Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_05397

Experiment: MGL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_05395 and MPMX19_05396 overlap by 8 nucleotidesMPMX19_05396 and MPMX19_05397 overlap by 14 nucleotidesMPMX19_05397 and MPMX19_05398 are separated by 49 nucleotides MPMX19_05395: MPMX19_05395 - L-cystine transport system permease protein TcyB, at 74,325 to 74,999 _05395 MPMX19_05396: MPMX19_05396 - L-cystine transport system permease protein YecS, at 74,992 to 75,642 _05396 MPMX19_05397: MPMX19_05397 - Glutamine transport ATP-binding protein GlnQ, at 75,629 to 76,408 _05397 MPMX19_05398: MPMX19_05398 - HTH-type transcriptional regulatory protein GabR, at 76,458 to 77,972 _05398 Position (kb) 75 76 77Strain fitness (log2 ratio) -2 -1 0 1 2at 74.634 kb on + strand, within MPMX19_05395at 74.733 kb on + strand, within MPMX19_05395at 74.733 kb on + strand, within MPMX19_05395at 74.733 kb on + strand, within MPMX19_05395at 74.733 kb on + strand, within MPMX19_05395at 74.733 kb on + strand, within MPMX19_05395at 74.733 kb on + strand, within MPMX19_05395at 74.734 kb on - strand, within MPMX19_05395at 74.734 kb on - strand, within MPMX19_05395at 74.734 kb on - strand, within MPMX19_05395at 74.734 kb on - strand, within MPMX19_05395at 74.734 kb on - strand, within MPMX19_05395at 74.734 kb on - strand, within MPMX19_05395at 74.734 kb on - strand, within MPMX19_05395at 74.895 kb on + strand, within MPMX19_05395at 74.895 kb on + strand, within MPMX19_05395at 74.895 kb on + strand, within MPMX19_05395at 74.895 kb on + strand, within MPMX19_05395at 74.896 kb on - strand, within MPMX19_05395at 74.896 kb on - strand, within MPMX19_05395at 74.896 kb on - strand, within MPMX19_05395at 74.896 kb on - strand, within MPMX19_05395at 74.896 kb on - strand, within MPMX19_05395at 74.896 kb on - strand, within MPMX19_05395at 74.896 kb on - strand, within MPMX19_05395at 74.916 kb on + strand, within MPMX19_05395at 74.916 kb on + strand, within MPMX19_05395at 74.916 kb on + strand, within MPMX19_05395at 74.916 kb on + strand, within MPMX19_05395at 74.916 kb on + strand, within MPMX19_05395at 74.917 kb on - strand, within MPMX19_05395at 74.917 kb on - strand, within MPMX19_05395at 74.917 kb on - strand, within MPMX19_05395at 75.289 kb on + strand, within MPMX19_05396at 75.289 kb on + strand, within MPMX19_05396at 75.289 kb on + strand, within MPMX19_05396at 75.289 kb on + strand, within MPMX19_05396at 75.290 kb on - strand, within MPMX19_05396at 75.290 kb on - strand, within MPMX19_05396at 75.290 kb on - strand, within MPMX19_05396at 75.290 kb on - strand, within MPMX19_05396at 75.290 kb on - strand, within MPMX19_05396at 75.550 kb on + strand, within MPMX19_05396at 75.550 kb on + strand, within MPMX19_05396at 75.550 kb on + strand, within MPMX19_05396at 75.550 kb on + strand, within MPMX19_05396at 75.550 kb on + strand, within MPMX19_05396at 75.550 kb on + strand, within MPMX19_05396at 75.551 kb on - strand, within MPMX19_05396at 75.551 kb on - strand, within MPMX19_05396at 75.551 kb on - strand, within MPMX19_05396at 75.551 kb on - strand, within MPMX19_05396at 75.551 kb on - strand, within MPMX19_05396at 75.551 kb on - strand, within MPMX19_05396at 75.571 kb on + strand, within MPMX19_05396at 75.571 kb on + strand, within MPMX19_05396at 75.571 kb on + strand, within MPMX19_05396at 75.571 kb on + strand, within MPMX19_05396at 75.571 kb on + strand, within MPMX19_05396at 75.571 kb on + strand, within MPMX19_05396at 75.571 kb on + strand, within MPMX19_05396at 75.571 kb on + strand, within MPMX19_05396at 75.572 kb on - strand, within MPMX19_05396at 75.572 kb on - strand, within MPMX19_05396at 75.572 kb on - strand, within MPMX19_05396at 75.572 kb on - strand, within MPMX19_05396at 75.572 kb on - strand, within MPMX19_05396at 75.572 kb on - strand, within MPMX19_05396at 75.586 kb on + strandat 75.587 kb on - strandat 75.587 kb on - strandat 75.641 kb on - strandat 76.076 kb on + strand, within MPMX19_05397at 76.077 kb on - strand, within MPMX19_05397at 76.531 kb on + strandat 76.531 kb on + strandat 76.532 kb on - strandat 76.600 kb on + strandat 76.600 kb on + strandat 76.600 kb on + strandat 76.600 kb on + strandat 76.600 kb on + strandat 76.600 kb on + strandat 76.601 kb on - strandat 76.601 kb on - strandat 76.601 kb on - strandat 76.601 kb on - strandat 76.822 kb on + strand, within MPMX19_05398at 76.822 kb on + strand, within MPMX19_05398at 76.822 kb on + strand, within MPMX19_05398at 76.823 kb on - strand, within MPMX19_05398at 76.823 kb on - strand, within MPMX19_05398at 76.939 kb on + strand, within MPMX19_05398at 76.940 kb on - strand, within MPMX19_05398at 76.940 kb on - strand, within MPMX19_05398at 76.987 kb on + strand, within MPMX19_05398at 76.987 kb on + strand, within MPMX19_05398at 76.987 kb on + strand, within MPMX19_05398at 76.987 kb on + strand, within MPMX19_05398at 76.987 kb on + strand, within MPMX19_05398at 76.987 kb on + strand, within MPMX19_05398at 76.987 kb on + strand, within MPMX19_05398at 76.988 kb on - strand, within MPMX19_05398at 76.988 kb on - strand, within MPMX19_05398at 76.988 kb on - strand, within MPMX19_05398at 76.988 kb on - strand, within MPMX19_05398at 76.988 kb on - strand, within MPMX19_05398at 76.988 kb on - strand, within MPMX19_05398at 76.988 kb on - strand, within MPMX19_05398at 76.988 kb on - strand, within MPMX19_05398at 76.988 kb on - strand, within MPMX19_05398at 76.988 kb on - strand, within MPMX19_05398at 76.988 kb on - strand, within MPMX19_05398at 76.988 kb on - strand, within MPMX19_05398at 76.988 kb on - strand, within MPMX19_05398at 77.062 kb on + strand, within MPMX19_05398at 77.063 kb on - strand, within MPMX19_05398at 77.074 kb on + strand, within MPMX19_05398at 77.074 kb on + strand, within MPMX19_05398at 77.074 kb on + strand, within MPMX19_05398at 77.074 kb on + strand, within MPMX19_05398at 77.074 kb on + strand, within MPMX19_05398at 77.075 kb on - strand, within MPMX19_05398at 77.075 kb on - strand, within MPMX19_05398at 77.075 kb on - strand, within MPMX19_05398at 77.075 kb on - strand, within MPMX19_05398at 77.075 kb on - strand, within MPMX19_05398at 77.075 kb on - strand, within MPMX19_05398at 77.075 kb on - strand, within MPMX19_05398at 77.185 kb on + strand, within MPMX19_05398at 77.185 kb on + strand, within MPMX19_05398at 77.185 kb on + strand, within MPMX19_05398at 77.185 kb on + strand, within MPMX19_05398at 77.185 kb on + strand, within MPMX19_05398at 77.185 kb on + strand, within MPMX19_05398at 77.185 kb on + strand, within MPMX19_05398at 77.186 kb on - strand, within MPMX19_05398at 77.186 kb on - strand, within MPMX19_05398at 77.186 kb on - strand, within MPMX19_05398at 77.186 kb on - strand, within MPMX19_05398at 77.186 kb on - strand, within MPMX19_05398at 77.186 kb on - strand, within MPMX19_05398at 77.293 kb on + strand, within MPMX19_05398at 77.293 kb on + strand, within MPMX19_05398at 77.293 kb on + strand, within MPMX19_05398at 77.293 kb on + strand, within MPMX19_05398at 77.293 kb on + strand, within MPMX19_05398at 77.293 kb on + strand, within MPMX19_05398at 77.294 kb on - strand, within MPMX19_05398at 77.294 kb on - strand, within MPMX19_05398at 77.294 kb on - strand, within MPMX19_05398

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Per-strain Table

Position Strand Gene LocusTag Fraction MGL
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74,634 + MPMX19_05395 0.46 -0.3
74,733 + MPMX19_05395 0.60 -0.6
74,733 + MPMX19_05395 0.60 +0.7
74,733 + MPMX19_05395 0.60 +0.5
74,733 + MPMX19_05395 0.60 +0.5
74,733 + MPMX19_05395 0.60 -1.0
74,733 + MPMX19_05395 0.60 +0.2
74,734 - MPMX19_05395 0.61 +0.7
74,734 - MPMX19_05395 0.61 -0.4
74,734 - MPMX19_05395 0.61 -0.7
74,734 - MPMX19_05395 0.61 -0.3
74,734 - MPMX19_05395 0.61 -0.7
74,734 - MPMX19_05395 0.61 -1.4
74,734 - MPMX19_05395 0.61 -1.3
74,895 + MPMX19_05395 0.84 -0.7
74,895 + MPMX19_05395 0.84 +0.2
74,895 + MPMX19_05395 0.84 +2.1
74,895 + MPMX19_05395 0.84 -1.1
74,896 - MPMX19_05395 0.85 -1.3
74,896 - MPMX19_05395 0.85 -0.5
74,896 - MPMX19_05395 0.85 -1.5
74,896 - MPMX19_05395 0.85 +0.5
74,896 - MPMX19_05395 0.85 -1.0
74,896 - MPMX19_05395 0.85 -1.5
74,896 - MPMX19_05395 0.85 +0.1
74,916 + MPMX19_05395 0.88 -0.2
74,916 + MPMX19_05395 0.88 +0.2
74,916 + MPMX19_05395 0.88 -0.4
74,916 + MPMX19_05395 0.88 -0.5
74,916 + MPMX19_05395 0.88 -0.1
74,917 - MPMX19_05395 0.88 -1.4
74,917 - MPMX19_05395 0.88 -0.7
74,917 - MPMX19_05395 0.88 +0.4
75,289 + MPMX19_05396 0.46 +0.2
75,289 + MPMX19_05396 0.46 -0.4
75,289 + MPMX19_05396 0.46 -1.0
75,289 + MPMX19_05396 0.46 -0.9
75,290 - MPMX19_05396 0.46 -0.0
75,290 - MPMX19_05396 0.46 -2.1
75,290 - MPMX19_05396 0.46 +0.3
75,290 - MPMX19_05396 0.46 -0.6
75,290 - MPMX19_05396 0.46 -0.9
75,550 + MPMX19_05396 0.86 -0.5
75,550 + MPMX19_05396 0.86 -0.9
75,550 + MPMX19_05396 0.86 +0.9
75,550 + MPMX19_05396 0.86 -1.4
75,550 + MPMX19_05396 0.86 -1.0
75,550 + MPMX19_05396 0.86 -2.3
75,551 - MPMX19_05396 0.86 -0.1
75,551 - MPMX19_05396 0.86 +0.4
75,551 - MPMX19_05396 0.86 +0.5
75,551 - MPMX19_05396 0.86 -0.7
75,551 - MPMX19_05396 0.86 -1.0
75,551 - MPMX19_05396 0.86 -0.1
75,571 + MPMX19_05396 0.89 -1.2
75,571 + MPMX19_05396 0.89 +0.3
75,571 + MPMX19_05396 0.89 -1.4
75,571 + MPMX19_05396 0.89 -0.5
75,571 + MPMX19_05396 0.89 -0.5
75,571 + MPMX19_05396 0.89 +2.5
75,571 + MPMX19_05396 0.89 +0.0
75,571 + MPMX19_05396 0.89 -1.0
75,572 - MPMX19_05396 0.89 +2.5
75,572 - MPMX19_05396 0.89 -0.3
75,572 - MPMX19_05396 0.89 -0.2
75,572 - MPMX19_05396 0.89 +0.5
75,572 - MPMX19_05396 0.89 -0.1
75,572 - MPMX19_05396 0.89 -1.0
75,586 + -0.4
75,587 - +0.4
75,587 - -0.1
75,641 - -0.3
76,076 + MPMX19_05397 0.57 -1.2
76,077 - MPMX19_05397 0.57 -0.7
76,531 + +0.0
76,531 + -0.2
76,532 - -1.9
76,600 + -1.5
76,600 + -1.1
76,600 + -0.6
76,600 + -0.5
76,600 + +0.0
76,600 + +0.0
76,601 - -1.7
76,601 - -0.7
76,601 - -1.7
76,601 - +0.0
76,822 + MPMX19_05398 0.24 +0.2
76,822 + MPMX19_05398 0.24 -0.1
76,822 + MPMX19_05398 0.24 -1.4
76,823 - MPMX19_05398 0.24 -0.5
76,823 - MPMX19_05398 0.24 +0.4
76,939 + MPMX19_05398 0.32 +0.2
76,940 - MPMX19_05398 0.32 -2.3
76,940 - MPMX19_05398 0.32 -2.7
76,987 + MPMX19_05398 0.35 +1.3
76,987 + MPMX19_05398 0.35 +0.7
76,987 + MPMX19_05398 0.35 -0.3
76,987 + MPMX19_05398 0.35 -1.7
76,987 + MPMX19_05398 0.35 +0.7
76,987 + MPMX19_05398 0.35 -0.1
76,987 + MPMX19_05398 0.35 -1.2
76,988 - MPMX19_05398 0.35 -1.7
76,988 - MPMX19_05398 0.35 -1.9
76,988 - MPMX19_05398 0.35 +1.0
76,988 - MPMX19_05398 0.35 -0.8
76,988 - MPMX19_05398 0.35 -1.7
76,988 - MPMX19_05398 0.35 -1.9
76,988 - MPMX19_05398 0.35 +0.7
76,988 - MPMX19_05398 0.35 -0.2
76,988 - MPMX19_05398 0.35 -0.7
76,988 - MPMX19_05398 0.35 -0.7
76,988 - MPMX19_05398 0.35 -1.7
76,988 - MPMX19_05398 0.35 -1.9
76,988 - MPMX19_05398 0.35 -1.4
77,062 + MPMX19_05398 0.40 -0.3
77,063 - MPMX19_05398 0.40 +0.4
77,074 + MPMX19_05398 0.41 +0.9
77,074 + MPMX19_05398 0.41 -1.3
77,074 + MPMX19_05398 0.41 -0.5
77,074 + MPMX19_05398 0.41 -0.8
77,074 + MPMX19_05398 0.41 -0.7
77,075 - MPMX19_05398 0.41 -1.2
77,075 - MPMX19_05398 0.41 +0.0
77,075 - MPMX19_05398 0.41 +0.7
77,075 - MPMX19_05398 0.41 +0.0
77,075 - MPMX19_05398 0.41 -0.3
77,075 - MPMX19_05398 0.41 -0.4
77,075 - MPMX19_05398 0.41 -0.1
77,185 + MPMX19_05398 0.48 -1.0
77,185 + MPMX19_05398 0.48 -0.5
77,185 + MPMX19_05398 0.48 -0.7
77,185 + MPMX19_05398 0.48 -0.5
77,185 + MPMX19_05398 0.48 -1.4
77,185 + MPMX19_05398 0.48 +1.2
77,185 + MPMX19_05398 0.48 -1.6
77,186 - MPMX19_05398 0.48 -1.1
77,186 - MPMX19_05398 0.48 -0.1
77,186 - MPMX19_05398 0.48 +0.5
77,186 - MPMX19_05398 0.48 -1.1
77,186 - MPMX19_05398 0.48 -0.7
77,186 - MPMX19_05398 0.48 -0.7
77,293 + MPMX19_05398 0.55 -0.1
77,293 + MPMX19_05398 0.55 +0.6
77,293 + MPMX19_05398 0.55 -0.5
77,293 + MPMX19_05398 0.55 -0.3
77,293 + MPMX19_05398 0.55 -1.6
77,293 + MPMX19_05398 0.55 -0.5
77,294 - MPMX19_05398 0.55 -0.5
77,294 - MPMX19_05398 0.55 +0.2
77,294 - MPMX19_05398 0.55 -0.3

Or see this region's nucleotide sequence