Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04485

Experiment: MGL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04483 and MPMX19_04484 are separated by 105 nucleotidesMPMX19_04484 and MPMX19_04485 are separated by 33 nucleotidesMPMX19_04485 and MPMX19_04486 are separated by 80 nucleotidesMPMX19_04486 and MPMX19_04487 overlap by 14 nucleotides MPMX19_04483: MPMX19_04483 - N-alpha-acetyl-L-2,4-diaminobutyric acid deacetylase, at 850,803 to 851,837 _04483 MPMX19_04484: MPMX19_04484 - 2-iminobutanoate/2-iminopropanoate deaminase, at 851,943 to 852,287 _04484 MPMX19_04485: MPMX19_04485 - ABC transporter glutamine-binding protein GlnH, at 852,321 to 853,121 _04485 MPMX19_04486: MPMX19_04486 - Glutamine transport ATP-binding protein GlnQ, at 853,202 to 853,930 _04486 MPMX19_04487: MPMX19_04487 - L-cystine transport system permease protein YecS, at 853,917 to 854,567 _04487 Position (kb) 852 853 854Strain fitness (log2 ratio) -2 -1 0 1at 851.656 kb on + strand, within MPMX19_04483at 851.656 kb on + strand, within MPMX19_04483at 851.656 kb on + strand, within MPMX19_04483at 851.656 kb on + strand, within MPMX19_04483at 851.656 kb on + strand, within MPMX19_04483at 851.657 kb on - strand, within MPMX19_04483at 851.657 kb on - strand, within MPMX19_04483at 851.740 kb on + strandat 851.741 kb on - strandat 851.741 kb on - strandat 851.741 kb on - strandat 851.741 kb on - strandat 851.743 kb on + strandat 851.744 kb on - strandat 851.744 kb on - strandat 851.744 kb on - strandat 851.744 kb on - strandat 851.821 kb on + strandat 851.822 kb on - strandat 851.822 kb on - strandat 851.944 kb on + strandat 851.944 kb on + strandat 851.944 kb on + strandat 851.945 kb on - strandat 851.945 kb on - strandat 851.945 kb on - strandat 852.049 kb on + strand, within MPMX19_04484at 852.049 kb on + strand, within MPMX19_04484at 852.049 kb on + strand, within MPMX19_04484at 852.049 kb on + strand, within MPMX19_04484at 852.049 kb on + strand, within MPMX19_04484at 852.049 kb on + strand, within MPMX19_04484at 852.049 kb on + strand, within MPMX19_04484at 852.049 kb on + strand, within MPMX19_04484at 852.049 kb on + strand, within MPMX19_04484at 852.049 kb on + strand, within MPMX19_04484at 852.050 kb on - strand, within MPMX19_04484at 852.050 kb on - strand, within MPMX19_04484at 852.050 kb on - strand, within MPMX19_04484at 852.050 kb on - strand, within MPMX19_04484at 852.050 kb on - strand, within MPMX19_04484at 852.050 kb on - strand, within MPMX19_04484at 852.050 kb on - strand, within MPMX19_04484at 852.050 kb on - strand, within MPMX19_04484at 852.050 kb on - strand, within MPMX19_04484at 852.050 kb on - strand, within MPMX19_04484at 852.050 kb on - strand, within MPMX19_04484at 852.322 kb on + strandat 852.322 kb on + strandat 852.322 kb on + strandat 852.322 kb on + strandat 852.323 kb on - strandat 852.323 kb on - strandat 852.323 kb on - strandat 852.323 kb on - strandat 852.398 kb on - strandat 852.398 kb on - strandat 852.574 kb on + strand, within MPMX19_04485at 852.574 kb on + strand, within MPMX19_04485at 852.574 kb on + strand, within MPMX19_04485at 852.574 kb on + strand, within MPMX19_04485at 852.575 kb on - strand, within MPMX19_04485at 852.733 kb on + strand, within MPMX19_04485at 852.733 kb on + strand, within MPMX19_04485at 852.733 kb on + strand, within MPMX19_04485at 852.733 kb on + strand, within MPMX19_04485at 852.733 kb on + strand, within MPMX19_04485at 852.734 kb on - strand, within MPMX19_04485at 852.734 kb on - strand, within MPMX19_04485at 852.757 kb on + strand, within MPMX19_04485at 852.757 kb on + strand, within MPMX19_04485at 852.757 kb on + strand, within MPMX19_04485at 852.757 kb on + strand, within MPMX19_04485at 852.757 kb on + strand, within MPMX19_04485at 852.758 kb on - strand, within MPMX19_04485at 852.758 kb on - strand, within MPMX19_04485at 853.527 kb on + strand, within MPMX19_04486at 853.893 kb on + strandat 853.893 kb on + strandat 853.893 kb on + strandat 853.893 kb on + strandat 853.893 kb on + strandat 853.893 kb on + strandat 853.894 kb on - strandat 853.894 kb on - strandat 853.894 kb on - strandat 853.894 kb on - strandat 853.894 kb on - strandat 853.894 kb on - strandat 853.894 kb on - strandat 853.894 kb on - strandat 853.894 kb on - strandat 853.894 kb on - strandat 853.903 kb on + strandat 853.903 kb on + strandat 853.987 kb on + strand, within MPMX19_04487at 853.987 kb on + strand, within MPMX19_04487at 853.987 kb on + strand, within MPMX19_04487at 853.988 kb on - strand, within MPMX19_04487at 853.988 kb on - strand, within MPMX19_04487at 853.988 kb on - strand, within MPMX19_04487at 853.988 kb on - strand, within MPMX19_04487at 853.988 kb on - strand, within MPMX19_04487at 853.988 kb on - strand, within MPMX19_04487at 853.988 kb on - strand, within MPMX19_04487at 854.008 kb on + strand, within MPMX19_04487at 854.008 kb on + strand, within MPMX19_04487at 854.009 kb on - strand, within MPMX19_04487

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Per-strain Table

Position Strand Gene LocusTag Fraction MGL
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851,656 + MPMX19_04483 0.82 -0.8
851,656 + MPMX19_04483 0.82 -0.3
851,656 + MPMX19_04483 0.82 -0.8
851,656 + MPMX19_04483 0.82 -1.2
851,656 + MPMX19_04483 0.82 -0.3
851,657 - MPMX19_04483 0.83 -0.6
851,657 - MPMX19_04483 0.83 -1.1
851,740 + -1.0
851,741 - -1.0
851,741 - -0.8
851,741 - -1.7
851,741 - -0.7
851,743 + +0.2
851,744 - -1.9
851,744 - -2.5
851,744 - -0.1
851,744 - -1.0
851,821 + -0.7
851,822 - -2.0
851,822 - -0.1
851,944 + -1.0
851,944 + -1.2
851,944 + +0.2
851,945 - +0.6
851,945 - -1.0
851,945 - -0.2
852,049 + MPMX19_04484 0.31 -0.8
852,049 + MPMX19_04484 0.31 +0.3
852,049 + MPMX19_04484 0.31 -0.7
852,049 + MPMX19_04484 0.31 -0.0
852,049 + MPMX19_04484 0.31 +0.2
852,049 + MPMX19_04484 0.31 -1.3
852,049 + MPMX19_04484 0.31 -0.8
852,049 + MPMX19_04484 0.31 -0.1
852,049 + MPMX19_04484 0.31 -0.7
852,049 + MPMX19_04484 0.31 -1.0
852,050 - MPMX19_04484 0.31 +0.8
852,050 - MPMX19_04484 0.31 -1.7
852,050 - MPMX19_04484 0.31 -0.2
852,050 - MPMX19_04484 0.31 -1.2
852,050 - MPMX19_04484 0.31 -0.7
852,050 - MPMX19_04484 0.31 -2.4
852,050 - MPMX19_04484 0.31 -0.8
852,050 - MPMX19_04484 0.31 -0.7
852,050 - MPMX19_04484 0.31 -2.1
852,050 - MPMX19_04484 0.31 -0.2
852,050 - MPMX19_04484 0.31 -0.5
852,322 + -0.7
852,322 + -1.6
852,322 + -0.9
852,322 + +1.2
852,323 - -0.0
852,323 - -1.3
852,323 - +0.9
852,323 - -0.3
852,398 - -1.6
852,398 - -1.7
852,574 + MPMX19_04485 0.32 -0.1
852,574 + MPMX19_04485 0.32 +1.5
852,574 + MPMX19_04485 0.32 -0.9
852,574 + MPMX19_04485 0.32 -0.8
852,575 - MPMX19_04485 0.32 -2.3
852,733 + MPMX19_04485 0.51 -1.1
852,733 + MPMX19_04485 0.51 -0.8
852,733 + MPMX19_04485 0.51 +0.7
852,733 + MPMX19_04485 0.51 -0.3
852,733 + MPMX19_04485 0.51 +0.2
852,734 - MPMX19_04485 0.52 -0.7
852,734 - MPMX19_04485 0.52 -0.8
852,757 + MPMX19_04485 0.54 +0.0
852,757 + MPMX19_04485 0.54 -1.2
852,757 + MPMX19_04485 0.54 -0.1
852,757 + MPMX19_04485 0.54 -2.6
852,757 + MPMX19_04485 0.54 -0.6
852,758 - MPMX19_04485 0.55 +0.2
852,758 - MPMX19_04485 0.55 -0.1
853,527 + MPMX19_04486 0.45 -0.1
853,893 + +0.9
853,893 + -1.3
853,893 + +0.5
853,893 + -0.5
853,893 + +0.5
853,893 + -1.0
853,894 - -0.5
853,894 - -0.4
853,894 - -0.8
853,894 - -1.3
853,894 - +0.2
853,894 - -1.2
853,894 - -0.8
853,894 - +0.5
853,894 - -0.7
853,894 - -0.3
853,903 + -0.8
853,903 + -1.0
853,987 + MPMX19_04487 0.11 -0.1
853,987 + MPMX19_04487 0.11 -1.0
853,987 + MPMX19_04487 0.11 +1.5
853,988 - MPMX19_04487 0.11 -0.8
853,988 - MPMX19_04487 0.11 -0.5
853,988 - MPMX19_04487 0.11 +0.8
853,988 - MPMX19_04487 0.11 -1.9
853,988 - MPMX19_04487 0.11 -1.2
853,988 - MPMX19_04487 0.11 -2.7
853,988 - MPMX19_04487 0.11 -0.1
854,008 + MPMX19_04487 0.14 +0.6
854,008 + MPMX19_04487 0.14 -0.8
854,009 - MPMX19_04487 0.14 +0.7

Or see this region's nucleotide sequence