Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_02716

Experiment: MGL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_02715 and MPMX19_02716 are separated by 90 nucleotidesMPMX19_02716 and MPMX19_02717 are separated by 64 nucleotides MPMX19_02715: MPMX19_02715 - DNA gyrase subunit B, at 2,847,706 to 2,850,189 _02715 MPMX19_02716: MPMX19_02716 - DNA replication and repair protein RecF, at 2,850,280 to 2,851,464 _02716 MPMX19_02717: MPMX19_02717 - Beta sliding clamp, at 2,851,529 to 2,852,659 _02717 Position (kb) 2850 2851 2852Strain fitness (log2 ratio) -1 0 1at 2850.230 kb on - strandat 2850.230 kb on - strandat 2850.921 kb on - strand, within MPMX19_02716at 2851.373 kb on + strandat 2851.374 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MGL
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2,850,230 - -1.0
2,850,230 - +0.0
2,850,921 - MPMX19_02716 0.54 -0.2
2,851,373 + -0.9
2,851,374 - +0.6

Or see this region's nucleotide sequence