Strain Fitness in Escherichia coli ECOR27 around NOLOHH_18720

Experiment: Bas69

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntNOLOHH_18710 and marB are separated by 56 nucleotidesmarB and marA are separated by 31 nucleotidesmarA and marR are separated by 19 nucleotidesmarR and marC are separated by 211 nucleotides NOLOHH_18710: NOLOHH_18710 - 6-phospho-beta-glucosidase, at 3,662,878 to 3,664,317 _18710 NOLOHH_18715: marB - multiple antibiotic resistance protein MarB, at 3,664,374 to 3,664,592 marB NOLOHH_18720: marA - MDR efflux pump AcrAB transcriptional activator MarA, at 3,664,624 to 3,665,007 marA NOLOHH_18725: marR - multiple antibiotic resistance transcriptional regulator MarR, at 3,665,027 to 3,665,461 marR NOLOHH_18730: marC - NAAT family transporter MarC, at 3,665,673 to 3,666,338 marC Position (kb) 3664 3665 3666Strain fitness (log2 ratio) -2 -1 0 1 2at 3663.904 kb on + strand, within NOLOHH_18710at 3663.912 kb on + strand, within NOLOHH_18710at 3664.260 kb on + strandat 3664.376 kb on - strandat 3664.376 kb on - strandat 3664.376 kb on - strandat 3664.380 kb on - strandat 3664.380 kb on - strandat 3664.393 kb on + strandat 3664.393 kb on + strandat 3664.397 kb on - strand, within marBat 3664.421 kb on + strand, within marBat 3664.570 kb on - strand, within marBat 3664.693 kb on - strand, within marAat 3664.773 kb on - strand, within marAat 3664.824 kb on + strand, within marAat 3665.121 kb on - strand, within marRat 3665.121 kb on - strand, within marRat 3665.121 kb on - strand, within marRat 3665.142 kb on - strand, within marRat 3665.186 kb on - strand, within marRat 3665.222 kb on - strand, within marRat 3665.243 kb on - strand, within marRat 3665.297 kb on - strand, within marRat 3665.297 kb on - strand, within marRat 3665.297 kb on - strand, within marRat 3665.300 kb on - strand, within marRat 3665.300 kb on - strand, within marRat 3665.300 kb on - strand, within marRat 3665.333 kb on - strand, within marRat 3665.333 kb on - strand, within marRat 3665.368 kb on - strand, within marRat 3665.368 kb on - strand, within marRat 3665.368 kb on - strand, within marRat 3665.429 kb on - strandat 3665.453 kb on - strandat 3665.481 kb on - strandat 3665.820 kb on + strand, within marCat 3665.873 kb on + strand, within marC

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas69
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3,663,904 + NOLOHH_18710 0.71 +0.8
3,663,912 + NOLOHH_18710 0.72 +0.8
3,664,260 + +1.8
3,664,376 - -0.2
3,664,376 - -0.8
3,664,376 - -0.2
3,664,380 - +0.8
3,664,380 - -0.2
3,664,393 + -0.2
3,664,393 + +0.8
3,664,397 - marB NOLOHH_18715 0.11 +1.5
3,664,421 + marB NOLOHH_18715 0.21 +1.8
3,664,570 - marB NOLOHH_18715 0.89 -0.2
3,664,693 - marA NOLOHH_18720 0.18 -0.8
3,664,773 - marA NOLOHH_18720 0.39 -0.8
3,664,824 + marA NOLOHH_18720 0.52 -0.8
3,665,121 - marR NOLOHH_18725 0.22 +0.3
3,665,121 - marR NOLOHH_18725 0.22 -1.0
3,665,121 - marR NOLOHH_18725 0.22 +0.8
3,665,142 - marR NOLOHH_18725 0.26 -1.2
3,665,186 - marR NOLOHH_18725 0.37 -0.9
3,665,222 - marR NOLOHH_18725 0.45 +1.7
3,665,243 - marR NOLOHH_18725 0.50 +0.5
3,665,297 - marR NOLOHH_18725 0.62 -0.2
3,665,297 - marR NOLOHH_18725 0.62 -0.2
3,665,297 - marR NOLOHH_18725 0.62 -0.5
3,665,300 - marR NOLOHH_18725 0.63 -1.8
3,665,300 - marR NOLOHH_18725 0.63 -0.0
3,665,300 - marR NOLOHH_18725 0.63 +1.8
3,665,333 - marR NOLOHH_18725 0.70 +1.3
3,665,333 - marR NOLOHH_18725 0.70 +0.1
3,665,368 - marR NOLOHH_18725 0.78 -1.6
3,665,368 - marR NOLOHH_18725 0.78 +0.5
3,665,368 - marR NOLOHH_18725 0.78 +1.7
3,665,429 - +1.0
3,665,453 - -0.4
3,665,481 - -1.1
3,665,820 + marC NOLOHH_18730 0.22 +0.8
3,665,873 + marC NOLOHH_18730 0.30 -0.2

Or see this region's nucleotide sequence