Experiment: Bas69
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt trbJ and trbB overlap by 11 nucleotides trbB and traQ overlap by 14 nucleotides traQ and NOLOHH_24755 are separated by 80 nucleotides NOLOHH_24755 and trbA are separated by 1 nucleotides trbA and traF are separated by 15 nucleotides
NOLOHH_24740: trbJ - P-type conjugative transfer protein TrbJ, at 90,166 to 90,447
trbJ
NOLOHH_24745: trbB - type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB, at 90,437 to 90,982
trbB
NOLOHH_24750: traQ - type-F conjugative transfer system pilin chaperone TraQ, at 90,969 to 91,253
traQ
NOLOHH_24755: NOLOHH_24755 - toxin ArtA, at 91,334 to 91,609
_24755
NOLOHH_24760: trbA - conjugal transfer protein TrbA, at 91,611 to 91,958
trbA
NOLOHH_24765: traF - type-F conjugative transfer system pilin assembly protein TraF, at 91,974 to 92,717
traF
Position (kb) 91
92 Strain fitness (log2 ratio) -2
-1
0
1
2 at 90.438 kb on + strand at 90.439 kb on - strand at 90.439 kb on - strand at 90.463 kb on - strand at 90.521 kb on + strand, within trbB at 90.587 kb on - strand, within trbB at 90.587 kb on - strand, within trbB at 90.735 kb on + strand, within trbB at 90.754 kb on + strand, within trbB at 90.965 kb on + strand at 91.197 kb on + strand, within traQ at 91.218 kb on - strand, within traQ at 91.479 kb on + strand, within NOLOHH_24755 at 91.810 kb on + strand, within trbA at 91.813 kb on - strand, within trbA at 91.875 kb on - strand, within trbA at 92.105 kb on - strand, within traF at 92.193 kb on - strand, within traF at 92.207 kb on - strand, within traF at 92.207 kb on - strand, within traF at 92.374 kb on + strand, within traF at 92.374 kb on + strand, within traF at 92.385 kb on - strand, within traF at 92.385 kb on - strand, within traF at 92.385 kb on - strand, within traF at 92.386 kb on + strand, within traF at 92.387 kb on - strand, within traF at 92.387 kb on - strand, within traF at 92.476 kb on + strand, within traF at 92.477 kb on - strand, within traF at 92.477 kb on - strand, within traF at 92.511 kb on - strand, within traF at 92.511 kb on - strand, within traF at 92.511 kb on - strand, within traF at 92.511 kb on - strand, within traF at 92.511 kb on - strand, within traF
Per-strain Table
Position Strand Gene LocusTag Fraction Bas69 remove 90,438 + -2.3 90,439 - +0.3 90,439 - +0.7 90,463 - -0.3 90,521 + trbB NOLOHH_24745 0.15 -2.2 90,587 - trbB NOLOHH_24745 0.27 +0.3 90,587 - trbB NOLOHH_24745 0.27 +0.7 90,735 + trbB NOLOHH_24745 0.55 -0.3 90,754 + trbB NOLOHH_24745 0.58 -0.7 90,965 + -1.0 91,197 + traQ NOLOHH_24750 0.80 -1.0 91,218 - traQ NOLOHH_24750 0.87 -1.3 91,479 + NOLOHH_24755 0.53 -1.5 91,810 + trbA NOLOHH_24760 0.57 +0.7 91,813 - trbA NOLOHH_24760 0.58 +0.1 91,875 - trbA NOLOHH_24760 0.76 +0.3 92,105 - traF NOLOHH_24765 0.18 +2.3 92,193 - traF NOLOHH_24765 0.29 +0.3 92,207 - traF NOLOHH_24765 0.31 +1.0 92,207 - traF NOLOHH_24765 0.31 +1.6 92,374 + traF NOLOHH_24765 0.54 +1.7 92,374 + traF NOLOHH_24765 0.54 +0.5 92,385 - traF NOLOHH_24765 0.55 -0.7 92,385 - traF NOLOHH_24765 0.55 +0.7 92,385 - traF NOLOHH_24765 0.55 -1.2 92,386 + traF NOLOHH_24765 0.55 +0.3 92,387 - traF NOLOHH_24765 0.56 -0.3 92,387 - traF NOLOHH_24765 0.56 +1.3 92,476 + traF NOLOHH_24765 0.67 -0.3 92,477 - traF NOLOHH_24765 0.68 +0.3 92,477 - traF NOLOHH_24765 0.68 +0.5 92,511 - traF NOLOHH_24765 0.72 -0.6 92,511 - traF NOLOHH_24765 0.72 +0.7 92,511 - traF NOLOHH_24765 0.72 -0.9 92,511 - traF NOLOHH_24765 0.72 -0.3 92,511 - traF NOLOHH_24765 0.72 -2.5
Or see this region's nucleotide sequence