Strain Fitness in Escherichia coli ECOR27 around NOLOHH_17565

Experiment: Bas69

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntydiY and yniD are separated by 52 nucleotidesyniD and NOLOHH_17570 are separated by 175 nucleotides NOLOHH_17560: ydiY - Uncharacterized protein YdiY, at 3,447,132 to 3,447,890 ydiY NOLOHH_17565: yniD - Uncharacterized protein YniD, at 3,447,943 to 3,448,050 yniD NOLOHH_17570: NOLOHH_17570 - ShET2 enterotoxin, N-terminal region, at 3,448,226 to 3,450,124 _17570 Position (kb) 3447 3448 3449Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3446.947 kb on - strandat 3447.164 kb on + strandat 3447.454 kb on + strand, within ydiYat 3447.462 kb on + strand, within ydiYat 3447.472 kb on + strand, within ydiYat 3447.504 kb on + strand, within ydiYat 3447.618 kb on + strand, within ydiYat 3447.618 kb on + strand, within ydiYat 3447.760 kb on + strand, within ydiYat 3447.848 kb on + strandat 3447.888 kb on + strandat 3447.888 kb on + strandat 3447.982 kb on - strand, within yniDat 3448.220 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas69
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3,446,947 - +0.7
3,447,164 + -1.9
3,447,454 + ydiY NOLOHH_17560 0.42 +0.7
3,447,462 + ydiY NOLOHH_17560 0.43 +3.5
3,447,472 + ydiY NOLOHH_17560 0.45 +0.7
3,447,504 + ydiY NOLOHH_17560 0.49 +1.7
3,447,618 + ydiY NOLOHH_17560 0.64 -1.3
3,447,618 + ydiY NOLOHH_17560 0.64 -0.6
3,447,760 + ydiY NOLOHH_17560 0.83 +3.4
3,447,848 + -0.3
3,447,888 + +0.7
3,447,888 + +1.7
3,447,982 - yniD NOLOHH_17565 0.36 -1.9
3,448,220 - +0.7

Or see this region's nucleotide sequence