Strain Fitness in Escherichia coli ECOR27 around NOLOHH_21180

Experiment: Bas69

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntflgI and flgH are separated by 11 nucleotidesflgH and flgG are separated by 52 nucleotidesflgG and flgF are separated by 137 nucleotidesflgF and flgE are separated by 19 nucleotides NOLOHH_21170: flgI - flagellar basal body P-ring protein FlgI, at 4,166,716 to 4,167,813 flgI NOLOHH_21175: flgH - flagellar basal body L-ring protein FlgH, at 4,167,825 to 4,168,523 flgH NOLOHH_21180: flgG - flagellar basal-body rod protein FlgG, at 4,168,576 to 4,169,358 flgG NOLOHH_21185: flgF - flagellar basal-body rod protein FlgF, at 4,169,496 to 4,170,251 flgF NOLOHH_21190: flgE - flagellar hook protein FlgE, at 4,170,271 to 4,171,476 flgE Position (kb) 4168 4169 4170Strain fitness (log2 ratio) -3 -2 -1 0 1at 4167.600 kb on + strand, within flgIat 4167.782 kb on - strandat 4167.791 kb on - strandat 4167.889 kb on + strandat 4167.890 kb on - strandat 4167.905 kb on - strand, within flgHat 4168.059 kb on + strand, within flgHat 4168.097 kb on + strand, within flgHat 4168.305 kb on - strand, within flgHat 4168.345 kb on + strand, within flgHat 4168.346 kb on - strand, within flgHat 4168.350 kb on - strand, within flgHat 4168.373 kb on + strand, within flgHat 4168.502 kb on + strandat 4168.502 kb on + strandat 4168.503 kb on - strandat 4168.626 kb on + strandat 4168.663 kb on - strand, within flgGat 4168.693 kb on - strand, within flgGat 4168.706 kb on + strand, within flgGat 4168.706 kb on + strand, within flgGat 4168.914 kb on + strand, within flgGat 4169.119 kb on + strand, within flgGat 4169.161 kb on + strand, within flgGat 4169.268 kb on + strand, within flgGat 4169.358 kb on + strandat 4169.378 kb on + strandat 4169.793 kb on - strand, within flgFat 4169.793 kb on - strand, within flgFat 4170.236 kb on - strandat 4170.338 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Bas69
remove
4,167,600 + flgI NOLOHH_21170 0.81 -1.4
4,167,782 - -1.9
4,167,791 - -1.4
4,167,889 + -1.4
4,167,890 - -0.1
4,167,905 - flgH NOLOHH_21175 0.11 +0.9
4,168,059 + flgH NOLOHH_21175 0.33 -0.7
4,168,097 + flgH NOLOHH_21175 0.39 -0.7
4,168,305 - flgH NOLOHH_21175 0.69 -0.1
4,168,345 + flgH NOLOHH_21175 0.74 -2.9
4,168,346 - flgH NOLOHH_21175 0.75 -1.7
4,168,350 - flgH NOLOHH_21175 0.75 +0.9
4,168,373 + flgH NOLOHH_21175 0.78 -2.6
4,168,502 + -2.4
4,168,502 + +0.9
4,168,503 - -0.1
4,168,626 + -0.7
4,168,663 - flgG NOLOHH_21180 0.11 -1.4
4,168,693 - flgG NOLOHH_21180 0.15 -1.9
4,168,706 + flgG NOLOHH_21180 0.17 -2.3
4,168,706 + flgG NOLOHH_21180 0.17 -1.1
4,168,914 + flgG NOLOHH_21180 0.43 +0.9
4,169,119 + flgG NOLOHH_21180 0.69 -2.0
4,169,161 + flgG NOLOHH_21180 0.75 -1.1
4,169,268 + flgG NOLOHH_21180 0.88 +0.9
4,169,358 + -0.7
4,169,378 + -1.7
4,169,793 - flgF NOLOHH_21185 0.39 -0.1
4,169,793 - flgF NOLOHH_21185 0.39 -3.1
4,170,236 - -2.1
4,170,338 + -0.1

Or see this region's nucleotide sequence