Experiment: Bas69
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt tyrB and alr are separated by 252 nucleotides alr and dnaB are separated by 52 nucleotides
NOLOHH_05170: tyrB - aromatic amino acid transaminase, at 950,269 to 951,462
tyrB
NOLOHH_05175: alr - alanine racemase, at 951,715 to 952,794
alr
NOLOHH_05180: dnaB - replicative DNA helicase, at 952,847 to 954,262
dnaB
Position (kb) 951
952
953 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 950.783 kb on + strand, within tyrB at 950.841 kb on + strand, within tyrB at 950.940 kb on + strand, within tyrB at 950.954 kb on - strand, within tyrB at 950.954 kb on - strand, within tyrB at 950.982 kb on + strand, within tyrB at 950.983 kb on - strand, within tyrB at 950.983 kb on - strand, within tyrB at 951.011 kb on + strand, within tyrB at 951.021 kb on - strand, within tyrB at 951.025 kb on - strand, within tyrB at 951.025 kb on - strand, within tyrB at 951.110 kb on + strand, within tyrB at 951.246 kb on + strand, within tyrB at 951.262 kb on + strand, within tyrB at 951.263 kb on - strand, within tyrB at 951.353 kb on + strand at 951.353 kb on + strand at 951.354 kb on - strand at 951.356 kb on + strand at 951.357 kb on - strand at 951.371 kb on - strand at 951.371 kb on - strand at 951.403 kb on - strand at 951.403 kb on - strand at 951.420 kb on + strand at 951.496 kb on - strand at 951.557 kb on - strand at 951.585 kb on + strand at 951.585 kb on + strand at 951.585 kb on + strand at 951.585 kb on + strand at 951.585 kb on + strand at 951.585 kb on + strand at 951.586 kb on - strand at 951.586 kb on - strand at 951.586 kb on - strand at 951.586 kb on - strand at 951.586 kb on - strand at 951.610 kb on - strand at 951.611 kb on + strand at 951.612 kb on - strand at 951.612 kb on - strand at 951.612 kb on - strand at 951.703 kb on - strand at 951.705 kb on + strand at 951.725 kb on + strand at 951.726 kb on - strand at 951.726 kb on - strand at 951.802 kb on + strand at 951.823 kb on + strand, within alr at 951.823 kb on + strand, within alr at 951.865 kb on + strand, within alr at 951.865 kb on + strand, within alr at 951.865 kb on + strand, within alr at 951.865 kb on + strand, within alr at 951.865 kb on + strand, within alr at 951.865 kb on + strand, within alr at 951.865 kb on + strand, within alr at 951.883 kb on - strand, within alr at 952.053 kb on + strand, within alr at 952.054 kb on - strand, within alr at 952.084 kb on + strand, within alr at 952.257 kb on + strand, within alr at 952.260 kb on + strand, within alr at 952.261 kb on - strand, within alr at 952.261 kb on - strand, within alr at 952.400 kb on - strand, within alr at 952.417 kb on - strand, within alr at 952.570 kb on + strand, within alr at 952.571 kb on - strand, within alr at 952.682 kb on + strand, within alr at 952.829 kb on + strand at 952.830 kb on - strand at 952.849 kb on - strand at 952.875 kb on + strand at 952.875 kb on + strand at 952.875 kb on + strand at 952.875 kb on + strand at 952.875 kb on + strand at 952.876 kb on - strand at 952.876 kb on - strand at 952.876 kb on - strand at 952.876 kb on - strand at 952.876 kb on - strand at 952.876 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Bas69 remove 950,783 + tyrB NOLOHH_05170 0.43 -1.6 950,841 + tyrB NOLOHH_05170 0.48 -0.3 950,940 + tyrB NOLOHH_05170 0.56 +1.0 950,954 - tyrB NOLOHH_05170 0.57 +0.0 950,954 - tyrB NOLOHH_05170 0.57 -0.2 950,982 + tyrB NOLOHH_05170 0.60 -2.0 950,983 - tyrB NOLOHH_05170 0.60 +0.0 950,983 - tyrB NOLOHH_05170 0.60 +0.5 951,011 + tyrB NOLOHH_05170 0.62 -0.2 951,021 - tyrB NOLOHH_05170 0.63 -1.3 951,025 - tyrB NOLOHH_05170 0.63 +1.0 951,025 - tyrB NOLOHH_05170 0.63 +1.0 951,110 + tyrB NOLOHH_05170 0.70 +0.8 951,246 + tyrB NOLOHH_05170 0.82 +0.9 951,262 + tyrB NOLOHH_05170 0.83 +1.8 951,263 - tyrB NOLOHH_05170 0.83 +1.0 951,353 + +0.5 951,353 + -0.4 951,354 - -1.9 951,356 + +0.8 951,357 - -1.8 951,371 - -1.6 951,371 - +1.0 951,403 - +0.0 951,403 - +0.2 951,420 + +1.0 951,496 - +1.3 951,557 - +2.7 951,585 + +0.2 951,585 + -2.0 951,585 + +1.0 951,585 + -1.7 951,585 + +1.6 951,585 + +0.6 951,586 - +1.0 951,586 - -0.4 951,586 - -2.8 951,586 - -2.2 951,586 - +0.3 951,610 - +0.3 951,611 + -1.7 951,612 - -0.4 951,612 - -1.6 951,612 - +0.2 951,703 - -1.3 951,705 + +0.3 951,725 + +1.0 951,726 - -1.3 951,726 - +0.2 951,802 + +0.0 951,823 + alr NOLOHH_05175 0.10 -1.9 951,823 + alr NOLOHH_05175 0.10 +0.7 951,865 + alr NOLOHH_05175 0.14 -2.3 951,865 + alr NOLOHH_05175 0.14 +0.0 951,865 + alr NOLOHH_05175 0.14 -1.7 951,865 + alr NOLOHH_05175 0.14 -1.8 951,865 + alr NOLOHH_05175 0.14 -2.0 951,865 + alr NOLOHH_05175 0.14 -2.7 951,865 + alr NOLOHH_05175 0.14 +0.4 951,883 - alr NOLOHH_05175 0.16 -0.3 952,053 + alr NOLOHH_05175 0.31 -0.6 952,054 - alr NOLOHH_05175 0.31 -2.7 952,084 + alr NOLOHH_05175 0.34 -0.6 952,257 + alr NOLOHH_05175 0.50 -3.2 952,260 + alr NOLOHH_05175 0.50 -3.3 952,261 - alr NOLOHH_05175 0.51 -1.6 952,261 - alr NOLOHH_05175 0.51 -2.6 952,400 - alr NOLOHH_05175 0.63 -2.4 952,417 - alr NOLOHH_05175 0.65 -0.9 952,570 + alr NOLOHH_05175 0.79 +0.0 952,571 - alr NOLOHH_05175 0.79 -0.6 952,682 + alr NOLOHH_05175 0.90 -2.5 952,829 + -1.2 952,830 - +2.6 952,849 - -2.2 952,875 + +0.4 952,875 + +1.0 952,875 + -1.3 952,875 + +0.0 952,875 + +0.4 952,876 - +0.2 952,876 - -1.3 952,876 - +2.0 952,876 - -1.7 952,876 - +0.3 952,876 - -0.2
Or see this region's nucleotide sequence