Experiment: Bas69
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt NOLOHH_12775 and NOLOHH_12780 are separated by 73 nucleotides NOLOHH_12780 and NOLOHH_12785 are separated by 38 nucleotides NOLOHH_12785 and smpB are separated by 742 nucleotides
NOLOHH_12775: NOLOHH_12775 - Response-reg-2 domain-containing protein, at 2,478,355 to 2,480,103
_12775
NOLOHH_12780: NOLOHH_12780 - hypothetical protein, at 2,480,177 to 2,480,593
_12780
NOLOHH_12785: NOLOHH_12785 - integrase, at 2,480,632 to 2,481,861
_12785
NOLOHH_12795: smpB - SsrA-binding protein SmpB, at 2,482,604 to 2,483,086
smpB
Position (kb)
2480
2481
2482 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2479.659 kb on - strand, within NOLOHH_12775 at 2479.807 kb on - strand, within NOLOHH_12775 at 2479.885 kb on - strand, within NOLOHH_12775 at 2480.058 kb on + strand at 2480.615 kb on - strand at 2480.633 kb on + strand at 2480.669 kb on + strand at 2480.823 kb on + strand, within NOLOHH_12785 at 2480.823 kb on + strand, within NOLOHH_12785 at 2480.843 kb on - strand, within NOLOHH_12785 at 2480.874 kb on + strand, within NOLOHH_12785 at 2480.875 kb on - strand, within NOLOHH_12785 at 2480.902 kb on - strand, within NOLOHH_12785 at 2480.908 kb on - strand, within NOLOHH_12785 at 2480.966 kb on - strand, within NOLOHH_12785 at 2481.064 kb on - strand, within NOLOHH_12785 at 2481.138 kb on + strand, within NOLOHH_12785 at 2481.138 kb on + strand, within NOLOHH_12785 at 2481.138 kb on + strand, within NOLOHH_12785 at 2481.138 kb on + strand, within NOLOHH_12785 at 2481.139 kb on - strand, within NOLOHH_12785 at 2481.139 kb on - strand, within NOLOHH_12785 at 2481.139 kb on - strand, within NOLOHH_12785 at 2481.217 kb on - strand, within NOLOHH_12785 at 2481.217 kb on - strand, within NOLOHH_12785 at 2481.235 kb on - strand, within NOLOHH_12785 at 2481.288 kb on + strand, within NOLOHH_12785 at 2481.288 kb on + strand, within NOLOHH_12785 at 2481.335 kb on - strand, within NOLOHH_12785 at 2481.363 kb on + strand, within NOLOHH_12785 at 2481.483 kb on + strand, within NOLOHH_12785 at 2481.497 kb on - strand, within NOLOHH_12785 at 2481.546 kb on + strand, within NOLOHH_12785 at 2481.620 kb on + strand, within NOLOHH_12785 at 2481.620 kb on + strand, within NOLOHH_12785 at 2481.631 kb on + strand, within NOLOHH_12785 at 2481.632 kb on - strand, within NOLOHH_12785 at 2481.632 kb on - strand, within NOLOHH_12785 at 2481.632 kb on - strand, within NOLOHH_12785 at 2481.665 kb on + strand, within NOLOHH_12785 at 2481.666 kb on - strand, within NOLOHH_12785 at 2481.722 kb on + strand, within NOLOHH_12785 at 2481.763 kb on + strand at 2481.915 kb on + strand at 2481.922 kb on + strand at 2482.082 kb on - strand at 2482.082 kb on - strand at 2482.082 kb on - strand at 2482.090 kb on - strand at 2482.258 kb on - strand at 2482.270 kb on - strand at 2482.403 kb on - strand at 2482.535 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas69 remove 2,479,659 - NOLOHH_12775 0.75 +0.8 2,479,807 - NOLOHH_12775 0.83 -0.2 2,479,885 - NOLOHH_12775 0.87 +0.8 2,480,058 + -1.2 2,480,615 - +1.3 2,480,633 + +0.8 2,480,669 + -0.8 2,480,823 + NOLOHH_12785 0.16 +0.1 2,480,823 + NOLOHH_12785 0.16 +1.9 2,480,843 - NOLOHH_12785 0.17 -1.8 2,480,874 + NOLOHH_12785 0.20 +0.7 2,480,875 - NOLOHH_12785 0.20 +1.0 2,480,902 - NOLOHH_12785 0.22 -0.8 2,480,908 - NOLOHH_12785 0.22 -1.5 2,480,966 - NOLOHH_12785 0.27 +2.6 2,481,064 - NOLOHH_12785 0.35 +1.0 2,481,138 + NOLOHH_12785 0.41 -0.8 2,481,138 + NOLOHH_12785 0.41 -0.9 2,481,138 + NOLOHH_12785 0.41 -0.2 2,481,138 + NOLOHH_12785 0.41 +0.8 2,481,139 - NOLOHH_12785 0.41 -2.6 2,481,139 - NOLOHH_12785 0.41 -2.0 2,481,139 - NOLOHH_12785 0.41 +0.5 2,481,217 - NOLOHH_12785 0.48 -0.8 2,481,217 - NOLOHH_12785 0.48 +0.8 2,481,235 - NOLOHH_12785 0.49 -0.1 2,481,288 + NOLOHH_12785 0.53 -0.3 2,481,288 + NOLOHH_12785 0.53 +0.6 2,481,335 - NOLOHH_12785 0.57 +1.2 2,481,363 + NOLOHH_12785 0.59 -0.2 2,481,483 + NOLOHH_12785 0.69 -1.5 2,481,497 - NOLOHH_12785 0.70 +0.8 2,481,546 + NOLOHH_12785 0.74 -1.3 2,481,620 + NOLOHH_12785 0.80 +0.2 2,481,620 + NOLOHH_12785 0.80 +2.3 2,481,631 + NOLOHH_12785 0.81 -1.5 2,481,632 - NOLOHH_12785 0.81 +0.1 2,481,632 - NOLOHH_12785 0.81 -1.8 2,481,632 - NOLOHH_12785 0.81 +0.2 2,481,665 + NOLOHH_12785 0.84 +0.8 2,481,666 - NOLOHH_12785 0.84 -0.4 2,481,722 + NOLOHH_12785 0.89 +1.1 2,481,763 + +0.1 2,481,915 + +0.1 2,481,922 + +0.8 2,482,082 - -0.2 2,482,082 - +0.8 2,482,082 - +0.1 2,482,090 - -2.0 2,482,258 - -0.8 2,482,270 - -0.5 2,482,403 - +1.5 2,482,535 + -1.5
Or see this region's nucleotide sequence