Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_01634

Experiment: MGL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_01633 and MPMX19_01634 are separated by 198 nucleotidesMPMX19_01634 and MPMX19_01635 are separated by 206 nucleotides MPMX19_01633: MPMX19_01633 - Dihydroorotase, at 1,714,983 to 1,716,038 _01633 MPMX19_01634: MPMX19_01634 - hypothetical protein, at 1,716,237 to 1,716,845 _01634 MPMX19_01635: MPMX19_01635 - Histidine--tRNA ligase, at 1,717,052 to 1,718,401 _01635 Position (kb) 1716 1717Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1716.090 kb on + strandat 1716.090 kb on + strandat 1716.090 kb on + strandat 1716.090 kb on + strandat 1716.090 kb on + strandat 1716.091 kb on - strandat 1716.091 kb on - strandat 1716.091 kb on - strandat 1716.091 kb on - strandat 1716.091 kb on - strandat 1716.091 kb on - strandat 1716.091 kb on - strandat 1716.091 kb on - strandat 1716.222 kb on + strandat 1716.222 kb on + strandat 1716.222 kb on + strandat 1716.222 kb on + strandat 1716.222 kb on + strandat 1716.222 kb on + strandat 1716.222 kb on + strandat 1716.222 kb on + strandat 1716.222 kb on + strandat 1716.222 kb on + strandat 1716.223 kb on - strandat 1716.223 kb on - strandat 1716.223 kb on - strandat 1716.223 kb on - strandat 1716.223 kb on - strandat 1716.238 kb on + strandat 1716.238 kb on + strandat 1716.239 kb on - strandat 1716.239 kb on - strandat 1716.239 kb on - strandat 1716.239 kb on - strandat 1716.409 kb on + strand, within MPMX19_01634at 1716.409 kb on + strand, within MPMX19_01634at 1716.409 kb on + strand, within MPMX19_01634at 1716.409 kb on + strand, within MPMX19_01634at 1716.409 kb on + strand, within MPMX19_01634at 1716.409 kb on + strand, within MPMX19_01634at 1716.409 kb on + strand, within MPMX19_01634at 1716.409 kb on + strand, within MPMX19_01634at 1716.409 kb on + strand, within MPMX19_01634at 1716.409 kb on + strand, within MPMX19_01634at 1716.410 kb on - strand, within MPMX19_01634at 1716.410 kb on - strand, within MPMX19_01634at 1716.410 kb on - strand, within MPMX19_01634at 1716.410 kb on - strand, within MPMX19_01634at 1716.410 kb on - strand, within MPMX19_01634at 1716.410 kb on - strand, within MPMX19_01634at 1716.410 kb on - strand, within MPMX19_01634at 1716.410 kb on - strand, within MPMX19_01634at 1716.410 kb on - strand, within MPMX19_01634at 1716.410 kb on - strand, within MPMX19_01634at 1716.410 kb on - strand, within MPMX19_01634at 1716.410 kb on - strand, within MPMX19_01634at 1716.892 kb on + strandat 1716.892 kb on + strandat 1716.892 kb on + strandat 1716.892 kb on + strandat 1716.892 kb on + strandat 1716.893 kb on - strandat 1716.893 kb on - strandat 1716.893 kb on - strandat 1716.893 kb on - strandat 1716.893 kb on - strandat 1716.893 kb on - strandat 1717.029 kb on + strandat 1717.029 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MGL
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1,716,090 + +0.2
1,716,090 + -1.3
1,716,090 + -1.5
1,716,090 + -1.1
1,716,090 + +0.3
1,716,091 - +1.1
1,716,091 - -0.4
1,716,091 - -1.2
1,716,091 - -0.2
1,716,091 - +1.3
1,716,091 - -2.3
1,716,091 - -1.6
1,716,091 - -0.5
1,716,222 + +0.7
1,716,222 + -0.8
1,716,222 + -0.7
1,716,222 + -1.8
1,716,222 + +1.1
1,716,222 + -0.5
1,716,222 + +0.3
1,716,222 + -1.3
1,716,222 + -0.8
1,716,222 + -1.1
1,716,223 - +0.8
1,716,223 - +1.5
1,716,223 - -0.5
1,716,223 - +0.1
1,716,223 - -0.6
1,716,238 + -1.9
1,716,238 + +0.5
1,716,239 - -0.3
1,716,239 - -1.7
1,716,239 - -1.0
1,716,239 - -1.3
1,716,409 + MPMX19_01634 0.28 -0.5
1,716,409 + MPMX19_01634 0.28 -0.5
1,716,409 + MPMX19_01634 0.28 -1.4
1,716,409 + MPMX19_01634 0.28 -0.1
1,716,409 + MPMX19_01634 0.28 +0.7
1,716,409 + MPMX19_01634 0.28 -1.8
1,716,409 + MPMX19_01634 0.28 -1.1
1,716,409 + MPMX19_01634 0.28 -0.3
1,716,409 + MPMX19_01634 0.28 +0.2
1,716,409 + MPMX19_01634 0.28 -0.1
1,716,410 - MPMX19_01634 0.28 -0.8
1,716,410 - MPMX19_01634 0.28 -0.8
1,716,410 - MPMX19_01634 0.28 -0.3
1,716,410 - MPMX19_01634 0.28 -0.2
1,716,410 - MPMX19_01634 0.28 -2.0
1,716,410 - MPMX19_01634 0.28 -1.5
1,716,410 - MPMX19_01634 0.28 -0.1
1,716,410 - MPMX19_01634 0.28 -1.2
1,716,410 - MPMX19_01634 0.28 -2.9
1,716,410 - MPMX19_01634 0.28 -0.1
1,716,410 - MPMX19_01634 0.28 -2.6
1,716,410 - MPMX19_01634 0.28 -0.5
1,716,892 + -0.5
1,716,892 + +1.8
1,716,892 + +0.2
1,716,892 + -0.4
1,716,892 + -0.4
1,716,893 - -0.0
1,716,893 - -0.1
1,716,893 - +0.3
1,716,893 - +0.1
1,716,893 - -0.3
1,716,893 - +0.4
1,717,029 + +0.9
1,717,029 + +0.9

Or see this region's nucleotide sequence