Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_01659

Experiment: MGL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_01658 and MPMX19_01659 are separated by 168 nucleotidesMPMX19_01659 and MPMX19_01660 are separated by 114 nucleotides MPMX19_01658: MPMX19_01658 - tRNA-specific 2-thiouridylase MnmA, at 1,740,076 to 1,741,263 _01658 MPMX19_01659: MPMX19_01659 - tRNA-Met, at 1,741,432 to 1,741,506 _01659 MPMX19_01660: MPMX19_01660 - Response regulator PleD, at 1,741,621 to 1,742,535 _01660 Position (kb) 1741 1742Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1741.215 kb on - strandat 1741.215 kb on - strandat 1741.274 kb on + strandat 1741.275 kb on - strandat 1741.275 kb on - strandat 1741.275 kb on - strandat 1741.275 kb on - strandat 1741.275 kb on - strandat 1741.309 kb on + strandat 1741.510 kb on + strandat 1741.510 kb on + strandat 1741.510 kb on + strandat 1741.510 kb on + strandat 1741.623 kb on - strandat 1741.623 kb on - strandat 1741.698 kb on - strandat 1741.997 kb on + strand, within MPMX19_01660at 1741.997 kb on + strand, within MPMX19_01660at 1741.997 kb on + strand, within MPMX19_01660at 1741.997 kb on + strand, within MPMX19_01660at 1741.997 kb on + strand, within MPMX19_01660at 1741.997 kb on + strand, within MPMX19_01660at 1741.997 kb on + strand, within MPMX19_01660at 1741.997 kb on + strand, within MPMX19_01660at 1741.997 kb on + strand, within MPMX19_01660at 1741.997 kb on + strand, within MPMX19_01660at 1741.997 kb on + strand, within MPMX19_01660at 1741.997 kb on + strand, within MPMX19_01660at 1741.997 kb on + strand, within MPMX19_01660at 1741.997 kb on + strand, within MPMX19_01660at 1741.997 kb on + strand, within MPMX19_01660at 1741.997 kb on + strand, within MPMX19_01660at 1741.997 kb on + strand, within MPMX19_01660at 1741.997 kb on + strand, within MPMX19_01660at 1741.997 kb on + strand, within MPMX19_01660at 1741.997 kb on + strand, within MPMX19_01660at 1741.997 kb on + strand, within MPMX19_01660at 1741.997 kb on + strand, within MPMX19_01660at 1741.997 kb on + strand, within MPMX19_01660at 1741.997 kb on + strand, within MPMX19_01660at 1741.997 kb on + strand, within MPMX19_01660at 1741.997 kb on + strand, within MPMX19_01660at 1741.997 kb on + strand, within MPMX19_01660at 1741.998 kb on - strand, within MPMX19_01660at 1741.998 kb on - strand, within MPMX19_01660at 1741.998 kb on - strand, within MPMX19_01660at 1741.998 kb on - strand, within MPMX19_01660at 1741.998 kb on - strand, within MPMX19_01660at 1741.998 kb on - strand, within MPMX19_01660at 1741.998 kb on - strand, within MPMX19_01660at 1741.998 kb on - strand, within MPMX19_01660at 1741.998 kb on - strand, within MPMX19_01660at 1741.998 kb on - strand, within MPMX19_01660at 1741.998 kb on - strand, within MPMX19_01660at 1741.998 kb on - strand, within MPMX19_01660at 1741.998 kb on - strand, within MPMX19_01660at 1741.998 kb on - strand, within MPMX19_01660at 1741.998 kb on - strand, within MPMX19_01660at 1741.998 kb on - strand, within MPMX19_01660at 1741.998 kb on - strand, within MPMX19_01660at 1741.998 kb on - strand, within MPMX19_01660at 1741.998 kb on - strand, within MPMX19_01660at 1741.998 kb on - strand, within MPMX19_01660at 1741.998 kb on - strand, within MPMX19_01660at 1741.998 kb on - strand, within MPMX19_01660at 1741.998 kb on - strand, within MPMX19_01660at 1741.998 kb on - strand, within MPMX19_01660at 1742.060 kb on + strand, within MPMX19_01660at 1742.060 kb on + strand, within MPMX19_01660at 1742.060 kb on + strand, within MPMX19_01660at 1742.061 kb on - strand, within MPMX19_01660at 1742.061 kb on - strand, within MPMX19_01660at 1742.061 kb on - strand, within MPMX19_01660at 1742.076 kb on + strand, within MPMX19_01660at 1742.076 kb on + strand, within MPMX19_01660at 1742.309 kb on + strand, within MPMX19_01660at 1742.309 kb on + strand, within MPMX19_01660at 1742.309 kb on + strand, within MPMX19_01660at 1742.309 kb on + strand, within MPMX19_01660at 1742.309 kb on + strand, within MPMX19_01660at 1742.310 kb on - strand, within MPMX19_01660at 1742.310 kb on - strand, within MPMX19_01660at 1742.310 kb on - strand, within MPMX19_01660at 1742.310 kb on - strand, within MPMX19_01660at 1742.310 kb on - strand, within MPMX19_01660at 1742.310 kb on - strand, within MPMX19_01660at 1742.310 kb on - strand, within MPMX19_01660at 1742.310 kb on - strand, within MPMX19_01660at 1742.310 kb on - strand, within MPMX19_01660at 1742.310 kb on - strand, within MPMX19_01660at 1742.463 kb on - strandat 1742.483 kb on + strandat 1742.483 kb on + strandat 1742.483 kb on + strandat 1742.483 kb on + strandat 1742.483 kb on + strandat 1742.483 kb on + strandat 1742.483 kb on + strandat 1742.484 kb on - strandat 1742.484 kb on - strandat 1742.484 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MGL
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1,741,215 - -0.5
1,741,215 - -1.1
1,741,274 + -0.3
1,741,275 - -2.2
1,741,275 - -0.8
1,741,275 - -0.6
1,741,275 - -0.4
1,741,275 - -1.0
1,741,309 + -1.4
1,741,510 + -0.5
1,741,510 + -0.7
1,741,510 + -0.7
1,741,510 + +0.5
1,741,623 - -0.1
1,741,623 - +0.2
1,741,698 - +0.8
1,741,997 + MPMX19_01660 0.41 -1.2
1,741,997 + MPMX19_01660 0.41 -0.8
1,741,997 + MPMX19_01660 0.41 -0.1
1,741,997 + MPMX19_01660 0.41 -0.5
1,741,997 + MPMX19_01660 0.41 +0.0
1,741,997 + MPMX19_01660 0.41 +0.2
1,741,997 + MPMX19_01660 0.41 -0.8
1,741,997 + MPMX19_01660 0.41 -1.8
1,741,997 + MPMX19_01660 0.41 +0.6
1,741,997 + MPMX19_01660 0.41 -1.4
1,741,997 + MPMX19_01660 0.41 +0.9
1,741,997 + MPMX19_01660 0.41 +0.3
1,741,997 + MPMX19_01660 0.41 -0.6
1,741,997 + MPMX19_01660 0.41 -0.8
1,741,997 + MPMX19_01660 0.41 -0.7
1,741,997 + MPMX19_01660 0.41 -1.4
1,741,997 + MPMX19_01660 0.41 -0.3
1,741,997 + MPMX19_01660 0.41 -1.4
1,741,997 + MPMX19_01660 0.41 -0.9
1,741,997 + MPMX19_01660 0.41 +0.6
1,741,997 + MPMX19_01660 0.41 -0.3
1,741,997 + MPMX19_01660 0.41 -0.7
1,741,997 + MPMX19_01660 0.41 +0.2
1,741,997 + MPMX19_01660 0.41 +0.3
1,741,997 + MPMX19_01660 0.41 -0.5
1,741,997 + MPMX19_01660 0.41 -0.0
1,741,997 + MPMX19_01660 0.41 -0.4
1,741,998 - MPMX19_01660 0.41 -1.1
1,741,998 - MPMX19_01660 0.41 +0.5
1,741,998 - MPMX19_01660 0.41 +0.0
1,741,998 - MPMX19_01660 0.41 -0.4
1,741,998 - MPMX19_01660 0.41 +0.9
1,741,998 - MPMX19_01660 0.41 -0.5
1,741,998 - MPMX19_01660 0.41 -2.0
1,741,998 - MPMX19_01660 0.41 +0.2
1,741,998 - MPMX19_01660 0.41 -1.4
1,741,998 - MPMX19_01660 0.41 +1.0
1,741,998 - MPMX19_01660 0.41 -0.3
1,741,998 - MPMX19_01660 0.41 -0.6
1,741,998 - MPMX19_01660 0.41 +0.4
1,741,998 - MPMX19_01660 0.41 -0.2
1,741,998 - MPMX19_01660 0.41 -1.3
1,741,998 - MPMX19_01660 0.41 +0.2
1,741,998 - MPMX19_01660 0.41 +0.2
1,741,998 - MPMX19_01660 0.41 -1.5
1,741,998 - MPMX19_01660 0.41 +0.2
1,741,998 - MPMX19_01660 0.41 -0.3
1,741,998 - MPMX19_01660 0.41 -1.4
1,741,998 - MPMX19_01660 0.41 -0.7
1,741,998 - MPMX19_01660 0.41 +1.5
1,741,998 - MPMX19_01660 0.41 -0.4
1,742,060 + MPMX19_01660 0.48 -1.0
1,742,060 + MPMX19_01660 0.48 -1.5
1,742,060 + MPMX19_01660 0.48 -0.3
1,742,061 - MPMX19_01660 0.48 -0.7
1,742,061 - MPMX19_01660 0.48 -2.1
1,742,061 - MPMX19_01660 0.48 +0.5
1,742,076 + MPMX19_01660 0.50 +1.2
1,742,076 + MPMX19_01660 0.50 +1.5
1,742,309 + MPMX19_01660 0.75 +0.5
1,742,309 + MPMX19_01660 0.75 -0.9
1,742,309 + MPMX19_01660 0.75 -1.5
1,742,309 + MPMX19_01660 0.75 +1.9
1,742,309 + MPMX19_01660 0.75 +1.3
1,742,310 - MPMX19_01660 0.75 +0.2
1,742,310 - MPMX19_01660 0.75 -1.1
1,742,310 - MPMX19_01660 0.75 -1.1
1,742,310 - MPMX19_01660 0.75 -0.7
1,742,310 - MPMX19_01660 0.75 -0.8
1,742,310 - MPMX19_01660 0.75 -0.5
1,742,310 - MPMX19_01660 0.75 -1.7
1,742,310 - MPMX19_01660 0.75 +0.2
1,742,310 - MPMX19_01660 0.75 -1.3
1,742,310 - MPMX19_01660 0.75 -0.4
1,742,463 - +0.2
1,742,483 + -1.3
1,742,483 + +1.2
1,742,483 + -0.9
1,742,483 + -2.8
1,742,483 + -0.1
1,742,483 + +0.3
1,742,483 + -1.0
1,742,484 - -0.5
1,742,484 - -2.6
1,742,484 - -0.3

Or see this region's nucleotide sequence