Experiment: MGL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_04769 and MPMX19_04770 are separated by 111 nucleotides MPMX19_04770 and MPMX19_04771 are separated by 193 nucleotides
MPMX19_04769: MPMX19_04769 - Apulose-4-phosphate transketolase subunit B, at 159,785 to 160,801
_04769
MPMX19_04770: MPMX19_04770 - Sialic acid-binding periplasmic protein SiaP, at 160,913 to 161,953
_04770
MPMX19_04771: MPMX19_04771 - Sialic acid TRAP transporter permease protein SiaT, at 162,147 to 164,039
_04771
Position (kb) 160
161
162 Strain fitness (log2 ratio) -2
-1
0
1
2 at 159.968 kb on + strand, within MPMX19_04769 at 159.968 kb on + strand, within MPMX19_04769 at 159.968 kb on + strand, within MPMX19_04769 at 159.968 kb on + strand, within MPMX19_04769 at 159.968 kb on + strand, within MPMX19_04769 at 159.968 kb on + strand, within MPMX19_04769 at 159.968 kb on + strand, within MPMX19_04769 at 159.969 kb on - strand, within MPMX19_04769 at 159.969 kb on - strand, within MPMX19_04769 at 159.969 kb on - strand, within MPMX19_04769 at 159.969 kb on - strand, within MPMX19_04769 at 159.969 kb on - strand, within MPMX19_04769 at 160.013 kb on + strand, within MPMX19_04769 at 160.013 kb on + strand, within MPMX19_04769 at 160.013 kb on + strand, within MPMX19_04769 at 160.014 kb on - strand, within MPMX19_04769 at 160.014 kb on - strand, within MPMX19_04769 at 160.014 kb on - strand, within MPMX19_04769 at 160.014 kb on - strand, within MPMX19_04769 at 160.014 kb on - strand, within MPMX19_04769 at 160.014 kb on - strand, within MPMX19_04769 at 160.097 kb on + strand, within MPMX19_04769 at 160.097 kb on + strand, within MPMX19_04769 at 160.097 kb on + strand, within MPMX19_04769 at 160.097 kb on + strand, within MPMX19_04769 at 160.097 kb on + strand, within MPMX19_04769 at 160.097 kb on + strand, within MPMX19_04769 at 160.097 kb on + strand, within MPMX19_04769 at 160.125 kb on - strand, within MPMX19_04769 at 160.125 kb on - strand, within MPMX19_04769 at 160.125 kb on - strand, within MPMX19_04769 at 160.125 kb on - strand, within MPMX19_04769 at 160.340 kb on + strand, within MPMX19_04769 at 160.340 kb on + strand, within MPMX19_04769 at 160.340 kb on + strand, within MPMX19_04769 at 160.340 kb on + strand, within MPMX19_04769 at 160.340 kb on + strand, within MPMX19_04769 at 160.341 kb on - strand, within MPMX19_04769 at 160.341 kb on - strand, within MPMX19_04769 at 160.341 kb on - strand, within MPMX19_04769 at 160.341 kb on - strand, within MPMX19_04769 at 160.341 kb on - strand, within MPMX19_04769 at 160.341 kb on - strand, within MPMX19_04769 at 160.341 kb on - strand, within MPMX19_04769 at 160.342 kb on + strand, within MPMX19_04769 at 160.342 kb on + strand, within MPMX19_04769 at 160.343 kb on - strand, within MPMX19_04769 at 160.343 kb on - strand, within MPMX19_04769 at 160.343 kb on - strand, within MPMX19_04769 at 160.385 kb on + strand, within MPMX19_04769 at 160.386 kb on - strand, within MPMX19_04769 at 160.386 kb on - strand, within MPMX19_04769 at 160.391 kb on + strand, within MPMX19_04769 at 160.392 kb on - strand, within MPMX19_04769 at 160.392 kb on - strand, within MPMX19_04769 at 160.751 kb on + strand at 160.751 kb on + strand at 160.752 kb on - strand at 160.752 kb on - strand at 160.752 kb on - strand at 160.800 kb on - strand at 160.800 kb on - strand at 160.892 kb on + strand at 160.892 kb on + strand at 160.892 kb on + strand at 160.892 kb on + strand at 160.892 kb on + strand at 160.892 kb on + strand at 160.892 kb on + strand at 160.892 kb on + strand at 160.892 kb on + strand at 160.892 kb on + strand at 160.892 kb on + strand at 160.892 kb on + strand at 160.892 kb on + strand at 160.892 kb on + strand at 160.893 kb on - strand at 160.893 kb on - strand at 160.893 kb on - strand at 160.893 kb on - strand at 160.893 kb on - strand at 160.893 kb on - strand at 160.893 kb on - strand at 160.893 kb on - strand at 160.893 kb on - strand at 160.893 kb on - strand at 160.893 kb on - strand at 160.893 kb on - strand at 160.893 kb on - strand at 160.893 kb on - strand at 160.893 kb on - strand at 161.012 kb on + strand at 161.013 kb on - strand at 161.045 kb on + strand, within MPMX19_04770 at 161.045 kb on + strand, within MPMX19_04770 at 161.045 kb on + strand, within MPMX19_04770 at 161.045 kb on + strand, within MPMX19_04770 at 161.046 kb on - strand, within MPMX19_04770 at 161.046 kb on - strand, within MPMX19_04770 at 161.046 kb on - strand, within MPMX19_04770 at 161.046 kb on - strand, within MPMX19_04770 at 161.046 kb on - strand, within MPMX19_04770 at 161.046 kb on - strand, within MPMX19_04770 at 161.294 kb on + strand, within MPMX19_04770 at 161.294 kb on + strand, within MPMX19_04770 at 161.294 kb on + strand, within MPMX19_04770 at 161.294 kb on + strand, within MPMX19_04770 at 161.294 kb on + strand, within MPMX19_04770 at 161.295 kb on - strand, within MPMX19_04770 at 161.295 kb on - strand, within MPMX19_04770 at 161.295 kb on - strand, within MPMX19_04770 at 161.295 kb on - strand, within MPMX19_04770 at 161.295 kb on - strand, within MPMX19_04770 at 161.546 kb on + strand, within MPMX19_04770 at 161.546 kb on + strand, within MPMX19_04770 at 161.546 kb on + strand, within MPMX19_04770 at 161.546 kb on + strand, within MPMX19_04770 at 161.547 kb on - strand, within MPMX19_04770 at 161.618 kb on + strand, within MPMX19_04770 at 161.618 kb on + strand, within MPMX19_04770 at 161.666 kb on + strand, within MPMX19_04770 at 161.667 kb on - strand, within MPMX19_04770 at 161.879 kb on + strand at 161.879 kb on + strand at 161.879 kb on + strand at 161.880 kb on - strand at 161.880 kb on - strand at 161.901 kb on - strand at 161.901 kb on - strand at 161.901 kb on - strand at 161.901 kb on - strand at 161.901 kb on - strand at 162.075 kb on + strand at 162.324 kb on + strand at 162.325 kb on - strand at 162.428 kb on + strand, within MPMX19_04771 at 162.428 kb on + strand, within MPMX19_04771 at 162.428 kb on + strand, within MPMX19_04771 at 162.428 kb on + strand, within MPMX19_04771 at 162.429 kb on - strand, within MPMX19_04771 at 162.429 kb on - strand, within MPMX19_04771 at 162.429 kb on - strand, within MPMX19_04771 at 162.429 kb on - strand, within MPMX19_04771 at 162.429 kb on - strand, within MPMX19_04771 at 162.540 kb on + strand, within MPMX19_04771 at 162.541 kb on - strand, within MPMX19_04771 at 162.861 kb on + strand, within MPMX19_04771
Per-strain Table
Position Strand Gene LocusTag Fraction MGL remove 159,968 + MPMX19_04769 0.18 +2.6 159,968 + MPMX19_04769 0.18 +0.9 159,968 + MPMX19_04769 0.18 -1.0 159,968 + MPMX19_04769 0.18 +0.6 159,968 + MPMX19_04769 0.18 +1.0 159,968 + MPMX19_04769 0.18 +1.2 159,968 + MPMX19_04769 0.18 -0.1 159,969 - MPMX19_04769 0.18 -1.0 159,969 - MPMX19_04769 0.18 +0.4 159,969 - MPMX19_04769 0.18 -1.0 159,969 - MPMX19_04769 0.18 -1.3 159,969 - MPMX19_04769 0.18 +0.3 160,013 + MPMX19_04769 0.22 -0.2 160,013 + MPMX19_04769 0.22 -0.3 160,013 + MPMX19_04769 0.22 +0.6 160,014 - MPMX19_04769 0.23 +1.3 160,014 - MPMX19_04769 0.23 -0.3 160,014 - MPMX19_04769 0.23 +0.1 160,014 - MPMX19_04769 0.23 -0.9 160,014 - MPMX19_04769 0.23 +0.1 160,014 - MPMX19_04769 0.23 -1.0 160,097 + MPMX19_04769 0.31 -1.1 160,097 + MPMX19_04769 0.31 +0.0 160,097 + MPMX19_04769 0.31 +0.6 160,097 + MPMX19_04769 0.31 -0.6 160,097 + MPMX19_04769 0.31 -0.7 160,097 + MPMX19_04769 0.31 -0.9 160,097 + MPMX19_04769 0.31 -1.4 160,125 - MPMX19_04769 0.33 -1.1 160,125 - MPMX19_04769 0.33 -0.2 160,125 - MPMX19_04769 0.33 -0.3 160,125 - MPMX19_04769 0.33 +0.5 160,340 + MPMX19_04769 0.55 -0.6 160,340 + MPMX19_04769 0.55 -0.8 160,340 + MPMX19_04769 0.55 -0.9 160,340 + MPMX19_04769 0.55 +0.0 160,340 + MPMX19_04769 0.55 -1.0 160,341 - MPMX19_04769 0.55 -1.6 160,341 - MPMX19_04769 0.55 -1.0 160,341 - MPMX19_04769 0.55 +0.1 160,341 - MPMX19_04769 0.55 +0.8 160,341 - MPMX19_04769 0.55 -0.2 160,341 - MPMX19_04769 0.55 +1.0 160,341 - MPMX19_04769 0.55 +0.3 160,342 + MPMX19_04769 0.55 -1.0 160,342 + MPMX19_04769 0.55 -1.1 160,343 - MPMX19_04769 0.55 -1.8 160,343 - MPMX19_04769 0.55 +0.5 160,343 - MPMX19_04769 0.55 +0.8 160,385 + MPMX19_04769 0.59 -0.9 160,386 - MPMX19_04769 0.59 -1.4 160,386 - MPMX19_04769 0.59 +0.3 160,391 + MPMX19_04769 0.60 -0.2 160,392 - MPMX19_04769 0.60 +0.8 160,392 - MPMX19_04769 0.60 +0.4 160,751 + -1.7 160,751 + +0.0 160,752 - +0.0 160,752 - +0.0 160,752 - -0.6 160,800 - +0.4 160,800 - -2.0 160,892 + -1.0 160,892 + +1.6 160,892 + +1.2 160,892 + -0.1 160,892 + -1.9 160,892 + -1.2 160,892 + +0.3 160,892 + +0.3 160,892 + -0.7 160,892 + -1.0 160,892 + +0.6 160,892 + +0.9 160,892 + -0.4 160,892 + -1.6 160,893 - -1.1 160,893 - -0.4 160,893 - -0.1 160,893 - -0.7 160,893 - +0.3 160,893 - +0.0 160,893 - +0.3 160,893 - +0.3 160,893 - -0.7 160,893 - -1.7 160,893 - +0.0 160,893 - -0.4 160,893 - +1.0 160,893 - -0.4 160,893 - +1.0 161,012 + -1.9 161,013 - +0.0 161,045 + MPMX19_04770 0.13 +0.8 161,045 + MPMX19_04770 0.13 +0.9 161,045 + MPMX19_04770 0.13 -1.9 161,045 + MPMX19_04770 0.13 -1.0 161,046 - MPMX19_04770 0.13 -0.4 161,046 - MPMX19_04770 0.13 +1.9 161,046 - MPMX19_04770 0.13 +1.0 161,046 - MPMX19_04770 0.13 -1.9 161,046 - MPMX19_04770 0.13 -0.7 161,046 - MPMX19_04770 0.13 +1.0 161,294 + MPMX19_04770 0.37 +2.1 161,294 + MPMX19_04770 0.37 +0.0 161,294 + MPMX19_04770 0.37 +0.4 161,294 + MPMX19_04770 0.37 -0.7 161,294 + MPMX19_04770 0.37 +0.6 161,295 - MPMX19_04770 0.37 -2.0 161,295 - MPMX19_04770 0.37 +0.4 161,295 - MPMX19_04770 0.37 +0.8 161,295 - MPMX19_04770 0.37 -1.3 161,295 - MPMX19_04770 0.37 +0.3 161,546 + MPMX19_04770 0.61 -0.9 161,546 + MPMX19_04770 0.61 -0.7 161,546 + MPMX19_04770 0.61 +1.4 161,546 + MPMX19_04770 0.61 +0.0 161,547 - MPMX19_04770 0.61 +0.9 161,618 + MPMX19_04770 0.68 +0.7 161,618 + MPMX19_04770 0.68 -1.1 161,666 + MPMX19_04770 0.72 -1.1 161,667 - MPMX19_04770 0.72 -0.6 161,879 + -0.6 161,879 + +0.2 161,879 + -1.2 161,880 - -1.5 161,880 - +0.6 161,901 - -1.2 161,901 - -0.7 161,901 - -0.4 161,901 - -1.6 161,901 - +0.0 162,075 + -1.4 162,324 + -0.4 162,325 - -0.9 162,428 + MPMX19_04771 0.15 -0.2 162,428 + MPMX19_04771 0.15 -0.3 162,428 + MPMX19_04771 0.15 -0.9 162,428 + MPMX19_04771 0.15 +0.0 162,429 - MPMX19_04771 0.15 -0.4 162,429 - MPMX19_04771 0.15 +1.1 162,429 - MPMX19_04771 0.15 -0.4 162,429 - MPMX19_04771 0.15 -1.0 162,429 - MPMX19_04771 0.15 -0.6 162,540 + MPMX19_04771 0.21 +0.2 162,541 - MPMX19_04771 0.21 -0.6 162,861 + MPMX19_04771 0.38 +1.0
Or see this region's nucleotide sequence