Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03376

Experiment: MGL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03375 and MPMX19_03376 are separated by 136 nucleotidesMPMX19_03376 and MPMX19_03377 are separated by 148 nucleotides MPMX19_03375: MPMX19_03375 - Outer membrane protein TolC, at 753,136 to 754,560 _03375 MPMX19_03376: MPMX19_03376 - hypothetical protein, at 754,697 to 760,675 _03376 MPMX19_03377: MPMX19_03377 - D-allose transport system permease protein AlsC, at 760,824 to 761,873 _03377 Position (kb) 754 755 756 757 758 759 760 761Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 753.713 kb on + strand, within MPMX19_03375at 753.713 kb on + strand, within MPMX19_03375at 753.714 kb on - strand, within MPMX19_03375at 753.714 kb on - strand, within MPMX19_03375at 753.714 kb on - strand, within MPMX19_03375at 753.714 kb on - strand, within MPMX19_03375at 753.732 kb on - strand, within MPMX19_03375at 753.917 kb on + strand, within MPMX19_03375at 753.917 kb on + strand, within MPMX19_03375at 753.917 kb on + strand, within MPMX19_03375at 753.917 kb on + strand, within MPMX19_03375at 753.918 kb on - strand, within MPMX19_03375at 753.918 kb on - strand, within MPMX19_03375at 753.918 kb on - strand, within MPMX19_03375at 754.018 kb on - strand, within MPMX19_03375at 754.028 kb on + strand, within MPMX19_03375at 754.133 kb on + strand, within MPMX19_03375at 754.134 kb on - strand, within MPMX19_03375at 754.134 kb on - strand, within MPMX19_03375at 754.365 kb on - strand, within MPMX19_03375at 754.554 kb on + strandat 754.554 kb on + strandat 754.555 kb on - strandat 754.555 kb on - strandat 754.555 kb on - strandat 754.555 kb on - strandat 754.555 kb on - strandat 754.555 kb on - strandat 754.595 kb on - strandat 754.595 kb on - strandat 754.595 kb on - strandat 754.620 kb on - strandat 754.620 kb on - strandat 754.633 kb on + strandat 754.633 kb on + strandat 754.634 kb on - strandat 754.634 kb on - strandat 754.634 kb on - strandat 754.635 kb on + strandat 754.635 kb on + strandat 754.635 kb on + strandat 754.636 kb on - strandat 754.636 kb on - strandat 754.636 kb on - strandat 754.636 kb on - strandat 754.643 kb on + strandat 754.669 kb on - strandat 754.671 kb on + strandat 754.671 kb on + strandat 754.698 kb on + strandat 754.712 kb on - strandat 754.729 kb on + strandat 754.729 kb on + strandat 754.817 kb on + strandat 754.817 kb on + strandat 754.817 kb on + strandat 754.817 kb on + strandat 754.817 kb on + strandat 754.818 kb on - strandat 754.820 kb on - strandat 754.820 kb on - strandat 754.820 kb on - strandat 754.820 kb on - strandat 754.820 kb on - strandat 755.092 kb on + strandat 755.613 kb on + strand, within MPMX19_03376at 755.614 kb on - strand, within MPMX19_03376at 755.856 kb on + strand, within MPMX19_03376at 755.856 kb on + strand, within MPMX19_03376at 755.856 kb on + strand, within MPMX19_03376at 755.856 kb on + strand, within MPMX19_03376at 755.856 kb on + strand, within MPMX19_03376at 755.856 kb on + strand, within MPMX19_03376at 755.856 kb on + strand, within MPMX19_03376at 755.856 kb on + strand, within MPMX19_03376at 755.856 kb on + strand, within MPMX19_03376at 755.856 kb on + strand, within MPMX19_03376at 755.856 kb on + strand, within MPMX19_03376at 755.857 kb on - strand, within MPMX19_03376at 755.857 kb on - strand, within MPMX19_03376at 755.857 kb on - strand, within MPMX19_03376at 756.066 kb on + strand, within MPMX19_03376at 756.066 kb on + strand, within MPMX19_03376at 756.066 kb on + strand, within MPMX19_03376at 756.067 kb on - strand, within MPMX19_03376at 756.067 kb on - strand, within MPMX19_03376at 756.171 kb on + strand, within MPMX19_03376at 756.171 kb on + strand, within MPMX19_03376at 756.474 kb on + strand, within MPMX19_03376at 756.474 kb on + strand, within MPMX19_03376at 756.475 kb on - strand, within MPMX19_03376at 756.475 kb on - strand, within MPMX19_03376at 756.475 kb on - strand, within MPMX19_03376at 756.475 kb on - strand, within MPMX19_03376at 756.475 kb on - strand, within MPMX19_03376at 756.488 kb on - strand, within MPMX19_03376at 756.488 kb on - strand, within MPMX19_03376at 756.489 kb on + strand, within MPMX19_03376at 756.489 kb on + strand, within MPMX19_03376at 756.489 kb on + strand, within MPMX19_03376at 756.489 kb on + strand, within MPMX19_03376at 756.489 kb on + strand, within MPMX19_03376at 756.489 kb on + strand, within MPMX19_03376at 756.489 kb on + strand, within MPMX19_03376at 756.489 kb on + strand, within MPMX19_03376at 756.489 kb on + strand, within MPMX19_03376at 756.489 kb on + strand, within MPMX19_03376at 756.490 kb on - strand, within MPMX19_03376at 756.490 kb on - strand, within MPMX19_03376at 756.490 kb on - strand, within MPMX19_03376at 756.490 kb on - strand, within MPMX19_03376at 756.490 kb on - strand, within MPMX19_03376at 756.490 kb on - strand, within MPMX19_03376at 756.490 kb on - strand, within MPMX19_03376at 756.490 kb on - strand, within MPMX19_03376at 756.798 kb on + strand, within MPMX19_03376at 756.798 kb on + strand, within MPMX19_03376at 756.798 kb on + strand, within MPMX19_03376at 756.798 kb on + strand, within MPMX19_03376at 756.798 kb on + strand, within MPMX19_03376at 756.798 kb on + strand, within MPMX19_03376at 756.798 kb on + strand, within MPMX19_03376at 756.798 kb on + strand, within MPMX19_03376at 756.798 kb on + strand, within MPMX19_03376at 756.798 kb on + strand, within MPMX19_03376at 756.798 kb on + strand, within MPMX19_03376at 756.798 kb on + strand, within MPMX19_03376at 756.799 kb on - strand, within MPMX19_03376at 756.799 kb on - strand, within MPMX19_03376at 756.799 kb on - strand, within MPMX19_03376at 756.933 kb on - strand, within MPMX19_03376at 756.933 kb on - strand, within MPMX19_03376at 756.933 kb on - strand, within MPMX19_03376at 757.011 kb on + strand, within MPMX19_03376at 757.011 kb on + strand, within MPMX19_03376at 757.012 kb on - strand, within MPMX19_03376at 757.415 kb on + strand, within MPMX19_03376at 757.415 kb on + strand, within MPMX19_03376at 757.476 kb on + strand, within MPMX19_03376at 757.477 kb on - strand, within MPMX19_03376at 757.477 kb on - strand, within MPMX19_03376at 757.477 kb on - strand, within MPMX19_03376at 757.655 kb on - strand, within MPMX19_03376at 757.731 kb on + strand, within MPMX19_03376at 757.731 kb on + strand, within MPMX19_03376at 757.731 kb on + strand, within MPMX19_03376at 757.732 kb on - strand, within MPMX19_03376at 757.732 kb on - strand, within MPMX19_03376at 757.732 kb on - strand, within MPMX19_03376at 757.948 kb on - strand, within MPMX19_03376at 757.948 kb on - strand, within MPMX19_03376at 757.948 kb on - strand, within MPMX19_03376at 757.948 kb on - strand, within MPMX19_03376at 758.421 kb on + strand, within MPMX19_03376at 758.421 kb on + strand, within MPMX19_03376at 758.421 kb on + strand, within MPMX19_03376at 758.421 kb on + strand, within MPMX19_03376at 758.422 kb on - strand, within MPMX19_03376at 758.422 kb on - strand, within MPMX19_03376at 759.065 kb on - strand, within MPMX19_03376at 760.720 kb on + strandat 760.720 kb on + strandat 760.721 kb on - strandat 760.747 kb on + strandat 760.772 kb on - strandat 760.788 kb on + strandat 760.909 kb on + strandat 760.909 kb on + strandat 760.910 kb on - strandat 760.910 kb on - strandat 760.910 kb on - strandat 760.910 kb on - strandat 760.910 kb on - strandat 761.137 kb on + strand, within MPMX19_03377at 761.137 kb on + strand, within MPMX19_03377at 761.137 kb on + strand, within MPMX19_03377at 761.137 kb on + strand, within MPMX19_03377at 761.137 kb on + strand, within MPMX19_03377at 761.137 kb on + strand, within MPMX19_03377at 761.137 kb on + strand, within MPMX19_03377at 761.137 kb on + strand, within MPMX19_03377at 761.137 kb on + strand, within MPMX19_03377at 761.137 kb on + strand, within MPMX19_03377at 761.137 kb on + strand, within MPMX19_03377at 761.137 kb on + strand, within MPMX19_03377at 761.137 kb on + strand, within MPMX19_03377at 761.138 kb on - strand, within MPMX19_03377at 761.138 kb on - strand, within MPMX19_03377at 761.138 kb on - strand, within MPMX19_03377at 761.138 kb on - strand, within MPMX19_03377at 761.138 kb on - strand, within MPMX19_03377at 761.138 kb on - strand, within MPMX19_03377at 761.138 kb on - strand, within MPMX19_03377at 761.138 kb on - strand, within MPMX19_03377at 761.138 kb on - strand, within MPMX19_03377at 761.138 kb on - strand, within MPMX19_03377at 761.138 kb on - strand, within MPMX19_03377at 761.138 kb on - strand, within MPMX19_03377at 761.209 kb on + strand, within MPMX19_03377at 761.209 kb on + strand, within MPMX19_03377at 761.209 kb on + strand, within MPMX19_03377at 761.210 kb on - strand, within MPMX19_03377at 761.210 kb on - strand, within MPMX19_03377at 761.210 kb on - strand, within MPMX19_03377at 761.210 kb on - strand, within MPMX19_03377at 761.210 kb on - strand, within MPMX19_03377at 761.210 kb on - strand, within MPMX19_03377at 761.210 kb on - strand, within MPMX19_03377at 761.662 kb on + strand, within MPMX19_03377at 761.662 kb on + strand, within MPMX19_03377at 761.662 kb on + strand, within MPMX19_03377at 761.663 kb on - strand, within MPMX19_03377

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Per-strain Table

Position Strand Gene LocusTag Fraction MGL
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753,713 + MPMX19_03375 0.40 -1.0
753,713 + MPMX19_03375 0.40 -0.7
753,714 - MPMX19_03375 0.41 -1.2
753,714 - MPMX19_03375 0.41 +0.1
753,714 - MPMX19_03375 0.41 +1.1
753,714 - MPMX19_03375 0.41 +0.6
753,732 - MPMX19_03375 0.42 +1.0
753,917 + MPMX19_03375 0.55 -0.9
753,917 + MPMX19_03375 0.55 -0.2
753,917 + MPMX19_03375 0.55 +0.5
753,917 + MPMX19_03375 0.55 -2.2
753,918 - MPMX19_03375 0.55 +0.3
753,918 - MPMX19_03375 0.55 -0.0
753,918 - MPMX19_03375 0.55 +0.1
754,018 - MPMX19_03375 0.62 +0.5
754,028 + MPMX19_03375 0.63 -1.5
754,133 + MPMX19_03375 0.70 +0.7
754,134 - MPMX19_03375 0.70 +1.6
754,134 - MPMX19_03375 0.70 -1.3
754,365 - MPMX19_03375 0.86 -0.2
754,554 + -1.3
754,554 + +0.1
754,555 - +1.0
754,555 - +0.3
754,555 - +0.6
754,555 - -0.0
754,555 - +0.3
754,555 - -0.8
754,595 - -0.4
754,595 - -0.0
754,595 - -0.2
754,620 - -0.0
754,620 - -0.0
754,633 + -0.0
754,633 + -0.4
754,634 - +1.0
754,634 - +1.3
754,634 - -0.9
754,635 + -2.0
754,635 + -0.9
754,635 + -0.1
754,636 - -2.6
754,636 - -0.0
754,636 - +0.2
754,636 - +0.6
754,643 + +0.1
754,669 - -1.8
754,671 + -0.2
754,671 + +2.3
754,698 + +0.4
754,712 - +0.3
754,729 + +0.4
754,729 + -0.5
754,817 + -0.5
754,817 + -1.0
754,817 + -0.6
754,817 + -0.5
754,817 + -1.2
754,818 - -1.0
754,820 - -1.2
754,820 - -1.4
754,820 - +1.0
754,820 - -0.1
754,820 - +0.1
755,092 + +0.3
755,613 + MPMX19_03376 0.15 -1.1
755,614 - MPMX19_03376 0.15 -0.9
755,856 + MPMX19_03376 0.19 -1.4
755,856 + MPMX19_03376 0.19 -0.4
755,856 + MPMX19_03376 0.19 -0.8
755,856 + MPMX19_03376 0.19 +1.4
755,856 + MPMX19_03376 0.19 -0.4
755,856 + MPMX19_03376 0.19 -0.4
755,856 + MPMX19_03376 0.19 -1.3
755,856 + MPMX19_03376 0.19 +1.6
755,856 + MPMX19_03376 0.19 -1.7
755,856 + MPMX19_03376 0.19 -0.8
755,856 + MPMX19_03376 0.19 +0.6
755,857 - MPMX19_03376 0.19 -0.3
755,857 - MPMX19_03376 0.19 -0.6
755,857 - MPMX19_03376 0.19 -1.4
756,066 + MPMX19_03376 0.23 -1.1
756,066 + MPMX19_03376 0.23 -0.4
756,066 + MPMX19_03376 0.23 -0.2
756,067 - MPMX19_03376 0.23 -0.1
756,067 - MPMX19_03376 0.23 -0.4
756,171 + MPMX19_03376 0.25 +1.3
756,171 + MPMX19_03376 0.25 -1.7
756,474 + MPMX19_03376 0.30 -0.7
756,474 + MPMX19_03376 0.30 -0.4
756,475 - MPMX19_03376 0.30 -1.1
756,475 - MPMX19_03376 0.30 -0.9
756,475 - MPMX19_03376 0.30 +0.8
756,475 - MPMX19_03376 0.30 -0.5
756,475 - MPMX19_03376 0.30 -1.0
756,488 - MPMX19_03376 0.30 -0.0
756,488 - MPMX19_03376 0.30 -1.9
756,489 + MPMX19_03376 0.30 -0.1
756,489 + MPMX19_03376 0.30 -0.5
756,489 + MPMX19_03376 0.30 +1.4
756,489 + MPMX19_03376 0.30 -3.5
756,489 + MPMX19_03376 0.30 -0.2
756,489 + MPMX19_03376 0.30 -2.0
756,489 + MPMX19_03376 0.30 -0.1
756,489 + MPMX19_03376 0.30 -1.4
756,489 + MPMX19_03376 0.30 -1.3
756,489 + MPMX19_03376 0.30 -0.7
756,490 - MPMX19_03376 0.30 +0.6
756,490 - MPMX19_03376 0.30 +1.1
756,490 - MPMX19_03376 0.30 -1.3
756,490 - MPMX19_03376 0.30 -1.2
756,490 - MPMX19_03376 0.30 -2.2
756,490 - MPMX19_03376 0.30 -0.9
756,490 - MPMX19_03376 0.30 -0.7
756,490 - MPMX19_03376 0.30 -0.3
756,798 + MPMX19_03376 0.35 -0.1
756,798 + MPMX19_03376 0.35 -0.5
756,798 + MPMX19_03376 0.35 -0.2
756,798 + MPMX19_03376 0.35 -0.6
756,798 + MPMX19_03376 0.35 -0.6
756,798 + MPMX19_03376 0.35 -0.2
756,798 + MPMX19_03376 0.35 -2.1
756,798 + MPMX19_03376 0.35 -0.7
756,798 + MPMX19_03376 0.35 -0.7
756,798 + MPMX19_03376 0.35 +0.3
756,798 + MPMX19_03376 0.35 -1.0
756,798 + MPMX19_03376 0.35 -0.7
756,799 - MPMX19_03376 0.35 -1.4
756,799 - MPMX19_03376 0.35 -1.3
756,799 - MPMX19_03376 0.35 -0.4
756,933 - MPMX19_03376 0.37 -1.4
756,933 - MPMX19_03376 0.37 -0.9
756,933 - MPMX19_03376 0.37 -1.4
757,011 + MPMX19_03376 0.39 +0.6
757,011 + MPMX19_03376 0.39 +0.1
757,012 - MPMX19_03376 0.39 -0.0
757,415 + MPMX19_03376 0.45 -1.1
757,415 + MPMX19_03376 0.45 -0.6
757,476 + MPMX19_03376 0.46 -0.8
757,477 - MPMX19_03376 0.46 -2.3
757,477 - MPMX19_03376 0.46 -0.4
757,477 - MPMX19_03376 0.46 -0.4
757,655 - MPMX19_03376 0.49 -2.3
757,731 + MPMX19_03376 0.51 +0.4
757,731 + MPMX19_03376 0.51 -2.6
757,731 + MPMX19_03376 0.51 +0.6
757,732 - MPMX19_03376 0.51 -0.8
757,732 - MPMX19_03376 0.51 +1.2
757,732 - MPMX19_03376 0.51 +0.6
757,948 - MPMX19_03376 0.54 -1.1
757,948 - MPMX19_03376 0.54 -2.4
757,948 - MPMX19_03376 0.54 -1.9
757,948 - MPMX19_03376 0.54 -0.9
758,421 + MPMX19_03376 0.62 -0.0
758,421 + MPMX19_03376 0.62 +0.6
758,421 + MPMX19_03376 0.62 -0.2
758,421 + MPMX19_03376 0.62 -0.6
758,422 - MPMX19_03376 0.62 -1.0
758,422 - MPMX19_03376 0.62 -0.5
759,065 - MPMX19_03376 0.73 -1.6
760,720 + -0.4
760,720 + +0.3
760,721 - -0.5
760,747 + -0.2
760,772 - -0.2
760,788 + -0.2
760,909 + -0.2
760,909 + -0.4
760,910 - -0.9
760,910 - +0.4
760,910 - -0.8
760,910 - +0.3
760,910 - -0.8
761,137 + MPMX19_03377 0.30 +0.1
761,137 + MPMX19_03377 0.30 -0.7
761,137 + MPMX19_03377 0.30 -1.5
761,137 + MPMX19_03377 0.30 -0.4
761,137 + MPMX19_03377 0.30 -0.6
761,137 + MPMX19_03377 0.30 -0.6
761,137 + MPMX19_03377 0.30 -0.4
761,137 + MPMX19_03377 0.30 +0.4
761,137 + MPMX19_03377 0.30 -0.8
761,137 + MPMX19_03377 0.30 -0.0
761,137 + MPMX19_03377 0.30 -0.2
761,137 + MPMX19_03377 0.30 -0.6
761,137 + MPMX19_03377 0.30 -1.5
761,138 - MPMX19_03377 0.30 +0.1
761,138 - MPMX19_03377 0.30 -1.0
761,138 - MPMX19_03377 0.30 -0.6
761,138 - MPMX19_03377 0.30 +1.0
761,138 - MPMX19_03377 0.30 -0.6
761,138 - MPMX19_03377 0.30 -0.2
761,138 - MPMX19_03377 0.30 -1.3
761,138 - MPMX19_03377 0.30 -0.1
761,138 - MPMX19_03377 0.30 +0.6
761,138 - MPMX19_03377 0.30 -0.9
761,138 - MPMX19_03377 0.30 -0.2
761,138 - MPMX19_03377 0.30 -0.6
761,209 + MPMX19_03377 0.37 -0.5
761,209 + MPMX19_03377 0.37 -0.1
761,209 + MPMX19_03377 0.37 -1.7
761,210 - MPMX19_03377 0.37 -0.9
761,210 - MPMX19_03377 0.37 -0.9
761,210 - MPMX19_03377 0.37 -1.1
761,210 - MPMX19_03377 0.37 -0.7
761,210 - MPMX19_03377 0.37 -0.7
761,210 - MPMX19_03377 0.37 +1.8
761,210 - MPMX19_03377 0.37 +0.1
761,662 + MPMX19_03377 0.80 -1.6
761,662 + MPMX19_03377 0.80 -0.4
761,662 + MPMX19_03377 0.80 +0.5
761,663 - MPMX19_03377 0.80 +0.7

Or see this region's nucleotide sequence