Experiment: MGL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_03221 and MPMX19_03222 overlap by 4 nucleotides MPMX19_03222 and MPMX19_03223 are separated by 226 nucleotides MPMX19_03223 and MPMX19_03224 are separated by 51 nucleotides
MPMX19_03221: MPMX19_03221 - Adaptive-response sensory-kinase SasA, at 521,321 to 522,673
_03221
MPMX19_03222: MPMX19_03222 - Transcriptional regulatory protein OmpR, at 522,670 to 523,410
_03222
MPMX19_03223: MPMX19_03223 - hypothetical protein, at 523,637 to 524,407
_03223
MPMX19_03224: MPMX19_03224 - Protein DipZ, at 524,459 to 526,234
_03224
Position (kb) 523
524
525 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 522.713 kb on + strand at 522.713 kb on + strand at 522.713 kb on + strand at 522.713 kb on + strand at 522.713 kb on + strand at 522.713 kb on + strand at 522.713 kb on + strand at 522.713 kb on + strand at 522.713 kb on + strand at 522.713 kb on + strand at 522.713 kb on + strand at 522.713 kb on + strand at 522.713 kb on + strand at 522.713 kb on + strand at 522.714 kb on - strand at 522.714 kb on - strand at 522.714 kb on - strand at 522.714 kb on - strand at 522.714 kb on - strand at 522.714 kb on - strand at 522.714 kb on - strand at 522.714 kb on - strand at 522.714 kb on - strand at 522.714 kb on - strand at 523.103 kb on + strand, within MPMX19_03222 at 523.104 kb on - strand, within MPMX19_03222 at 523.104 kb on - strand, within MPMX19_03222 at 523.341 kb on + strand at 523.344 kb on - strand at 523.442 kb on + strand at 523.442 kb on + strand at 523.442 kb on + strand at 523.442 kb on + strand at 523.442 kb on + strand at 523.442 kb on + strand at 523.442 kb on + strand at 523.442 kb on + strand at 523.442 kb on + strand at 523.442 kb on + strand at 523.442 kb on + strand at 523.442 kb on + strand at 523.442 kb on + strand at 523.443 kb on - strand at 523.443 kb on - strand at 523.443 kb on - strand at 523.443 kb on - strand at 523.443 kb on - strand at 523.443 kb on - strand at 523.443 kb on - strand at 523.443 kb on - strand at 523.443 kb on - strand at 523.443 kb on - strand at 523.489 kb on + strand at 523.489 kb on + strand at 523.489 kb on + strand at 523.490 kb on - strand at 523.490 kb on - strand at 523.508 kb on + strand at 523.508 kb on + strand at 523.508 kb on + strand at 523.509 kb on - strand at 523.509 kb on - strand at 523.509 kb on - strand at 523.509 kb on - strand at 523.537 kb on + strand at 523.538 kb on - strand at 523.630 kb on + strand at 523.630 kb on + strand at 523.630 kb on + strand at 523.630 kb on + strand at 523.630 kb on + strand at 523.631 kb on - strand at 523.631 kb on - strand at 523.631 kb on - strand at 523.631 kb on - strand at 523.631 kb on - strand at 523.631 kb on - strand at 523.631 kb on - strand at 523.805 kb on + strand, within MPMX19_03223 at 523.805 kb on + strand, within MPMX19_03223 at 523.806 kb on - strand, within MPMX19_03223 at 523.916 kb on + strand, within MPMX19_03223 at 523.916 kb on + strand, within MPMX19_03223 at 523.916 kb on + strand, within MPMX19_03223 at 523.916 kb on + strand, within MPMX19_03223 at 523.916 kb on + strand, within MPMX19_03223 at 523.917 kb on - strand, within MPMX19_03223 at 523.917 kb on - strand, within MPMX19_03223 at 523.917 kb on - strand, within MPMX19_03223 at 523.917 kb on - strand, within MPMX19_03223 at 523.917 kb on - strand, within MPMX19_03223 at 523.973 kb on + strand, within MPMX19_03223 at 523.973 kb on + strand, within MPMX19_03223 at 523.973 kb on + strand, within MPMX19_03223 at 523.973 kb on + strand, within MPMX19_03223 at 523.973 kb on + strand, within MPMX19_03223 at 523.973 kb on + strand, within MPMX19_03223 at 523.973 kb on + strand, within MPMX19_03223 at 523.973 kb on + strand, within MPMX19_03223 at 523.973 kb on + strand, within MPMX19_03223 at 523.973 kb on + strand, within MPMX19_03223 at 523.973 kb on + strand, within MPMX19_03223 at 523.974 kb on - strand, within MPMX19_03223 at 523.974 kb on - strand, within MPMX19_03223 at 523.974 kb on - strand, within MPMX19_03223 at 523.974 kb on - strand, within MPMX19_03223 at 523.974 kb on - strand, within MPMX19_03223 at 523.974 kb on - strand, within MPMX19_03223 at 523.974 kb on - strand, within MPMX19_03223 at 523.974 kb on - strand, within MPMX19_03223 at 524.081 kb on + strand, within MPMX19_03223 at 524.082 kb on - strand, within MPMX19_03223 at 524.082 kb on - strand, within MPMX19_03223 at 524.082 kb on - strand, within MPMX19_03223 at 524.082 kb on - strand, within MPMX19_03223 at 524.082 kb on - strand, within MPMX19_03223 at 524.082 kb on - strand, within MPMX19_03223 at 524.087 kb on + strand, within MPMX19_03223 at 524.087 kb on + strand, within MPMX19_03223 at 524.088 kb on - strand, within MPMX19_03223 at 524.088 kb on - strand, within MPMX19_03223 at 524.088 kb on - strand, within MPMX19_03223 at 524.088 kb on - strand, within MPMX19_03223 at 524.342 kb on + strand at 524.342 kb on + strand at 524.342 kb on + strand at 524.342 kb on + strand at 524.342 kb on + strand at 524.343 kb on - strand at 524.343 kb on - strand at 524.343 kb on - strand at 524.343 kb on - strand at 524.343 kb on - strand at 524.927 kb on + strand, within MPMX19_03224 at 524.928 kb on - strand, within MPMX19_03224 at 524.928 kb on - strand, within MPMX19_03224 at 524.928 kb on - strand, within MPMX19_03224 at 524.928 kb on - strand, within MPMX19_03224 at 524.928 kb on - strand, within MPMX19_03224 at 525.111 kb on - strand, within MPMX19_03224 at 525.239 kb on + strand, within MPMX19_03224 at 525.239 kb on + strand, within MPMX19_03224 at 525.239 kb on + strand, within MPMX19_03224 at 525.240 kb on - strand, within MPMX19_03224 at 525.240 kb on - strand, within MPMX19_03224 at 525.240 kb on - strand, within MPMX19_03224 at 525.240 kb on - strand, within MPMX19_03224 at 525.240 kb on - strand, within MPMX19_03224 at 525.240 kb on - strand, within MPMX19_03224 at 525.240 kb on - strand, within MPMX19_03224 at 525.244 kb on + strand, within MPMX19_03224 at 525.244 kb on + strand, within MPMX19_03224 at 525.244 kb on + strand, within MPMX19_03224 at 525.244 kb on + strand, within MPMX19_03224 at 525.244 kb on + strand, within MPMX19_03224 at 525.244 kb on + strand, within MPMX19_03224 at 525.244 kb on + strand, within MPMX19_03224 at 525.244 kb on + strand, within MPMX19_03224 at 525.245 kb on - strand, within MPMX19_03224 at 525.245 kb on - strand, within MPMX19_03224 at 525.245 kb on - strand, within MPMX19_03224 at 525.365 kb on + strand, within MPMX19_03224 at 525.365 kb on + strand, within MPMX19_03224 at 525.365 kb on + strand, within MPMX19_03224 at 525.365 kb on + strand, within MPMX19_03224 at 525.365 kb on + strand, within MPMX19_03224 at 525.366 kb on - strand, within MPMX19_03224 at 525.366 kb on - strand, within MPMX19_03224 at 525.366 kb on - strand, within MPMX19_03224 at 525.366 kb on - strand, within MPMX19_03224 at 525.366 kb on - strand, within MPMX19_03224 at 525.398 kb on + strand, within MPMX19_03224 at 525.399 kb on - strand, within MPMX19_03224 at 525.399 kb on - strand, within MPMX19_03224 at 525.399 kb on - strand, within MPMX19_03224
Per-strain Table
Position Strand Gene LocusTag Fraction MGL remove 522,713 + -1.2 522,713 + -0.9 522,713 + -2.7 522,713 + -1.1 522,713 + +0.3 522,713 + -1.7 522,713 + +0.2 522,713 + +1.0 522,713 + -0.4 522,713 + +1.6 522,713 + -1.0 522,713 + +0.4 522,713 + -0.6 522,713 + -0.7 522,714 - -0.0 522,714 - +0.1 522,714 - +0.1 522,714 - -0.6 522,714 - -2.2 522,714 - -0.5 522,714 - -0.3 522,714 - -0.2 522,714 - -0.2 522,714 - +0.2 523,103 + MPMX19_03222 0.58 -1.3 523,104 - MPMX19_03222 0.59 -1.2 523,104 - MPMX19_03222 0.59 +0.4 523,341 + -1.3 523,344 - -1.3 523,442 + -0.3 523,442 + +1.0 523,442 + -1.7 523,442 + -1.2 523,442 + -0.3 523,442 + -0.0 523,442 + -0.2 523,442 + -1.1 523,442 + +0.8 523,442 + -0.8 523,442 + -0.4 523,442 + +1.2 523,442 + -0.4 523,443 - -0.3 523,443 - -1.3 523,443 - -1.2 523,443 - -0.8 523,443 - -0.8 523,443 - -0.7 523,443 - -1.0 523,443 - -0.3 523,443 - +0.7 523,443 - -0.0 523,489 + +0.2 523,489 + -0.3 523,489 + +0.0 523,490 - +0.8 523,490 - -1.3 523,508 + +0.1 523,508 + -0.3 523,508 + -1.1 523,509 - -2.0 523,509 - -0.0 523,509 - -0.4 523,509 - +2.0 523,537 + -0.8 523,538 - -0.5 523,630 + -0.4 523,630 + -0.8 523,630 + -0.5 523,630 + +0.4 523,630 + -2.0 523,631 - +0.6 523,631 - -0.7 523,631 - -0.8 523,631 - -0.1 523,631 - -0.0 523,631 - +0.4 523,631 - +0.4 523,805 + MPMX19_03223 0.22 -1.9 523,805 + MPMX19_03223 0.22 +0.3 523,806 - MPMX19_03223 0.22 -0.1 523,916 + MPMX19_03223 0.36 -0.4 523,916 + MPMX19_03223 0.36 +0.1 523,916 + MPMX19_03223 0.36 -0.2 523,916 + MPMX19_03223 0.36 +0.6 523,916 + MPMX19_03223 0.36 -3.4 523,917 - MPMX19_03223 0.36 +0.1 523,917 - MPMX19_03223 0.36 +0.6 523,917 - MPMX19_03223 0.36 -1.3 523,917 - MPMX19_03223 0.36 +0.1 523,917 - MPMX19_03223 0.36 -2.3 523,973 + MPMX19_03223 0.44 +0.2 523,973 + MPMX19_03223 0.44 +1.1 523,973 + MPMX19_03223 0.44 -1.9 523,973 + MPMX19_03223 0.44 -1.0 523,973 + MPMX19_03223 0.44 -0.8 523,973 + MPMX19_03223 0.44 +0.2 523,973 + MPMX19_03223 0.44 -1.1 523,973 + MPMX19_03223 0.44 -0.7 523,973 + MPMX19_03223 0.44 -1.8 523,973 + MPMX19_03223 0.44 -1.0 523,973 + MPMX19_03223 0.44 -1.3 523,974 - MPMX19_03223 0.44 -0.9 523,974 - MPMX19_03223 0.44 -1.0 523,974 - MPMX19_03223 0.44 -2.2 523,974 - MPMX19_03223 0.44 -0.1 523,974 - MPMX19_03223 0.44 -0.3 523,974 - MPMX19_03223 0.44 -1.0 523,974 - MPMX19_03223 0.44 -0.0 523,974 - MPMX19_03223 0.44 +1.2 524,081 + MPMX19_03223 0.58 -0.2 524,082 - MPMX19_03223 0.58 +0.6 524,082 - MPMX19_03223 0.58 +1.1 524,082 - MPMX19_03223 0.58 -0.4 524,082 - MPMX19_03223 0.58 +0.1 524,082 - MPMX19_03223 0.58 -0.0 524,082 - MPMX19_03223 0.58 +1.1 524,087 + MPMX19_03223 0.58 -1.5 524,087 + MPMX19_03223 0.58 -0.6 524,088 - MPMX19_03223 0.58 -1.0 524,088 - MPMX19_03223 0.58 -2.1 524,088 - MPMX19_03223 0.58 -0.0 524,088 - MPMX19_03223 0.58 -0.4 524,342 + -1.2 524,342 + -1.8 524,342 + -0.9 524,342 + -1.1 524,342 + -0.6 524,343 - +0.6 524,343 - -1.4 524,343 - +1.0 524,343 - -0.1 524,343 - +0.6 524,927 + MPMX19_03224 0.26 +0.2 524,928 - MPMX19_03224 0.26 +0.6 524,928 - MPMX19_03224 0.26 +0.1 524,928 - MPMX19_03224 0.26 -0.8 524,928 - MPMX19_03224 0.26 +0.2 524,928 - MPMX19_03224 0.26 -0.0 525,111 - MPMX19_03224 0.37 -0.6 525,239 + MPMX19_03224 0.44 +1.6 525,239 + MPMX19_03224 0.44 +1.1 525,239 + MPMX19_03224 0.44 -1.5 525,240 - MPMX19_03224 0.44 -0.0 525,240 - MPMX19_03224 0.44 +0.8 525,240 - MPMX19_03224 0.44 +0.6 525,240 - MPMX19_03224 0.44 +0.3 525,240 - MPMX19_03224 0.44 +0.6 525,240 - MPMX19_03224 0.44 -0.3 525,240 - MPMX19_03224 0.44 -0.6 525,244 + MPMX19_03224 0.44 -2.5 525,244 + MPMX19_03224 0.44 -1.1 525,244 + MPMX19_03224 0.44 -0.6 525,244 + MPMX19_03224 0.44 +0.4 525,244 + MPMX19_03224 0.44 -0.8 525,244 + MPMX19_03224 0.44 +0.2 525,244 + MPMX19_03224 0.44 -1.8 525,244 + MPMX19_03224 0.44 -0.2 525,245 - MPMX19_03224 0.44 -0.0 525,245 - MPMX19_03224 0.44 +0.2 525,245 - MPMX19_03224 0.44 -0.6 525,365 + MPMX19_03224 0.51 -0.8 525,365 + MPMX19_03224 0.51 -1.1 525,365 + MPMX19_03224 0.51 -0.9 525,365 + MPMX19_03224 0.51 -1.2 525,365 + MPMX19_03224 0.51 +0.1 525,366 - MPMX19_03224 0.51 +1.2 525,366 - MPMX19_03224 0.51 -1.1 525,366 - MPMX19_03224 0.51 -0.0 525,366 - MPMX19_03224 0.51 -0.9 525,366 - MPMX19_03224 0.51 -1.5 525,398 + MPMX19_03224 0.53 -2.1 525,399 - MPMX19_03224 0.53 -1.1 525,399 - MPMX19_03224 0.53 -0.1 525,399 - MPMX19_03224 0.53 +1.2
Or see this region's nucleotide sequence