_06813 0.29 +0.1
79,055 - MPMX19_06813 0.29 -1.3
79,055 - MPMX19_06813 0.29 -0.6
79,055 - MPMX19_06813 0.29 -0.7
79,055 - MPMX19_06813 0.29 -0.1
79,055 - MPMX19_06813 0.29 -1.0
79,303 + MPMX19_06813 0.49 +0.0
79,303 + MPMX19_06813 0.49 -2.0
79,303 + MPMX19_06813 0.49 -0.6
79,304 - MPMX19_06813 0.49 -0.6
79,304 - MPMX19_06813 0.49 -1.6
79,304 - MPMX19_06813 0.49 +0.3
79,304 - MPMX19_06813 0.49 -0.4
79,561 + MPMX19_06813 0.69 -0.6
79,561 + MPMX19_06813 0.69 +0.6
79,561 + MPMX19_06813 0.69 -2.3
79,561 + MPMX19_06813 0.69 +1.0
79,561 + MPMX19_06813 0.69 -0.5
79,561 + MPMX19_06813 0.69 -0.3
79,561 + MPMX19_06813 0.69 -0.5
79,561 + MPMX19_06813 0.69 -0.6
79,562 - MPMX19_06813 0.69 +0.4
79,562 - MPMX19_06813 0.69 +0.6
79,562 - MPMX19_06813 0.69 -1.7
79,562 - MPMX19_06813 0.69 -0.6

Or see this region's nucleotide sequence