Experiment: Bas69
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt flgI and flgH are separated by 11 nucleotides flgH and flgG are separated by 52 nucleotides flgG and flgF are separated by 137 nucleotides flgF and flgE are separated by 19 nucleotides
NOLOHH_21170: flgI - flagellar basal body P-ring protein FlgI, at 4,166,716 to 4,167,813
flgI
NOLOHH_21175: flgH - flagellar basal body L-ring protein FlgH, at 4,167,825 to 4,168,523
flgH
NOLOHH_21180: flgG - flagellar basal-body rod protein FlgG, at 4,168,576 to 4,169,358
flgG
NOLOHH_21185: flgF - flagellar basal-body rod protein FlgF, at 4,169,496 to 4,170,251
flgF
NOLOHH_21190: flgE - flagellar hook protein FlgE, at 4,170,271 to 4,171,476
flgE
Position (kb)
4168
4169
4170 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 4167.600 kb on + strand, within flgI at 4167.782 kb on - strand at 4167.791 kb on - strand at 4167.889 kb on + strand at 4167.890 kb on - strand at 4167.905 kb on - strand, within flgH at 4168.059 kb on + strand, within flgH at 4168.097 kb on + strand, within flgH at 4168.305 kb on - strand, within flgH at 4168.345 kb on + strand, within flgH at 4168.346 kb on - strand, within flgH at 4168.350 kb on - strand, within flgH at 4168.373 kb on + strand, within flgH at 4168.502 kb on + strand at 4168.502 kb on + strand at 4168.503 kb on - strand at 4168.626 kb on + strand at 4168.663 kb on - strand, within flgG at 4168.693 kb on - strand, within flgG at 4168.706 kb on + strand, within flgG at 4168.706 kb on + strand, within flgG at 4168.914 kb on + strand, within flgG at 4169.119 kb on + strand, within flgG at 4169.161 kb on + strand, within flgG at 4169.268 kb on + strand, within flgG at 4169.358 kb on + strand at 4169.378 kb on + strand at 4169.793 kb on - strand, within flgF at 4169.793 kb on - strand, within flgF at 4170.236 kb on - strand at 4170.338 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas69 remove 4,167,600 + flgI NOLOHH_21170 0.81 -1.4 4,167,782 - -1.9 4,167,791 - -1.4 4,167,889 + -1.4 4,167,890 - -0.1 4,167,905 - flgH NOLOHH_21175 0.11 +0.9 4,168,059 + flgH NOLOHH_21175 0.33 -0.7 4,168,097 + flgH NOLOHH_21175 0.39 -0.7 4,168,305 - flgH NOLOHH_21175 0.69 -0.1 4,168,345 + flgH NOLOHH_21175 0.74 -2.9 4,168,346 - flgH NOLOHH_21175 0.75 -1.7 4,168,350 - flgH NOLOHH_21175 0.75 +0.9 4,168,373 + flgH NOLOHH_21175 0.78 -2.6 4,168,502 + -2.4 4,168,502 + +0.9 4,168,503 - -0.1 4,168,626 + -0.7 4,168,663 - flgG NOLOHH_21180 0.11 -1.4 4,168,693 - flgG NOLOHH_21180 0.15 -1.9 4,168,706 + flgG NOLOHH_21180 0.17 -2.3 4,168,706 + flgG NOLOHH_21180 0.17 -1.1 4,168,914 + flgG NOLOHH_21180 0.43 +0.9 4,169,119 + flgG NOLOHH_21180 0.69 -2.0 4,169,161 + flgG NOLOHH_21180 0.75 -1.1 4,169,268 + flgG NOLOHH_21180 0.88 +0.9 4,169,358 + -0.7 4,169,378 + -1.7 4,169,793 - flgF NOLOHH_21185 0.39 -0.1 4,169,793 - flgF NOLOHH_21185 0.39 -3.1 4,170,236 - -2.1 4,170,338 + -0.1
Or see this region's nucleotide sequence