Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_02846

Experiment: MGL

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX19_02845 and MPMX19_02846 are separated by 459 nucleotidesMPMX19_02846 and MPMX19_02847 are separated by 11 nucleotides MPMX19_02845: MPMX19_02845 - Enolase, at 86,519 to 87,796 _02845 MPMX19_02846: MPMX19_02846 - hypothetical protein, at 88,256 to 89,698 _02846 MPMX19_02847: MPMX19_02847 - Acetate kinase, at 89,710 to 90,936 _02847 Position (kb) 88 89 90Strain fitness (log2 ratio) -3 -2 -1 0 1at 87.278 kb on + strand, within MPMX19_02845at 87.278 kb on + strand, within MPMX19_02845at 87.574 kb on + strand, within MPMX19_02845at 87.720 kb on - strandat 87.720 kb on - strandat 87.720 kb on - strandat 87.720 kb on - strandat 87.720 kb on - strandat 87.720 kb on - strandat 87.720 kb on - strandat 87.720 kb on - strandat 87.720 kb on - strandat 87.720 kb on - strandat 88.033 kb on + strandat 88.033 kb on + strandat 88.033 kb on + strandat 88.033 kb on + strandat 88.034 kb on - strandat 88.034 kb on - strandat 88.514 kb on + strand, within MPMX19_02846at 88.514 kb on + strand, within MPMX19_02846at 88.514 kb on + strand, within MPMX19_02846at 88.514 kb on + strand, within MPMX19_02846at 88.514 kb on + strand, within MPMX19_02846at 88.514 kb on + strand, within MPMX19_02846at 88.514 kb on + strand, within MPMX19_02846at 88.514 kb on + strand, within MPMX19_02846at 88.514 kb on + strand, within MPMX19_02846at 88.514 kb on + strand, within MPMX19_02846at 88.514 kb on + strand, within MPMX19_02846at 88.514 kb on + strand, within MPMX19_02846at 88.514 kb on + strand, within MPMX19_02846at 88.514 kb on + strand, within MPMX19_02846at 88.514 kb on + strand, within MPMX19_02846at 88.515 kb on - strand, within MPMX19_02846at 88.515 kb on - strand, within MPMX19_02846at 88.515 kb on - strand, within MPMX19_02846at 88.515 kb on - strand, within MPMX19_02846at 88.515 kb on - strand, within MPMX19_02846at 88.515 kb on - strand, within MPMX19_02846at 88.515 kb on - strand, within MPMX19_02846at 88.515 kb on - strand, within MPMX19_02846at 88.515 kb on - strand, within MPMX19_02846at 88.538 kb on + strand, within MPMX19_02846at 88.539 kb on - strand, within MPMX19_02846at 88.539 kb on - strand, within MPMX19_02846at 88.539 kb on - strand, within MPMX19_02846at 88.539 kb on - strand, within MPMX19_02846at 88.832 kb on + strand, within MPMX19_02846at 88.964 kb on + strand, within MPMX19_02846at 89.125 kb on + strand, within MPMX19_02846at 89.159 kb on + strand, within MPMX19_02846at 89.159 kb on + strand, within MPMX19_02846at 89.160 kb on - strand, within MPMX19_02846at 89.160 kb on - strand, within MPMX19_02846at 89.201 kb on + strand, within MPMX19_02846at 89.201 kb on + strand, within MPMX19_02846at 89.201 kb on + strand, within MPMX19_02846at 89.201 kb on + strand, within MPMX19_02846at 89.201 kb on + strand, within MPMX19_02846at 89.201 kb on + strand, within MPMX19_02846at 89.201 kb on + strand, within MPMX19_02846at 89.202 kb on - strand, within MPMX19_02846at 89.202 kb on - strand, within MPMX19_02846at 89.696 kb on + strandat 89.889 kb on + strand, within MPMX19_02847at 89.890 kb on - strand, within MPMX19_02847at 89.890 kb on - strand, within MPMX19_02847at 89.890 kb on - strand, within MPMX19_02847at 90.151 kb on + strand, within MPMX19_02847at 90.266 kb on - strand, within MPMX19_02847at 90.286 kb on + strand, within MPMX19_02847at 90.286 kb on + strand, within MPMX19_02847at 90.287 kb on - strand, within MPMX19_02847at 90.287 kb on - strand, within MPMX19_02847at 90.292 kb on + strand, within MPMX19_02847at 90.292 kb on + strand, within MPMX19_02847at 90.292 kb on + strand, within MPMX19_02847at 90.292 kb on + strand, within MPMX19_02847at 90.292 kb on + strand, within MPMX19_02847at 90.292 kb on + strand, within MPMX19_02847at 90.292 kb on + strand, within MPMX19_02847at 90.293 kb on - strand, within MPMX19_02847at 90.293 kb on - strand, within MPMX19_02847at 90.293 kb on - strand, within MPMX19_02847at 90.487 kb on + strand, within MPMX19_02847at 90.487 kb on + strand, within MPMX19_02847at 90.488 kb on - strand, within MPMX19_02847at 90.488 kb on - strand, within MPMX19_02847at 90.488 kb on - strand, within MPMX19_02847at 90.488 kb on - strand, within MPMX19_02847at 90.488 kb on - strand, within MPMX19_02847at 90.488 kb on - strand, within MPMX19_02847at 90.488 kb on - strand, within MPMX19_02847at 90.488 kb on - strand, within MPMX19_02847at 90.488 kb on - strand, within MPMX19_02847at 90.488 kb on - strand, within MPMX19_02847at 90.509 kb on - strand, within MPMX19_02847at 90.509 kb on - strand, within MPMX19_02847at 90.538 kb on + strand, within MPMX19_02847at 90.538 kb on + strand, within MPMX19_02847at 90.538 kb on + strand, within MPMX19_02847at 90.539 kb on - strand, within MPMX19_02847

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MGL
remove
87,278 + MPMX19_02845 0.59 -0.2
87,278 + MPMX19_02845 0.59 -0.6
87,574 + MPMX19_02845 0.83 +0.7
87,720 - +0.6
87,720 - +0.8
87,720 - -1.5
87,720 - -1.0
87,720 - -0.3
87,720 - -0.4
87,720 - -0.1
87,720 - -3.3
87,720 - -2.5
87,720 - +0.8
88,033 + +0.1
88,033 + -0.7
88,033 + -0.2
88,033 + +0.3
88,034 - -0.0
88,034 - -1.3
88,514 + MPMX19_02846 0.18 -1.2
88,514 + MPMX19_02846 0.18 +0.6
88,514 + MPMX19_02846 0.18 -0.5
88,514 + MPMX19_02846 0.18 +0.6
88,514 + MPMX19_02846 0.18 -1.4
88,514 + MPMX19_02846 0.18 -0.9
88,514 + MPMX19_02846 0.18 -1.8
88,514 + MPMX19_02846 0.18 -1.5
88,514 + MPMX19_02846 0.18 +0.4
88,514 + MPMX19_02846 0.18 -0.7
88,514 + MPMX19_02846 0.18 -0.0
88,514 + MPMX19_02846 0.18 +1.0
88,514 + MPMX19_02846 0.18 -0.0
88,514 + MPMX19_02846 0.18 +0.6
88,514 + MPMX19_02846 0.18 -0.1
88,515 - MPMX19_02846 0.18 +0.5
88,515 - MPMX19_02846 0.18 -0.0
88,515 - MPMX19_02846 0.18 -2.0
88,515 - MPMX19_02846 0.18 -0.4
88,515 - MPMX19_02846 0.18 -0.0
88,515 - MPMX19_02846 0.18 +0.1
88,515 - MPMX19_02846 0.18 +0.3
88,515 - MPMX19_02846 0.18 -0.5
88,515 - MPMX19_02846 0.18 -1.1
88,538 + MPMX19_02846 0.20 +0.4
88,539 - MPMX19_02846 0.20 -0.7
88,539 - MPMX19_02846 0.20 -0.4
88,539 - MPMX19_02846 0.20 -0.6
88,539 - MPMX19_02846 0.20 +1.2
88,832 + MPMX19_02846 0.40 -0.2
88,964 + MPMX19_02846 0.49 -2.2
89,125 + MPMX19_02846 0.60 -1.0
89,159 + MPMX19_02846 0.63 +0.6
89,159 + MPMX19_02846 0.63 +1.0
89,160 - MPMX19_02846 0.63 -2.0
89,160 - MPMX19_02846 0.63 -1.5
89,201 + MPMX19_02846 0.65 -0.4
89,201 + MPMX19_02846 0.65 +0.9
89,201 + MPMX19_02846 0.65 -0.4
89,201 + MPMX19_02846 0.65 -0.2
89,201 + MPMX19_02846 0.65 -0.5
89,201 + MPMX19_02846 0.65 +0.6
89,201 + MPMX19_02846 0.65 +1.6
89,202 - MPMX19_02846 0.66 +0.8
89,202 - MPMX19_02846 0.66 -1.5
89,696 + -1.1
89,889 + MPMX19_02847 0.15 -0.8
89,890 - MPMX19_02847 0.15 -0.6
89,890 - MPMX19_02847 0.15 -0.0
89,890 - MPMX19_02847 0.15 -0.6
90,151 + MPMX19_02847 0.36 -0.2
90,266 - MPMX19_02847 0.45 -0.6
90,286 + MPMX19_02847 0.47 +0.3
90,286 + MPMX19_02847 0.47 -1.0
90,287 - MPMX19_02847 0.47 +0.6
90,287 - MPMX19_02847 0.47 -0.7
90,292 + MPMX19_02847 0.47 -0.2
90,292 + MPMX19_02847 0.47 -0.5
90,292 + MPMX19_02847 0.47 -0.5
90,292 + MPMX19_02847 0.47 -0.3
90,292 + MPMX19_02847 0.47 -1.3
90,292 + MPMX19_02847 0.47 +1.1
90,292 + MPMX19_02847 0.47 -0.7
90,293 - MPMX19_02847 0.48 +0.3
90,293 - MPMX19_02847 0.48 +0.1
90,293 - MPMX19_02847 0.48 -1.2
90,487 + MPMX19_02847 0.63 -0.9
90,487 + MPMX19_02847 0.63 -1.4
90,488 - MPMX19_02847 0.63 -0.1
90,488 - MPMX19_02847 0.63 +0.8
90,488 - MPMX19_02847 0.63 -0.9
90,488 - MPMX19_02847 0.63 -0.6
90,488 - MPMX19_02847 0.63 +1.0
90,488 - MPMX19_02847 0.63 -0.9
90,488 - MPMX19_02847 0.63 -0.6
90,488 - MPMX19_02847 0.63 -2.7
90,488 - MPMX19_02847 0.63 -1.2
90,488 - MPMX19_02847 0.63 -1.9
90,509 - MPMX19_02847 0.65 -0.2
90,509 - MPMX19_02847 0.65 -0.3
90,538 + MPMX19_02847 0.67 -0.7
90,538 + MPMX19_02847 0.67 -1.7
90,538 + MPMX19_02847 0.67 -1.8
90,539 - MPMX19_02847 0.68 -1.3

Or see this region's nucleotide sequence