Strain Fitness in Escherichia coli ECOR27 around NOLOHH_16315

Experiment: Bas69

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntfliM and fliL are separated by 4 nucleotidesfliL and fliK are separated by 104 nucleotides NOLOHH_16310: fliM - flagellar motor switch protein FliM, at 3,212,222 to 3,213,226 fliM NOLOHH_16315: fliL - flagellar basal body-associated protein FliL, at 3,213,231 to 3,213,695 fliL NOLOHH_16320: fliK - flagellar hook length control protein FliK, at 3,213,800 to 3,214,927 fliK Position (kb) 3213 3214Strain fitness (log2 ratio) -2 -1 0 1at 3212.290 kb on - strandat 3212.582 kb on - strand, within fliMat 3212.656 kb on + strand, within fliMat 3212.710 kb on + strand, within fliMat 3213.215 kb on - strandat 3213.475 kb on + strand, within fliLat 3213.596 kb on - strand, within fliLat 3213.596 kb on - strand, within fliLat 3213.679 kb on - strandat 3213.737 kb on + strandat 3213.834 kb on - strandat 3213.845 kb on + strandat 3213.868 kb on + strandat 3213.902 kb on + strandat 3214.049 kb on + strand, within fliKat 3214.049 kb on + strand, within fliKat 3214.050 kb on - strand, within fliKat 3214.186 kb on + strand, within fliKat 3214.282 kb on + strand, within fliKat 3214.339 kb on + strand, within fliKat 3214.367 kb on + strand, within fliK

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas69
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3,212,290 - -2.0
3,212,582 - fliM NOLOHH_16310 0.36 -2.4
3,212,656 + fliM NOLOHH_16310 0.43 -0.2
3,212,710 + fliM NOLOHH_16310 0.49 +0.8
3,213,215 - -1.2
3,213,475 + fliL NOLOHH_16315 0.52 +0.8
3,213,596 - fliL NOLOHH_16315 0.78 -1.8
3,213,596 - fliL NOLOHH_16315 0.78 -1.2
3,213,679 - -0.2
3,213,737 + -0.2
3,213,834 - -2.0
3,213,845 + -1.5
3,213,868 + -1.2
3,213,902 + +0.4
3,214,049 + fliK NOLOHH_16320 0.22 -1.0
3,214,049 + fliK NOLOHH_16320 0.22 -1.2
3,214,050 - fliK NOLOHH_16320 0.22 -1.5
3,214,186 + fliK NOLOHH_16320 0.34 -0.2
3,214,282 + fliK NOLOHH_16320 0.43 -1.5
3,214,339 + fliK NOLOHH_16320 0.48 +0.8
3,214,367 + fliK NOLOHH_16320 0.50 -1.8

Or see this region's nucleotide sequence