Experiment: Bas69
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yjbM and zur are separated by 317 nucleotides zur and yjbJ are separated by 41 nucleotides yjbJ and dinF are separated by 115 nucleotides
NOLOHH_05200: yjbM - Uncharacterized protein YjbM, at 957,270 to 958,286
yjbM
NOLOHH_05205: zur - zinc uptake transcriptional repressor Zur, at 958,604 to 959,119
zur
NOLOHH_05210: yjbJ - UPF0337 protein YjbJ, at 959,161 to 959,370
yjbJ
NOLOHH_05215: dinF - MATE family efflux transporter DinF, at 959,486 to 960,811
dinF
Position (kb) 958
959
960 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 957.718 kb on - strand, within yjbM at 957.868 kb on - strand, within yjbM at 957.869 kb on + strand, within yjbM at 957.872 kb on + strand, within yjbM at 957.961 kb on + strand, within yjbM at 958.565 kb on - strand at 958.565 kb on - strand at 958.569 kb on + strand at 958.569 kb on + strand at 958.570 kb on - strand at 958.570 kb on - strand at 958.663 kb on + strand, within zur at 958.664 kb on - strand, within zur at 958.726 kb on + strand, within zur at 958.737 kb on - strand, within zur at 958.856 kb on + strand, within zur at 958.856 kb on + strand, within zur at 958.857 kb on - strand, within zur at 958.857 kb on - strand, within zur at 958.857 kb on - strand, within zur at 958.857 kb on - strand, within zur at 958.857 kb on - strand, within zur at 958.857 kb on - strand, within zur at 958.891 kb on + strand, within zur at 958.891 kb on + strand, within zur at 958.891 kb on + strand, within zur at 958.891 kb on + strand, within zur at 958.907 kb on - strand, within zur at 958.963 kb on + strand, within zur at 958.969 kb on + strand, within zur at 958.969 kb on + strand, within zur at 959.005 kb on + strand, within zur at 959.005 kb on + strand, within zur at 959.005 kb on + strand, within zur at 959.006 kb on - strand, within zur at 959.006 kb on - strand, within zur at 959.127 kb on + strand at 959.127 kb on + strand at 959.127 kb on + strand at 959.127 kb on + strand at 959.128 kb on - strand at 959.128 kb on - strand at 959.128 kb on - strand at 959.128 kb on - strand at 959.137 kb on + strand at 959.137 kb on + strand at 959.137 kb on + strand at 959.138 kb on - strand at 959.138 kb on - strand at 959.158 kb on + strand at 959.163 kb on - strand at 959.232 kb on - strand, within yjbJ at 959.268 kb on + strand, within yjbJ at 959.286 kb on + strand, within yjbJ at 959.287 kb on - strand, within yjbJ at 959.326 kb on - strand, within yjbJ at 959.332 kb on - strand, within yjbJ at 959.364 kb on + strand at 959.364 kb on + strand at 959.371 kb on - strand at 959.371 kb on - strand at 959.388 kb on + strand at 959.388 kb on + strand at 959.406 kb on - strand at 959.434 kb on + strand at 959.434 kb on + strand at 959.434 kb on + strand at 959.434 kb on + strand at 959.435 kb on - strand at 959.440 kb on + strand at 959.440 kb on + strand at 959.457 kb on + strand at 959.467 kb on + strand at 959.534 kb on - strand at 959.596 kb on + strand at 959.615 kb on - strand at 959.653 kb on + strand, within dinF at 959.653 kb on + strand, within dinF at 959.653 kb on + strand, within dinF at 959.659 kb on + strand, within dinF at 959.660 kb on - strand, within dinF at 959.687 kb on + strand, within dinF at 959.688 kb on - strand, within dinF at 959.688 kb on - strand, within dinF at 959.689 kb on + strand, within dinF at 959.689 kb on + strand, within dinF at 959.689 kb on + strand, within dinF at 959.690 kb on - strand, within dinF at 959.690 kb on - strand, within dinF at 959.690 kb on - strand, within dinF at 959.690 kb on - strand, within dinF at 959.709 kb on + strand, within dinF at 959.710 kb on - strand, within dinF at 959.749 kb on + strand, within dinF at 959.750 kb on - strand, within dinF at 959.755 kb on - strand, within dinF at 959.827 kb on - strand, within dinF at 959.849 kb on + strand, within dinF at 959.850 kb on - strand, within dinF at 959.850 kb on - strand, within dinF at 959.882 kb on + strand, within dinF at 959.883 kb on - strand, within dinF at 959.883 kb on - strand, within dinF at 959.883 kb on - strand, within dinF at 959.883 kb on - strand, within dinF at 959.883 kb on - strand, within dinF at 959.883 kb on - strand, within dinF at 959.916 kb on + strand, within dinF at 959.916 kb on + strand, within dinF at 959.916 kb on + strand, within dinF at 959.917 kb on - strand, within dinF at 959.917 kb on - strand, within dinF at 959.917 kb on - strand, within dinF at 959.917 kb on - strand, within dinF at 960.042 kb on - strand, within dinF at 960.091 kb on + strand, within dinF at 960.091 kb on + strand, within dinF
Per-strain Table
Position Strand Gene LocusTag Fraction Bas69 remove 957,718 - yjbM NOLOHH_05200 0.44 +0.4 957,868 - yjbM NOLOHH_05200 0.59 +0.3 957,869 + yjbM NOLOHH_05200 0.59 -0.8 957,872 + yjbM NOLOHH_05200 0.59 -0.3 957,961 + yjbM NOLOHH_05200 0.68 +1.0 958,565 - -0.2 958,565 - -1.5 958,569 + +0.0 958,569 + +2.6 958,570 - +0.2 958,570 - -2.9 958,663 + zur NOLOHH_05205 0.11 -0.6 958,664 - zur NOLOHH_05205 0.12 -0.6 958,726 + zur NOLOHH_05205 0.24 -1.0 958,737 - zur NOLOHH_05205 0.26 +0.7 958,856 + zur NOLOHH_05205 0.49 -2.3 958,856 + zur NOLOHH_05205 0.49 -1.5 958,857 - zur NOLOHH_05205 0.49 -2.2 958,857 - zur NOLOHH_05205 0.49 -1.0 958,857 - zur NOLOHH_05205 0.49 -1.8 958,857 - zur NOLOHH_05205 0.49 -1.2 958,857 - zur NOLOHH_05205 0.49 -1.5 958,857 - zur NOLOHH_05205 0.49 -1.6 958,891 + zur NOLOHH_05205 0.56 -0.7 958,891 + zur NOLOHH_05205 0.56 +0.5 958,891 + zur NOLOHH_05205 0.56 +1.0 958,891 + zur NOLOHH_05205 0.56 -2.8 958,907 - zur NOLOHH_05205 0.59 -1.0 958,963 + zur NOLOHH_05205 0.70 -2.2 958,969 + zur NOLOHH_05205 0.71 -0.4 958,969 + zur NOLOHH_05205 0.71 -0.8 959,005 + zur NOLOHH_05205 0.78 -2.9 959,005 + zur NOLOHH_05205 0.78 -2.4 959,005 + zur NOLOHH_05205 0.78 +0.6 959,006 - zur NOLOHH_05205 0.78 -0.3 959,006 - zur NOLOHH_05205 0.78 -2.8 959,127 + +2.1 959,127 + +0.1 959,127 + +0.9 959,127 + +0.4 959,128 - -0.7 959,128 - -1.0 959,128 - +0.4 959,128 - -0.6 959,137 + +0.6 959,137 + -1.3 959,137 + -1.6 959,138 - -2.9 959,138 - -2.5 959,158 + +1.0 959,163 - +0.4 959,232 - yjbJ NOLOHH_05210 0.34 -0.6 959,268 + yjbJ NOLOHH_05210 0.51 +0.8 959,286 + yjbJ NOLOHH_05210 0.60 +1.9 959,287 - yjbJ NOLOHH_05210 0.60 -1.2 959,326 - yjbJ NOLOHH_05210 0.79 +1.7 959,332 - yjbJ NOLOHH_05210 0.81 -0.5 959,364 + -0.6 959,364 + +1.6 959,371 - -1.8 959,371 - +1.2 959,388 + +2.4 959,388 + -1.3 959,406 - +0.6 959,434 + +1.3 959,434 + +0.6 959,434 + -0.6 959,434 + +0.0 959,435 - -1.3 959,440 + +0.5 959,440 + -0.8 959,457 + +2.3 959,467 + +1.6 959,534 - +0.0 959,596 + -1.3 959,615 - -1.8 959,653 + dinF NOLOHH_05215 0.13 +1.7 959,653 + dinF NOLOHH_05215 0.13 +0.4 959,653 + dinF NOLOHH_05215 0.13 +1.3 959,659 + dinF NOLOHH_05215 0.13 -1.5 959,660 - dinF NOLOHH_05215 0.13 -1.0 959,687 + dinF NOLOHH_05215 0.15 -1.4 959,688 - dinF NOLOHH_05215 0.15 +1.6 959,688 - dinF NOLOHH_05215 0.15 -1.8 959,689 + dinF NOLOHH_05215 0.15 -1.2 959,689 + dinF NOLOHH_05215 0.15 +0.9 959,689 + dinF NOLOHH_05215 0.15 +1.3 959,690 - dinF NOLOHH_05215 0.15 +0.2 959,690 - dinF NOLOHH_05215 0.15 +1.2 959,690 - dinF NOLOHH_05215 0.15 -0.3 959,690 - dinF NOLOHH_05215 0.15 -0.1 959,709 + dinF NOLOHH_05215 0.17 -1.8 959,710 - dinF NOLOHH_05215 0.17 -0.7 959,749 + dinF NOLOHH_05215 0.20 -0.9 959,750 - dinF NOLOHH_05215 0.20 -0.1 959,755 - dinF NOLOHH_05215 0.20 -1.2 959,827 - dinF NOLOHH_05215 0.26 +0.4 959,849 + dinF NOLOHH_05215 0.27 +0.7 959,850 - dinF NOLOHH_05215 0.27 +0.0 959,850 - dinF NOLOHH_05215 0.27 +1.0 959,882 + dinF NOLOHH_05215 0.30 +1.3 959,883 - dinF NOLOHH_05215 0.30 -3.4 959,883 - dinF NOLOHH_05215 0.30 -1.0 959,883 - dinF NOLOHH_05215 0.30 +1.1 959,883 - dinF NOLOHH_05215 0.30 -0.7 959,883 - dinF NOLOHH_05215 0.30 +0.3 959,883 - dinF NOLOHH_05215 0.30 -0.4 959,916 + dinF NOLOHH_05215 0.32 +0.2 959,916 + dinF NOLOHH_05215 0.32 +0.3 959,916 + dinF NOLOHH_05215 0.32 +0.3 959,917 - dinF NOLOHH_05215 0.33 -1.8 959,917 - dinF NOLOHH_05215 0.33 -0.2 959,917 - dinF NOLOHH_05215 0.33 +0.6 959,917 - dinF NOLOHH_05215 0.33 +1.0 960,042 - dinF NOLOHH_05215 0.42 -0.6 960,091 + dinF NOLOHH_05215 0.46 -1.5 960,091 + dinF NOLOHH_05215 0.46 -2.0
Or see this region's nucleotide sequence