Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_01668

Experiment: MGL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_01666 and MPMX19_01667 overlap by 4 nucleotidesMPMX19_01667 and MPMX19_01668 are separated by 7 nucleotides MPMX19_01666: MPMX19_01666 - ABC transporter ATP-binding protein uup, at 1,751,685 to 1,753,517 _01666 MPMX19_01667: MPMX19_01667 - putative amino-acid metabolite efflux pump, at 1,753,514 to 1,754,392 _01667 MPMX19_01668: MPMX19_01668 - N-acetylmuramoyl-L-alanine amidase AmiD, at 1,754,400 to 1,755,092 _01668 Position (kb) 1754 1755 1756Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1754.067 kb on + strand, within MPMX19_01667at 1754.067 kb on + strand, within MPMX19_01667at 1754.068 kb on - strand, within MPMX19_01667at 1754.068 kb on - strand, within MPMX19_01667at 1754.068 kb on - strand, within MPMX19_01667at 1754.068 kb on - strand, within MPMX19_01667at 1754.068 kb on - strand, within MPMX19_01667at 1754.141 kb on + strand, within MPMX19_01667at 1754.141 kb on + strand, within MPMX19_01667at 1754.141 kb on + strand, within MPMX19_01667at 1754.141 kb on + strand, within MPMX19_01667at 1754.141 kb on + strand, within MPMX19_01667at 1754.141 kb on + strand, within MPMX19_01667at 1754.141 kb on + strand, within MPMX19_01667at 1754.141 kb on + strand, within MPMX19_01667at 1754.141 kb on + strand, within MPMX19_01667at 1754.141 kb on + strand, within MPMX19_01667at 1754.141 kb on + strand, within MPMX19_01667at 1754.141 kb on + strand, within MPMX19_01667at 1754.141 kb on + strand, within MPMX19_01667at 1754.141 kb on + strand, within MPMX19_01667at 1754.141 kb on + strand, within MPMX19_01667at 1754.142 kb on - strand, within MPMX19_01667at 1754.142 kb on - strand, within MPMX19_01667at 1754.142 kb on - strand, within MPMX19_01667at 1754.142 kb on - strand, within MPMX19_01667at 1754.142 kb on - strand, within MPMX19_01667at 1754.142 kb on - strand, within MPMX19_01667at 1754.142 kb on - strand, within MPMX19_01667at 1754.142 kb on - strand, within MPMX19_01667at 1754.142 kb on - strand, within MPMX19_01667at 1754.142 kb on - strand, within MPMX19_01667at 1754.142 kb on - strand, within MPMX19_01667at 1754.142 kb on - strand, within MPMX19_01667at 1754.142 kb on - strand, within MPMX19_01667at 1754.142 kb on - strand, within MPMX19_01667at 1754.142 kb on - strand, within MPMX19_01667at 1754.142 kb on - strand, within MPMX19_01667at 1754.142 kb on - strand, within MPMX19_01667at 1754.142 kb on - strand, within MPMX19_01667at 1754.171 kb on + strand, within MPMX19_01667at 1754.171 kb on + strand, within MPMX19_01667at 1754.171 kb on + strand, within MPMX19_01667at 1754.171 kb on + strand, within MPMX19_01667at 1754.172 kb on - strand, within MPMX19_01667at 1754.172 kb on - strand, within MPMX19_01667at 1754.172 kb on - strand, within MPMX19_01667at 1754.201 kb on + strand, within MPMX19_01667at 1754.201 kb on + strand, within MPMX19_01667at 1754.201 kb on + strand, within MPMX19_01667at 1754.201 kb on + strand, within MPMX19_01667at 1754.202 kb on - strand, within MPMX19_01667at 1754.202 kb on - strand, within MPMX19_01667at 1754.202 kb on - strand, within MPMX19_01667at 1754.202 kb on - strand, within MPMX19_01667at 1754.225 kb on + strand, within MPMX19_01667at 1754.225 kb on + strand, within MPMX19_01667at 1754.225 kb on + strand, within MPMX19_01667at 1754.225 kb on + strand, within MPMX19_01667at 1754.225 kb on + strand, within MPMX19_01667at 1754.225 kb on + strand, within MPMX19_01667at 1754.225 kb on + strand, within MPMX19_01667at 1754.225 kb on + strand, within MPMX19_01667at 1754.225 kb on + strand, within MPMX19_01667at 1754.225 kb on + strand, within MPMX19_01667at 1754.225 kb on + strand, within MPMX19_01667at 1754.226 kb on - strand, within MPMX19_01667at 1754.226 kb on - strand, within MPMX19_01667at 1754.226 kb on - strand, within MPMX19_01667at 1754.226 kb on - strand, within MPMX19_01667at 1754.226 kb on - strand, within MPMX19_01667at 1754.226 kb on - strand, within MPMX19_01667at 1754.226 kb on - strand, within MPMX19_01667at 1754.226 kb on - strand, within MPMX19_01667at 1754.226 kb on - strand, within MPMX19_01667at 1754.226 kb on - strand, within MPMX19_01667at 1754.226 kb on - strand, within MPMX19_01667at 1754.487 kb on + strand, within MPMX19_01668at 1754.488 kb on - strand, within MPMX19_01668at 1754.559 kb on + strand, within MPMX19_01668at 1754.586 kb on + strand, within MPMX19_01668at 1754.959 kb on - strand, within MPMX19_01668at 1754.964 kb on + strand, within MPMX19_01668at 1755.033 kb on - strandat 1755.832 kb on + strandat 1755.832 kb on + strandat 1755.833 kb on - strandat 1755.833 kb on - strandat 1755.911 kb on + strandat 1755.911 kb on + strandat 1755.911 kb on + strandat 1755.911 kb on + strandat 1755.912 kb on - strandat 1755.912 kb on - strandat 1755.912 kb on - strandat 1755.912 kb on - strandat 1755.956 kb on + strandat 1755.956 kb on + strandat 1755.956 kb on + strandat 1755.956 kb on + strandat 1755.956 kb on + strandat 1755.956 kb on + strandat 1755.957 kb on - strandat 1755.957 kb on - strandat 1756.011 kb on + strandat 1756.038 kb on + strandat 1756.038 kb on + strandat 1756.062 kb on + strandat 1756.079 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MGL
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1,754,067 + MPMX19_01667 0.63 -0.3
1,754,067 + MPMX19_01667 0.63 -0.7
1,754,068 - MPMX19_01667 0.63 -0.3
1,754,068 - MPMX19_01667 0.63 -0.5
1,754,068 - MPMX19_01667 0.63 +0.0
1,754,068 - MPMX19_01667 0.63 +1.2
1,754,068 - MPMX19_01667 0.63 -0.3
1,754,141 + MPMX19_01667 0.71 -1.2
1,754,141 + MPMX19_01667 0.71 -0.9
1,754,141 + MPMX19_01667 0.71 -2.8
1,754,141 + MPMX19_01667 0.71 -2.2
1,754,141 + MPMX19_01667 0.71 -0.5
1,754,141 + MPMX19_01667 0.71 +0.0
1,754,141 + MPMX19_01667 0.71 +0.2
1,754,141 + MPMX19_01667 0.71 -0.1
1,754,141 + MPMX19_01667 0.71 -2.4
1,754,141 + MPMX19_01667 0.71 -0.1
1,754,141 + MPMX19_01667 0.71 -0.8
1,754,141 + MPMX19_01667 0.71 -0.1
1,754,141 + MPMX19_01667 0.71 -1.6
1,754,141 + MPMX19_01667 0.71 +0.4
1,754,141 + MPMX19_01667 0.71 -0.1
1,754,142 - MPMX19_01667 0.71 +0.2
1,754,142 - MPMX19_01667 0.71 +0.8
1,754,142 - MPMX19_01667 0.71 -0.7
1,754,142 - MPMX19_01667 0.71 -0.6
1,754,142 - MPMX19_01667 0.71 -0.7
1,754,142 - MPMX19_01667 0.71 +0.3
1,754,142 - MPMX19_01667 0.71 +0.9
1,754,142 - MPMX19_01667 0.71 +0.5
1,754,142 - MPMX19_01667 0.71 -0.9
1,754,142 - MPMX19_01667 0.71 -0.9
1,754,142 - MPMX19_01667 0.71 +1.9
1,754,142 - MPMX19_01667 0.71 +0.3
1,754,142 - MPMX19_01667 0.71 +0.9
1,754,142 - MPMX19_01667 0.71 +0.3
1,754,142 - MPMX19_01667 0.71 -0.7
1,754,142 - MPMX19_01667 0.71 +0.5
1,754,142 - MPMX19_01667 0.71 -2.2
1,754,142 - MPMX19_01667 0.71 -0.3
1,754,171 + MPMX19_01667 0.75 +0.2
1,754,171 + MPMX19_01667 0.75 +0.2
1,754,171 + MPMX19_01667 0.75 +0.2
1,754,171 + MPMX19_01667 0.75 -2.1
1,754,172 - MPMX19_01667 0.75 +0.4
1,754,172 - MPMX19_01667 0.75 -1.3
1,754,172 - MPMX19_01667 0.75 +0.3
1,754,201 + MPMX19_01667 0.78 -1.8
1,754,201 + MPMX19_01667 0.78 +0.3
1,754,201 + MPMX19_01667 0.78 -1.2
1,754,201 + MPMX19_01667 0.78 -0.1
1,754,202 - MPMX19_01667 0.78 -0.5
1,754,202 - MPMX19_01667 0.78 +0.8
1,754,202 - MPMX19_01667 0.78 +0.5
1,754,202 - MPMX19_01667 0.78 -0.1
1,754,225 + MPMX19_01667 0.81 -0.6
1,754,225 + MPMX19_01667 0.81 -1.0
1,754,225 + MPMX19_01667 0.81 +0.6
1,754,225 + MPMX19_01667 0.81 -0.3
1,754,225 + MPMX19_01667 0.81 -0.6
1,754,225 + MPMX19_01667 0.81 -0.5
1,754,225 + MPMX19_01667 0.81 +0.2
1,754,225 + MPMX19_01667 0.81 -1.3
1,754,225 + MPMX19_01667 0.81 -1.1
1,754,225 + MPMX19_01667 0.81 -0.1
1,754,225 + MPMX19_01667 0.81 -0.1
1,754,226 - MPMX19_01667 0.81 -0.1
1,754,226 - MPMX19_01667 0.81 +0.8
1,754,226 - MPMX19_01667 0.81 -0.2
1,754,226 - MPMX19_01667 0.81 +0.6
1,754,226 - MPMX19_01667 0.81 -0.5
1,754,226 - MPMX19_01667 0.81 -0.6
1,754,226 - MPMX19_01667 0.81 -0.1
1,754,226 - MPMX19_01667 0.81 +0.0
1,754,226 - MPMX19_01667 0.81 -1.4
1,754,226 - MPMX19_01667 0.81 -2.9
1,754,226 - MPMX19_01667 0.81 -1.7
1,754,487 + MPMX19_01668 0.13 -0.1
1,754,488 - MPMX19_01668 0.13 +0.5
1,754,559 + MPMX19_01668 0.23 -0.1
1,754,586 + MPMX19_01668 0.27 +1.9
1,754,959 - MPMX19_01668 0.81 -0.1
1,754,964 + MPMX19_01668 0.81 -0.5
1,755,033 - +0.2
1,755,832 + -1.0
1,755,832 + -0.4
1,755,833 - -0.1
1,755,833 - +0.2
1,755,911 + +1.2
1,755,911 + -1.0
1,755,911 + +0.8
1,755,911 + -0.4
1,755,912 - -0.5
1,755,912 - -1.3
1,755,912 - +0.5
1,755,912 - -1.0
1,755,956 + -0.7
1,755,956 + -0.7
1,755,956 + -0.5
1,755,956 + -0.5
1,755,956 + -1.3
1,755,956 + -0.4
1,755,957 - +0.9
1,755,957 - +0.2
1,756,011 + -0.1
1,756,038 + -2.2
1,756,038 + -0.4
1,756,062 + -0.7
1,756,079 - -1.2

Or see this region's nucleotide sequence