Strain Fitness in Escherichia coli ECOR27 around NOLOHH_05880

Experiment: Bas69

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntftsN and hslV are separated by 92 nucleotideshslV and hslU are separated by 9 nucleotides NOLOHH_05875: ftsN - cell division protein FtsN, at 1,105,483 to 1,106,337 ftsN NOLOHH_05880: hslV - ATP-dependent protease subunit HslV, at 1,106,430 to 1,106,960 hslV NOLOHH_05885: hslU - HslU--HslV peptidase ATPase subunit, at 1,106,970 to 1,108,301 hslU Position (kb) 1106 1107Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1105.929 kb on + strand, within ftsNat 1105.929 kb on + strand, within ftsNat 1105.929 kb on + strand, within ftsNat 1105.971 kb on + strand, within ftsNat 1106.168 kb on + strand, within ftsNat 1106.304 kb on + strandat 1106.305 kb on - strandat 1106.360 kb on + strandat 1106.360 kb on + strandat 1106.360 kb on + strandat 1106.360 kb on + strandat 1106.360 kb on + strandat 1106.362 kb on + strandat 1106.362 kb on + strandat 1106.362 kb on + strandat 1106.400 kb on - strandat 1106.407 kb on - strandat 1106.438 kb on + strandat 1106.438 kb on + strandat 1106.439 kb on - strandat 1106.439 kb on - strandat 1106.439 kb on - strandat 1106.439 kb on - strandat 1106.439 kb on - strandat 1106.440 kb on + strandat 1106.440 kb on + strandat 1106.440 kb on + strandat 1106.440 kb on + strandat 1106.440 kb on + strandat 1106.441 kb on - strandat 1106.441 kb on - strandat 1106.744 kb on + strand, within hslVat 1106.744 kb on + strand, within hslVat 1106.915 kb on + strandat 1106.944 kb on + strandat 1106.944 kb on + strandat 1106.944 kb on + strandat 1106.959 kb on - strandat 1107.527 kb on + strand, within hslUat 1107.527 kb on + strand, within hslUat 1107.527 kb on + strand, within hslU

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas69
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1,105,929 + ftsN NOLOHH_05875 0.52 +0.8
1,105,929 + ftsN NOLOHH_05875 0.52 -1.6
1,105,929 + ftsN NOLOHH_05875 0.52 -2.2
1,105,971 + ftsN NOLOHH_05875 0.57 -0.2
1,106,168 + ftsN NOLOHH_05875 0.80 +0.5
1,106,304 + -3.2
1,106,305 - -1.8
1,106,360 + -1.8
1,106,360 + -2.0
1,106,360 + -0.1
1,106,360 + -0.3
1,106,360 + -0.1
1,106,362 + +0.5
1,106,362 + -1.3
1,106,362 + -1.7
1,106,400 - +1.0
1,106,407 - -1.3
1,106,438 + +0.0
1,106,438 + -1.5
1,106,439 - -0.5
1,106,439 - +0.0
1,106,439 - -1.3
1,106,439 - -0.5
1,106,439 - -1.0
1,106,440 + +0.0
1,106,440 + -2.7
1,106,440 + +1.0
1,106,440 + -1.8
1,106,440 + -1.3
1,106,441 - -1.0
1,106,441 - -1.0
1,106,744 + hslV NOLOHH_05880 0.59 -1.0
1,106,744 + hslV NOLOHH_05880 0.59 -1.3
1,106,915 + +0.5
1,106,944 + +3.6
1,106,944 + -2.0
1,106,944 + -2.1
1,106,959 - -0.5
1,107,527 + hslU NOLOHH_05885 0.42 -0.5
1,107,527 + hslU NOLOHH_05885 0.42 +0.5
1,107,527 + hslU NOLOHH_05885 0.42 +0.0

Or see this region's nucleotide sequence