Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03129

Experiment: MGL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03127 and MPMX19_03128 are separated by 59 nucleotidesMPMX19_03128 and MPMX19_03129 are separated by 357 nucleotidesMPMX19_03129 and MPMX19_03130 are separated by 95 nucleotides MPMX19_03127: MPMX19_03127 - 2-(5''-triphosphoribosyl)-3'-dephosphocoenzyme-A synthase, at 414,430 to 415,404 _03127 MPMX19_03128: MPMX19_03128 - hypothetical protein, at 415,464 to 416,042 _03128 MPMX19_03129: MPMX19_03129 - Citrate/malate transporter, at 416,400 to 417,761 _03129 MPMX19_03130: MPMX19_03130 - Anaerobic nitric oxide reductase transcription regulator NorR, at 417,857 to 419,284 _03130 Position (kb) 416 417 418Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 415.533 kb on + strand, within MPMX19_03128at 415.533 kb on + strand, within MPMX19_03128at 415.533 kb on + strand, within MPMX19_03128at 415.533 kb on + strand, within MPMX19_03128at 415.533 kb on + strand, within MPMX19_03128at 415.533 kb on + strand, within MPMX19_03128at 415.533 kb on + strand, within MPMX19_03128at 415.533 kb on + strand, within MPMX19_03128at 415.533 kb on + strand, within MPMX19_03128at 415.533 kb on + strand, within MPMX19_03128at 415.534 kb on - strand, within MPMX19_03128at 415.534 kb on - strand, within MPMX19_03128at 415.534 kb on - strand, within MPMX19_03128at 416.013 kb on - strandat 416.122 kb on + strandat 416.123 kb on - strandat 416.149 kb on + strandat 416.150 kb on - strandat 416.194 kb on + strandat 416.724 kb on + strand, within MPMX19_03129at 416.724 kb on + strand, within MPMX19_03129at 416.724 kb on + strand, within MPMX19_03129at 416.724 kb on + strand, within MPMX19_03129at 416.724 kb on + strand, within MPMX19_03129at 416.724 kb on + strand, within MPMX19_03129at 416.724 kb on + strand, within MPMX19_03129at 416.724 kb on + strand, within MPMX19_03129at 416.725 kb on - strand, within MPMX19_03129at 416.725 kb on - strand, within MPMX19_03129at 416.725 kb on - strand, within MPMX19_03129at 416.725 kb on - strand, within MPMX19_03129at 416.725 kb on - strand, within MPMX19_03129at 416.725 kb on - strand, within MPMX19_03129at 416.725 kb on - strand, within MPMX19_03129at 416.725 kb on - strand, within MPMX19_03129at 416.725 kb on - strand, within MPMX19_03129at 416.725 kb on - strand, within MPMX19_03129at 416.725 kb on - strand, within MPMX19_03129at 416.727 kb on + strand, within MPMX19_03129at 416.727 kb on + strand, within MPMX19_03129at 416.727 kb on + strand, within MPMX19_03129at 416.728 kb on - strand, within MPMX19_03129at 416.728 kb on - strand, within MPMX19_03129at 416.728 kb on - strand, within MPMX19_03129at 416.793 kb on + strand, within MPMX19_03129at 416.793 kb on + strand, within MPMX19_03129at 416.793 kb on + strand, within MPMX19_03129at 417.030 kb on + strand, within MPMX19_03129at 417.030 kb on + strand, within MPMX19_03129at 417.279 kb on + strand, within MPMX19_03129at 417.279 kb on + strand, within MPMX19_03129at 417.279 kb on + strand, within MPMX19_03129at 417.279 kb on + strand, within MPMX19_03129at 417.279 kb on + strand, within MPMX19_03129at 417.279 kb on + strand, within MPMX19_03129at 417.280 kb on - strand, within MPMX19_03129at 417.280 kb on - strand, within MPMX19_03129at 417.280 kb on - strand, within MPMX19_03129at 417.408 kb on + strand, within MPMX19_03129at 417.408 kb on + strand, within MPMX19_03129at 417.408 kb on + strand, within MPMX19_03129at 417.409 kb on - strand, within MPMX19_03129at 417.409 kb on - strand, within MPMX19_03129at 417.409 kb on - strand, within MPMX19_03129at 417.435 kb on + strand, within MPMX19_03129at 417.435 kb on + strand, within MPMX19_03129at 417.436 kb on - strand, within MPMX19_03129at 417.582 kb on + strand, within MPMX19_03129at 417.582 kb on + strand, within MPMX19_03129at 417.583 kb on - strand, within MPMX19_03129at 417.583 kb on - strand, within MPMX19_03129at 417.583 kb on - strand, within MPMX19_03129at 417.583 kb on - strand, within MPMX19_03129at 417.583 kb on - strand, within MPMX19_03129at 417.583 kb on - strand, within MPMX19_03129at 417.903 kb on + strandat 417.903 kb on + strandat 417.914 kb on - strandat 418.119 kb on + strand, within MPMX19_03130at 418.119 kb on + strand, within MPMX19_03130at 418.119 kb on + strand, within MPMX19_03130at 418.119 kb on + strand, within MPMX19_03130at 418.119 kb on + strand, within MPMX19_03130at 418.119 kb on + strand, within MPMX19_03130at 418.119 kb on + strand, within MPMX19_03130at 418.119 kb on + strand, within MPMX19_03130at 418.119 kb on + strand, within MPMX19_03130at 418.119 kb on + strand, within MPMX19_03130at 418.119 kb on + strand, within MPMX19_03130at 418.119 kb on + strand, within MPMX19_03130at 418.119 kb on + strand, within MPMX19_03130at 418.119 kb on + strand, within MPMX19_03130at 418.119 kb on + strand, within MPMX19_03130at 418.120 kb on - strand, within MPMX19_03130at 418.120 kb on - strand, within MPMX19_03130at 418.120 kb on - strand, within MPMX19_03130at 418.120 kb on - strand, within MPMX19_03130at 418.120 kb on - strand, within MPMX19_03130at 418.120 kb on - strand, within MPMX19_03130at 418.120 kb on - strand, within MPMX19_03130at 418.120 kb on - strand, within MPMX19_03130at 418.120 kb on - strand, within MPMX19_03130at 418.120 kb on - strand, within MPMX19_03130at 418.120 kb on - strand, within MPMX19_03130at 418.120 kb on - strand, within MPMX19_03130at 418.120 kb on - strand, within MPMX19_03130at 418.326 kb on + strand, within MPMX19_03130at 418.329 kb on + strand, within MPMX19_03130at 418.329 kb on + strand, within MPMX19_03130at 418.329 kb on + strand, within MPMX19_03130at 418.329 kb on + strand, within MPMX19_03130at 418.329 kb on + strand, within MPMX19_03130at 418.330 kb on - strand, within MPMX19_03130at 418.330 kb on - strand, within MPMX19_03130at 418.330 kb on - strand, within MPMX19_03130at 418.330 kb on - strand, within MPMX19_03130at 418.330 kb on - strand, within MPMX19_03130at 418.330 kb on - strand, within MPMX19_03130at 418.576 kb on - strand, within MPMX19_03130at 418.576 kb on - strand, within MPMX19_03130at 418.576 kb on - strand, within MPMX19_03130at 418.576 kb on - strand, within MPMX19_03130at 418.576 kb on - strand, within MPMX19_03130at 418.576 kb on - strand, within MPMX19_03130at 418.576 kb on - strand, within MPMX19_03130at 418.576 kb on - strand, within MPMX19_03130at 418.576 kb on - strand, within MPMX19_03130

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Per-strain Table

Position Strand Gene LocusTag Fraction MGL
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415,533 + MPMX19_03128 0.12 +0.2
415,533 + MPMX19_03128 0.12 -1.4
415,533 + MPMX19_03128 0.12 -0.9
415,533 + MPMX19_03128 0.12 -0.4
415,533 + MPMX19_03128 0.12 -1.9
415,533 + MPMX19_03128 0.12 +0.2
415,533 + MPMX19_03128 0.12 -1.3
415,533 + MPMX19_03128 0.12 +1.0
415,533 + MPMX19_03128 0.12 +0.2
415,533 + MPMX19_03128 0.12 +0.8
415,534 - MPMX19_03128 0.12 -0.4
415,534 - MPMX19_03128 0.12 -0.8
415,534 - MPMX19_03128 0.12 -0.8
416,013 - -0.6
416,122 + -1.9
416,123 - -0.4
416,149 + +0.1
416,150 - +1.2
416,194 + -0.0
416,724 + MPMX19_03129 0.24 +0.3
416,724 + MPMX19_03129 0.24 +0.6
416,724 + MPMX19_03129 0.24 -1.2
416,724 + MPMX19_03129 0.24 +1.3
416,724 + MPMX19_03129 0.24 +0.6
416,724 + MPMX19_03129 0.24 -0.6
416,724 + MPMX19_03129 0.24 -0.5
416,724 + MPMX19_03129 0.24 -0.4
416,725 - MPMX19_03129 0.24 -0.0
416,725 - MPMX19_03129 0.24 +1.0
416,725 - MPMX19_03129 0.24 -0.8
416,725 - MPMX19_03129 0.24 +1.8
416,725 - MPMX19_03129 0.24 -0.4
416,725 - MPMX19_03129 0.24 +0.8
416,725 - MPMX19_03129 0.24 -0.4
416,725 - MPMX19_03129 0.24 +0.2
416,725 - MPMX19_03129 0.24 -0.2
416,725 - MPMX19_03129 0.24 -0.6
416,725 - MPMX19_03129 0.24 +1.0
416,727 + MPMX19_03129 0.24 -0.7
416,727 + MPMX19_03129 0.24 -0.2
416,727 + MPMX19_03129 0.24 +0.2
416,728 - MPMX19_03129 0.24 -1.2
416,728 - MPMX19_03129 0.24 +0.5
416,728 - MPMX19_03129 0.24 -0.6
416,793 + MPMX19_03129 0.29 -0.6
416,793 + MPMX19_03129 0.29 +0.6
416,793 + MPMX19_03129 0.29 +0.2
417,030 + MPMX19_03129 0.46 +1.6
417,030 + MPMX19_03129 0.46 -0.2
417,279 + MPMX19_03129 0.65 -0.4
417,279 + MPMX19_03129 0.65 -1.8
417,279 + MPMX19_03129 0.65 -0.0
417,279 + MPMX19_03129 0.65 -0.5
417,279 + MPMX19_03129 0.65 -0.1
417,279 + MPMX19_03129 0.65 -0.0
417,280 - MPMX19_03129 0.65 +1.0
417,280 - MPMX19_03129 0.65 -0.8
417,280 - MPMX19_03129 0.65 -0.1
417,408 + MPMX19_03129 0.74 -0.8
417,408 + MPMX19_03129 0.74 +0.2
417,408 + MPMX19_03129 0.74 -0.1
417,409 - MPMX19_03129 0.74 -0.9
417,409 - MPMX19_03129 0.74 -0.7
417,409 - MPMX19_03129 0.74 -0.2
417,435 + MPMX19_03129 0.76 -1.2
417,435 + MPMX19_03129 0.76 +1.0
417,436 - MPMX19_03129 0.76 +0.2
417,582 + MPMX19_03129 0.87 +0.2
417,582 + MPMX19_03129 0.87 -0.2
417,583 - MPMX19_03129 0.87 +0.8
417,583 - MPMX19_03129 0.87 +0.1
417,583 - MPMX19_03129 0.87 -0.4
417,583 - MPMX19_03129 0.87 -0.2
417,583 - MPMX19_03129 0.87 -0.6
417,583 - MPMX19_03129 0.87 +0.1
417,903 + +0.2
417,903 + -1.6
417,914 - -0.4
418,119 + MPMX19_03130 0.18 -0.6
418,119 + MPMX19_03130 0.18 -1.0
418,119 + MPMX19_03130 0.18 -0.9
418,119 + MPMX19_03130 0.18 -0.0
418,119 + MPMX19_03130 0.18 +0.1
418,119 + MPMX19_03130 0.18 -1.0
418,119 + MPMX19_03130 0.18 -1.3
418,119 + MPMX19_03130 0.18 +0.6
418,119 + MPMX19_03130 0.18 -1.0
418,119 + MPMX19_03130 0.18 -0.0
418,119 + MPMX19_03130 0.18 -0.4
418,119 + MPMX19_03130 0.18 -0.6
418,119 + MPMX19_03130 0.18 -2.1
418,119 + MPMX19_03130 0.18 +0.6
418,119 + MPMX19_03130 0.18 -0.4
418,120 - MPMX19_03130 0.18 -1.0
418,120 - MPMX19_03130 0.18 -1.8
418,120 - MPMX19_03130 0.18 -0.4
418,120 - MPMX19_03130 0.18 -0.4
418,120 - MPMX19_03130 0.18 -1.1
418,120 - MPMX19_03130 0.18 -2.0
418,120 - MPMX19_03130 0.18 -1.0
418,120 - MPMX19_03130 0.18 +0.1
418,120 - MPMX19_03130 0.18 +0.4
418,120 - MPMX19_03130 0.18 -0.6
418,120 - MPMX19_03130 0.18 -2.1
418,120 - MPMX19_03130 0.18 -1.1
418,120 - MPMX19_03130 0.18 -1.5
418,326 + MPMX19_03130 0.33 -0.6
418,329 + MPMX19_03130 0.33 -0.0
418,329 + MPMX19_03130 0.33 -1.6
418,329 + MPMX19_03130 0.33 +1.0
418,329 + MPMX19_03130 0.33 -1.4
418,329 + MPMX19_03130 0.33 +0.2
418,330 - MPMX19_03130 0.33 +1.0
418,330 - MPMX19_03130 0.33 -1.4
418,330 - MPMX19_03130 0.33 -0.6
418,330 - MPMX19_03130 0.33 -0.8
418,330 - MPMX19_03130 0.33 +1.2
418,330 - MPMX19_03130 0.33 -0.6
418,576 - MPMX19_03130 0.50 -0.8
418,576 - MPMX19_03130 0.50 -0.6
418,576 - MPMX19_03130 0.50 -2.9
418,576 - MPMX19_03130 0.50 -1.3
418,576 - MPMX19_03130 0.50 +0.4
418,576 - MPMX19_03130 0.50 +0.2
418,576 - MPMX19_03130 0.50 -1.1
418,576 - MPMX19_03130 0.50 -0.0
418,576 - MPMX19_03130 0.50 +0.1

Or see this region's nucleotide sequence