Strain Fitness in Escherichia coli ECOR27 around NOLOHH_15735

Experiment: Bas69

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntNOLOHH_15730 and galF are separated by 242 nucleotidesgalF and NOLOHH_15740 are separated by 360 nucleotidesNOLOHH_15740 and neuB are separated by 4 nucleotides NOLOHH_15730: NOLOHH_15730 - N-acetyl-alpha-D-glucosaminyl-diphospho-ditrans,o ctacis-undecaprenol 4-epimerase, at 3,099,734 to 3,100,729 _15730 NOLOHH_15735: galF - UTP--glucose-1-phosphate uridylyltransferase GalF, at 3,100,972 to 3,101,865 galF NOLOHH_15740: NOLOHH_15740 - shikimate dehydrogenase, at 3,102,226 to 3,102,846 _15740 NOLOHH_15745: neuB - N-acetylneuraminate synthase, at 3,102,851 to 3,103,891 neuB Position (kb) 3100 3101 3102Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 3099.977 kb on + strand, within NOLOHH_15730at 3100.042 kb on + strand, within NOLOHH_15730at 3100.051 kb on + strand, within NOLOHH_15730at 3100.138 kb on + strand, within NOLOHH_15730at 3100.138 kb on + strand, within NOLOHH_15730at 3100.138 kb on + strand, within NOLOHH_15730at 3100.172 kb on + strand, within NOLOHH_15730at 3100.253 kb on + strand, within NOLOHH_15730at 3100.253 kb on + strand, within NOLOHH_15730at 3100.255 kb on + strand, within NOLOHH_15730at 3100.288 kb on + strand, within NOLOHH_15730at 3100.288 kb on + strand, within NOLOHH_15730at 3100.313 kb on + strand, within NOLOHH_15730at 3100.313 kb on + strand, within NOLOHH_15730at 3100.313 kb on + strand, within NOLOHH_15730at 3100.313 kb on + strand, within NOLOHH_15730at 3100.313 kb on + strand, within NOLOHH_15730at 3100.315 kb on + strand, within NOLOHH_15730at 3100.315 kb on + strand, within NOLOHH_15730at 3100.328 kb on + strand, within NOLOHH_15730at 3100.358 kb on + strand, within NOLOHH_15730at 3100.396 kb on + strand, within NOLOHH_15730at 3100.477 kb on + strand, within NOLOHH_15730at 3100.477 kb on + strand, within NOLOHH_15730at 3100.525 kb on + strand, within NOLOHH_15730at 3100.540 kb on + strand, within NOLOHH_15730at 3100.645 kb on + strandat 3100.645 kb on + strandat 3100.645 kb on + strandat 3100.679 kb on + strandat 3100.710 kb on + strandat 3100.710 kb on + strandat 3100.710 kb on + strandat 3100.710 kb on + strandat 3100.786 kb on + strandat 3100.798 kb on + strandat 3100.889 kb on + strandat 3100.899 kb on + strandat 3100.899 kb on + strandat 3100.901 kb on + strandat 3100.901 kb on + strandat 3100.901 kb on + strandat 3100.901 kb on + strandat 3100.901 kb on + strandat 3100.903 kb on + strandat 3100.903 kb on + strandat 3101.019 kb on + strandat 3101.019 kb on + strandat 3101.019 kb on + strandat 3101.086 kb on + strand, within galFat 3101.182 kb on + strand, within galFat 3101.315 kb on + strand, within galFat 3101.315 kb on + strand, within galFat 3101.676 kb on + strand, within galFat 3101.776 kb on + strandat 3101.776 kb on + strandat 3101.778 kb on + strandat 3101.778 kb on + strandat 3101.778 kb on + strandat 3102.660 kb on + strand, within NOLOHH_15740

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas69
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3,099,977 + NOLOHH_15730 0.24 -2.3
3,100,042 + NOLOHH_15730 0.31 -3.9
3,100,051 + NOLOHH_15730 0.32 -2.3
3,100,138 + NOLOHH_15730 0.41 -3.2
3,100,138 + NOLOHH_15730 0.41 -0.2
3,100,138 + NOLOHH_15730 0.41 -0.7
3,100,172 + NOLOHH_15730 0.44 -1.2
3,100,253 + NOLOHH_15730 0.52 -1.7
3,100,253 + NOLOHH_15730 0.52 -2.2
3,100,255 + NOLOHH_15730 0.52 -1.5
3,100,288 + NOLOHH_15730 0.56 +0.8
3,100,288 + NOLOHH_15730 0.56 +0.8
3,100,313 + NOLOHH_15730 0.58 -0.7
3,100,313 + NOLOHH_15730 0.58 -0.7
3,100,313 + NOLOHH_15730 0.58 -0.2
3,100,313 + NOLOHH_15730 0.58 -2.6
3,100,313 + NOLOHH_15730 0.58 -1.7
3,100,315 + NOLOHH_15730 0.58 -2.5
3,100,315 + NOLOHH_15730 0.58 -0.2
3,100,328 + NOLOHH_15730 0.60 -3.8
3,100,358 + NOLOHH_15730 0.63 -0.7
3,100,396 + NOLOHH_15730 0.66 -1.2
3,100,477 + NOLOHH_15730 0.75 -2.6
3,100,477 + NOLOHH_15730 0.75 +0.8
3,100,525 + NOLOHH_15730 0.79 -2.0
3,100,540 + NOLOHH_15730 0.81 -0.2
3,100,645 + -1.5
3,100,645 + -1.5
3,100,645 + +0.8
3,100,679 + -1.5
3,100,710 + -2.5
3,100,710 + -2.5
3,100,710 + -2.3
3,100,710 + +0.8
3,100,786 + -1.5
3,100,798 + +0.2
3,100,889 + +0.8
3,100,899 + +1.3
3,100,899 + +0.4
3,100,901 + +0.3
3,100,901 + +0.9
3,100,901 + -0.4
3,100,901 + +1.0
3,100,901 + +0.8
3,100,903 + -2.7
3,100,903 + +1.1
3,101,019 + +1.8
3,101,019 + -1.2
3,101,019 + +1.4
3,101,086 + galF NOLOHH_15735 0.13 -1.5
3,101,182 + galF NOLOHH_15735 0.23 -0.9
3,101,315 + galF NOLOHH_15735 0.38 -1.3
3,101,315 + galF NOLOHH_15735 0.38 -0.5
3,101,676 + galF NOLOHH_15735 0.79 -1.6
3,101,776 + -2.2
3,101,776 + -1.2
3,101,778 + +1.8
3,101,778 + +1.3
3,101,778 + +0.1
3,102,660 + NOLOHH_15740 0.70 +0.8

Or see this region's nucleotide sequence