Strain Fitness in Escherichia coli ECOR27 around NOLOHH_19740

Experiment: Bas69

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntessD and tolA are separated by 251 nucleotidestolA and tolA are separated by 150 nucleotides NOLOHH_19730: essD - phage lysis protein EssD, at 3,894,751 to 3,894,966 essD NOLOHH_19735: tolA - TolA family protein, at 3,895,218 to 3,895,613 tolA NOLOHH_19740: tolA - cell envelope integrity protein TolA, at 3,895,764 to 3,896,192 tolA Position (kb) 3895 3896 3897Strain fitness (log2 ratio) -1 0 1 2 3at 3894.874 kb on + strand, within essDat 3895.004 kb on - strandat 3895.004 kb on - strandat 3895.648 kb on - strandat 3895.803 kb on - strandat 3896.031 kb on - strand, within tolAat 3896.145 kb on - strand, within tolAat 3896.229 kb on - strandat 3896.842 kb on - strandat 3896.881 kb on - strandat 3896.881 kb on - strandat 3897.016 kb on - strandat 3897.052 kb on - strandat 3897.052 kb on - strandat 3897.054 kb on - strandat 3897.068 kb on - strandat 3897.101 kb on - strandat 3897.101 kb on - strandat 3897.144 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas69
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3,894,874 + essD NOLOHH_19730 0.57 +3.3
3,895,004 - +0.7
3,895,004 - +0.7
3,895,648 - +0.7
3,895,803 - +0.7
3,896,031 - tolA NOLOHH_19740 0.62 -1.6
3,896,145 - tolA NOLOHH_19740 0.89 -1.6
3,896,229 - +0.4
3,896,842 - -0.3
3,896,881 - -1.6
3,896,881 - -1.0
3,897,016 - -1.6
3,897,052 - -0.8
3,897,052 - -0.3
3,897,054 - -0.6
3,897,068 - +0.9
3,897,101 - -1.3
3,897,101 - +1.2
3,897,144 - +2.5

Or see this region's nucleotide sequence