Experiment: Bas69
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt rfaH and tatD overlap by 4 nucleotides tatD and tatC are separated by 41 nucleotides tatC and tatB are separated by 2 nucleotides tatB and tatA are separated by 3 nucleotides tatA and ubiB are separated by 78 nucleotides
NOLOHH_06395: rfaH - transcription/translation regulatory transformer protein RfaH, at 1,206,009 to 1,206,497
rfaH
NOLOHH_06400: tatD - 3'-5' ssDNA/RNA exonuclease TatD, at 1,206,494 to 1,207,276
tatD
NOLOHH_06405: tatC - Sec-independent protein translocase subunit TatC, at 1,207,318 to 1,208,094
tatC
NOLOHH_06410: tatB - Sec-independent protein translocase protein TatB, at 1,208,097 to 1,208,612
tatB
NOLOHH_06415: tatA - Sec-independent protein translocase subunit TatA, at 1,208,616 to 1,208,885
tatA
NOLOHH_06420: ubiB - ubiquinone biosynthesis regulatory protein kinase UbiB, at 1,208,964 to 1,210,604
ubiB
Position (kb) 1207
1208
1209 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 1206.350 kb on + strand, within rfaH at 1206.350 kb on + strand, within rfaH at 1206.350 kb on + strand, within rfaH at 1206.351 kb on - strand, within rfaH at 1206.351 kb on - strand, within rfaH at 1206.360 kb on - strand, within rfaH at 1206.430 kb on + strand, within rfaH at 1206.431 kb on - strand, within rfaH at 1206.431 kb on - strand, within rfaH at 1206.431 kb on - strand, within rfaH at 1206.438 kb on - strand, within rfaH at 1206.438 kb on - strand, within rfaH at 1206.443 kb on + strand, within rfaH at 1206.443 kb on + strand, within rfaH at 1206.443 kb on + strand, within rfaH at 1206.443 kb on + strand, within rfaH at 1206.444 kb on - strand, within rfaH at 1206.444 kb on - strand, within rfaH at 1206.444 kb on - strand, within rfaH at 1206.444 kb on - strand, within rfaH at 1206.446 kb on + strand, within rfaH at 1206.496 kb on - strand at 1206.580 kb on + strand, within tatD at 1206.580 kb on + strand, within tatD at 1206.580 kb on + strand, within tatD at 1206.581 kb on - strand, within tatD at 1206.581 kb on - strand, within tatD at 1206.592 kb on + strand, within tatD at 1206.768 kb on + strand, within tatD at 1206.769 kb on - strand, within tatD at 1206.769 kb on - strand, within tatD at 1206.901 kb on + strand, within tatD at 1206.901 kb on + strand, within tatD at 1206.902 kb on - strand, within tatD at 1206.902 kb on - strand, within tatD at 1206.902 kb on - strand, within tatD at 1206.902 kb on - strand, within tatD at 1206.905 kb on + strand, within tatD at 1206.936 kb on - strand, within tatD at 1206.936 kb on - strand, within tatD at 1206.936 kb on - strand, within tatD at 1207.094 kb on + strand, within tatD at 1207.094 kb on + strand, within tatD at 1207.123 kb on - strand, within tatD at 1207.189 kb on + strand, within tatD at 1207.281 kb on + strand at 1207.281 kb on + strand at 1207.282 kb on - strand at 1207.282 kb on - strand at 1207.282 kb on - strand at 1207.282 kb on - strand at 1207.288 kb on + strand at 1207.289 kb on - strand at 1207.320 kb on - strand at 1207.380 kb on + strand at 1207.388 kb on + strand at 1207.388 kb on + strand at 1207.388 kb on + strand at 1207.388 kb on + strand at 1207.388 kb on + strand at 1207.427 kb on + strand, within tatC at 1207.427 kb on + strand, within tatC at 1207.428 kb on - strand, within tatC at 1207.428 kb on - strand, within tatC at 1207.428 kb on - strand, within tatC at 1207.511 kb on + strand, within tatC at 1207.512 kb on - strand, within tatC at 1207.512 kb on - strand, within tatC at 1207.528 kb on + strand, within tatC at 1207.528 kb on + strand, within tatC at 1207.545 kb on + strand, within tatC at 1207.546 kb on - strand, within tatC at 1207.546 kb on - strand, within tatC at 1207.630 kb on + strand, within tatC at 1207.631 kb on - strand, within tatC at 1207.631 kb on - strand, within tatC at 1207.631 kb on - strand, within tatC at 1207.631 kb on - strand, within tatC at 1207.634 kb on + strand, within tatC at 1207.634 kb on + strand, within tatC at 1207.634 kb on + strand, within tatC at 1207.634 kb on + strand, within tatC at 1207.635 kb on - strand, within tatC at 1207.739 kb on + strand, within tatC at 1207.740 kb on - strand, within tatC at 1207.740 kb on - strand, within tatC at 1207.794 kb on + strand, within tatC at 1207.794 kb on + strand, within tatC at 1207.794 kb on + strand, within tatC at 1207.794 kb on + strand, within tatC at 1207.794 kb on + strand, within tatC at 1207.795 kb on - strand, within tatC at 1207.795 kb on - strand, within tatC at 1207.796 kb on + strand, within tatC at 1207.797 kb on - strand, within tatC at 1207.797 kb on - strand, within tatC at 1207.812 kb on + strand, within tatC at 1207.813 kb on - strand, within tatC at 1207.866 kb on + strand, within tatC at 1207.866 kb on + strand, within tatC at 1207.970 kb on + strand, within tatC at 1207.970 kb on + strand, within tatC at 1207.970 kb on + strand, within tatC at 1207.970 kb on + strand, within tatC at 1207.970 kb on + strand, within tatC at 1207.970 kb on + strand, within tatC at 1207.970 kb on + strand, within tatC at 1207.970 kb on + strand, within tatC at 1207.971 kb on - strand, within tatC at 1207.971 kb on - strand, within tatC at 1207.971 kb on - strand, within tatC at 1207.971 kb on - strand, within tatC at 1207.971 kb on - strand, within tatC at 1207.971 kb on - strand, within tatC at 1207.971 kb on - strand, within tatC at 1208.006 kb on - strand, within tatC at 1208.044 kb on - strand at 1208.044 kb on - strand at 1208.079 kb on + strand at 1208.079 kb on + strand at 1208.080 kb on - strand at 1208.080 kb on - strand at 1208.087 kb on - strand at 1208.098 kb on + strand at 1208.099 kb on - strand at 1208.106 kb on - strand at 1208.163 kb on + strand, within tatB at 1208.258 kb on + strand, within tatB at 1208.258 kb on + strand, within tatB at 1208.258 kb on + strand, within tatB at 1208.259 kb on - strand, within tatB at 1208.259 kb on - strand, within tatB at 1208.326 kb on + strand, within tatB at 1208.326 kb on + strand, within tatB at 1208.359 kb on - strand, within tatB at 1208.359 kb on - strand, within tatB at 1208.359 kb on - strand, within tatB at 1208.452 kb on - strand, within tatB at 1208.584 kb on - strand at 1208.618 kb on - strand at 1208.835 kb on + strand, within tatA at 1208.836 kb on - strand, within tatA at 1208.859 kb on + strand at 1208.860 kb on - strand at 1208.860 kb on - strand at 1208.860 kb on - strand at 1208.860 kb on - strand at 1208.860 kb on - strand at 1208.870 kb on + strand at 1208.870 kb on + strand at 1208.870 kb on + strand at 1208.871 kb on - strand at 1208.871 kb on - strand at 1208.885 kb on + strand at 1208.885 kb on + strand at 1208.885 kb on + strand at 1208.885 kb on + strand at 1208.885 kb on + strand at 1208.885 kb on + strand at 1208.885 kb on + strand at 1208.886 kb on - strand at 1208.886 kb on - strand at 1208.886 kb on - strand at 1208.886 kb on - strand at 1208.886 kb on - strand at 1208.886 kb on - strand at 1208.886 kb on - strand at 1208.886 kb on - strand at 1208.902 kb on + strand at 1208.902 kb on + strand at 1208.903 kb on - strand at 1208.903 kb on - strand at 1208.928 kb on + strand at 1208.930 kb on + strand at 1208.930 kb on + strand at 1208.931 kb on - strand at 1208.931 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas69 remove 1,206,350 + rfaH NOLOHH_06395 0.70 -3.2 1,206,350 + rfaH NOLOHH_06395 0.70 -0.9 1,206,350 + rfaH NOLOHH_06395 0.70 +1.1 1,206,351 - rfaH NOLOHH_06395 0.70 -0.9 1,206,351 - rfaH NOLOHH_06395 0.70 -0.9 1,206,360 - rfaH NOLOHH_06395 0.72 -0.5 1,206,430 + rfaH NOLOHH_06395 0.86 -3.2 1,206,431 - rfaH NOLOHH_06395 0.86 -0.9 1,206,431 - rfaH NOLOHH_06395 0.86 -1.2 1,206,431 - rfaH NOLOHH_06395 0.86 -1.5 1,206,438 - rfaH NOLOHH_06395 0.88 +2.9 1,206,438 - rfaH NOLOHH_06395 0.88 +4.0 1,206,443 + rfaH NOLOHH_06395 0.89 +2.6 1,206,443 + rfaH NOLOHH_06395 0.89 +1.3 1,206,443 + rfaH NOLOHH_06395 0.89 +1.6 1,206,443 + rfaH NOLOHH_06395 0.89 +4.3 1,206,444 - rfaH NOLOHH_06395 0.89 -0.2 1,206,444 - rfaH NOLOHH_06395 0.89 -0.5 1,206,444 - rfaH NOLOHH_06395 0.89 -0.9 1,206,444 - rfaH NOLOHH_06395 0.89 +1.1 1,206,446 + rfaH NOLOHH_06395 0.89 +2.6 1,206,496 - -1.5 1,206,580 + tatD NOLOHH_06400 0.11 -0.5 1,206,580 + tatD NOLOHH_06400 0.11 +0.5 1,206,580 + tatD NOLOHH_06400 0.11 -1.0 1,206,581 - tatD NOLOHH_06400 0.11 +1.1 1,206,581 - tatD NOLOHH_06400 0.11 +0.3 1,206,592 + tatD NOLOHH_06400 0.13 +0.7 1,206,768 + tatD NOLOHH_06400 0.35 +0.1 1,206,769 - tatD NOLOHH_06400 0.35 -0.0 1,206,769 - tatD NOLOHH_06400 0.35 +0.2 1,206,901 + tatD NOLOHH_06400 0.52 -0.4 1,206,901 + tatD NOLOHH_06400 0.52 -1.2 1,206,902 - tatD NOLOHH_06400 0.52 -0.5 1,206,902 - tatD NOLOHH_06400 0.52 +1.2 1,206,902 - tatD NOLOHH_06400 0.52 -1.4 1,206,902 - tatD NOLOHH_06400 0.52 +1.4 1,206,905 + tatD NOLOHH_06400 0.52 +0.8 1,206,936 - tatD NOLOHH_06400 0.56 -0.1 1,206,936 - tatD NOLOHH_06400 0.56 +1.8 1,206,936 - tatD NOLOHH_06400 0.56 -2.5 1,207,094 + tatD NOLOHH_06400 0.77 +0.8 1,207,094 + tatD NOLOHH_06400 0.77 -0.2 1,207,123 - tatD NOLOHH_06400 0.80 -0.0 1,207,189 + tatD NOLOHH_06400 0.89 +1.3 1,207,281 + -1.7 1,207,281 + -1.2 1,207,282 - +0.8 1,207,282 - +0.5 1,207,282 - +1.5 1,207,282 - -0.9 1,207,288 + +0.8 1,207,289 - -2.1 1,207,320 - +0.9 1,207,380 + -0.5 1,207,388 + +0.4 1,207,388 + +0.3 1,207,388 + +0.4 1,207,388 + +0.1 1,207,388 + +0.1 1,207,427 + tatC NOLOHH_06405 0.14 -1.2 1,207,427 + tatC NOLOHH_06405 0.14 +0.1 1,207,428 - tatC NOLOHH_06405 0.14 -0.9 1,207,428 - tatC NOLOHH_06405 0.14 -2.6 1,207,428 - tatC NOLOHH_06405 0.14 -0.9 1,207,511 + tatC NOLOHH_06405 0.25 -0.9 1,207,512 - tatC NOLOHH_06405 0.25 -2.6 1,207,512 - tatC NOLOHH_06405 0.25 -1.7 1,207,528 + tatC NOLOHH_06405 0.27 +1.1 1,207,528 + tatC NOLOHH_06405 0.27 -1.5 1,207,545 + tatC NOLOHH_06405 0.29 -3.1 1,207,546 - tatC NOLOHH_06405 0.29 -0.5 1,207,546 - tatC NOLOHH_06405 0.29 -2.4 1,207,630 + tatC NOLOHH_06405 0.40 -1.7 1,207,631 - tatC NOLOHH_06405 0.40 -3.2 1,207,631 - tatC NOLOHH_06405 0.40 -2.5 1,207,631 - tatC NOLOHH_06405 0.40 -1.9 1,207,631 - tatC NOLOHH_06405 0.40 -3.0 1,207,634 + tatC NOLOHH_06405 0.41 -1.2 1,207,634 + tatC NOLOHH_06405 0.41 -1.9 1,207,634 + tatC NOLOHH_06405 0.41 -1.4 1,207,634 + tatC NOLOHH_06405 0.41 -2.2 1,207,635 - tatC NOLOHH_06405 0.41 -1.2 1,207,739 + tatC NOLOHH_06405 0.54 -1.9 1,207,740 - tatC NOLOHH_06405 0.54 -1.9 1,207,740 - tatC NOLOHH_06405 0.54 -0.5 1,207,794 + tatC NOLOHH_06405 0.61 -2.7 1,207,794 + tatC NOLOHH_06405 0.61 -1.1 1,207,794 + tatC NOLOHH_06405 0.61 -0.9 1,207,794 + tatC NOLOHH_06405 0.61 -1.2 1,207,794 + tatC NOLOHH_06405 0.61 -1.7 1,207,795 - tatC NOLOHH_06405 0.61 -2.2 1,207,795 - tatC NOLOHH_06405 0.61 -1.9 1,207,796 + tatC NOLOHH_06405 0.62 -1.7 1,207,797 - tatC NOLOHH_06405 0.62 -2.7 1,207,797 - tatC NOLOHH_06405 0.62 -3.5 1,207,812 + tatC NOLOHH_06405 0.64 -2.5 1,207,813 - tatC NOLOHH_06405 0.64 -1.5 1,207,866 + tatC NOLOHH_06405 0.71 +1.1 1,207,866 + tatC NOLOHH_06405 0.71 -3.6 1,207,970 + tatC NOLOHH_06405 0.84 +0.1 1,207,970 + tatC NOLOHH_06405 0.84 -3.9 1,207,970 + tatC NOLOHH_06405 0.84 -1.2 1,207,970 + tatC NOLOHH_06405 0.84 -1.5 1,207,970 + tatC NOLOHH_06405 0.84 -2.1 1,207,970 + tatC NOLOHH_06405 0.84 -2.5 1,207,970 + tatC NOLOHH_06405 0.84 -2.4 1,207,970 + tatC NOLOHH_06405 0.84 -2.4 1,207,971 - tatC NOLOHH_06405 0.84 -0.5 1,207,971 - tatC NOLOHH_06405 0.84 +0.1 1,207,971 - tatC NOLOHH_06405 0.84 -2.4 1,207,971 - tatC NOLOHH_06405 0.84 -2.2 1,207,971 - tatC NOLOHH_06405 0.84 -2.7 1,207,971 - tatC NOLOHH_06405 0.84 -1.2 1,207,971 - tatC NOLOHH_06405 0.84 -2.4 1,208,006 - tatC NOLOHH_06405 0.89 -1.9 1,208,044 - -1.7 1,208,044 - -2.8 1,208,079 + -2.4 1,208,079 + -1.8 1,208,080 - -2.4 1,208,080 - -3.2 1,208,087 - -3.4 1,208,098 + -0.9 1,208,099 - -1.5 1,208,106 - -1.2 1,208,163 + tatB NOLOHH_06410 0.13 -1.2 1,208,258 + tatB NOLOHH_06410 0.31 -3.0 1,208,258 + tatB NOLOHH_06410 0.31 -1.7 1,208,258 + tatB NOLOHH_06410 0.31 -0.5 1,208,259 - tatB NOLOHH_06410 0.31 +0.1 1,208,259 - tatB NOLOHH_06410 0.31 -0.3 1,208,326 + tatB NOLOHH_06410 0.44 -1.9 1,208,326 + tatB NOLOHH_06410 0.44 -0.5 1,208,359 - tatB NOLOHH_06410 0.51 -2.1 1,208,359 - tatB NOLOHH_06410 0.51 -2.1 1,208,359 - tatB NOLOHH_06410 0.51 -2.4 1,208,452 - tatB NOLOHH_06410 0.69 -2.7 1,208,584 - -3.1 1,208,618 - +0.1 1,208,835 + tatA NOLOHH_06415 0.81 -1.9 1,208,836 - tatA NOLOHH_06415 0.81 -1.7 1,208,859 + -1.7 1,208,860 - -0.9 1,208,860 - +0.1 1,208,860 - -2.1 1,208,860 - -3.1 1,208,860 - -1.3 1,208,870 + -0.5 1,208,870 + +0.1 1,208,870 + -2.5 1,208,871 - -4.1 1,208,871 - -4.4 1,208,885 + +1.1 1,208,885 + -1.5 1,208,885 + -1.9 1,208,885 + -0.5 1,208,885 + -2.7 1,208,885 + -0.5 1,208,885 + -0.7 1,208,886 - -1.7 1,208,886 - -2.6 1,208,886 - -1.5 1,208,886 - -0.9 1,208,886 - -1.9 1,208,886 - -3.0 1,208,886 - -1.7 1,208,886 - -0.5 1,208,902 + -0.9 1,208,902 + -2.6 1,208,903 - -2.4 1,208,903 - -2.4 1,208,928 + -2.4 1,208,930 + +0.9 1,208,930 + -3.3 1,208,931 - +1.9 1,208,931 - +1.1
Or see this region's nucleotide sequence