Experiment: Bas69
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt NOLOHH_03335 and NOLOHH_03340 are separated by 12 nucleotides NOLOHH_03340 and NOLOHH_03345 are separated by 100 nucleotides NOLOHH_03345 and NOLOHH_03350 are separated by 124 nucleotides NOLOHH_03350 and nhaR are separated by 38 nucleotides
NOLOHH_03335: NOLOHH_03335 - Fimbrial protein, at 589,209 to 590,354
_03335
NOLOHH_03340: NOLOHH_03340 - fimbrial family protein, at 590,367 to 590,585
_03340
NOLOHH_03345: NOLOHH_03345 - hypothetical protein, at 590,686 to 590,775
_03345
NOLOHH_03350: NOLOHH_03350 - fimbrial family protein, at 590,900 to 591,325
_03350
NOLOHH_03355: nhaR - transcriptional activator NhaR, at 591,364 to 592,263
nhaR
Position (kb) 590
591 Strain fitness (log2 ratio) -2
-1
0
1
2 at 589.379 kb on - strand, within NOLOHH_03335 at 589.772 kb on - strand, within NOLOHH_03335 at 589.782 kb on + strand, within NOLOHH_03335 at 590.117 kb on + strand, within NOLOHH_03335 at 590.131 kb on + strand, within NOLOHH_03335 at 590.343 kb on - strand at 590.527 kb on + strand, within NOLOHH_03340 at 590.627 kb on - strand at 590.947 kb on - strand, within NOLOHH_03350 at 590.986 kb on + strand, within NOLOHH_03350 at 591.094 kb on - strand, within NOLOHH_03350 at 591.139 kb on - strand, within NOLOHH_03350 at 591.260 kb on + strand, within NOLOHH_03350 at 591.268 kb on + strand, within NOLOHH_03350 at 591.268 kb on + strand, within NOLOHH_03350 at 591.268 kb on + strand, within NOLOHH_03350 at 591.268 kb on + strand, within NOLOHH_03350 at 591.269 kb on - strand, within NOLOHH_03350 at 591.289 kb on - strand at 591.313 kb on + strand at 591.314 kb on - strand at 591.317 kb on + strand at 591.317 kb on + strand at 591.317 kb on + strand at 591.317 kb on + strand at 591.323 kb on + strand at 591.324 kb on - strand at 591.324 kb on - strand at 591.324 kb on - strand at 591.328 kb on + strand at 591.328 kb on + strand at 591.454 kb on - strand, within nhaR at 591.454 kb on - strand, within nhaR at 591.454 kb on - strand, within nhaR at 591.454 kb on - strand, within nhaR at 591.524 kb on + strand, within nhaR at 591.524 kb on + strand, within nhaR at 591.525 kb on - strand, within nhaR at 591.528 kb on + strand, within nhaR
Per-strain Table
Position Strand Gene LocusTag Fraction Bas69 remove 589,379 - NOLOHH_03335 0.15 -0.6 589,772 - NOLOHH_03335 0.49 +0.2 589,782 + NOLOHH_03335 0.50 +2.0 590,117 + NOLOHH_03335 0.79 +2.7 590,131 + NOLOHH_03335 0.80 -0.6 590,343 - -1.4 590,527 + NOLOHH_03340 0.73 -1.6 590,627 - -0.8 590,947 - NOLOHH_03350 0.11 +2.5 590,986 + NOLOHH_03350 0.20 -0.4 591,094 - NOLOHH_03350 0.46 -1.8 591,139 - NOLOHH_03350 0.56 +1.0 591,260 + NOLOHH_03350 0.85 -2.2 591,268 + NOLOHH_03350 0.86 +0.7 591,268 + NOLOHH_03350 0.86 -0.0 591,268 + NOLOHH_03350 0.86 +1.0 591,268 + NOLOHH_03350 0.86 +0.7 591,269 - NOLOHH_03350 0.87 -1.4 591,289 - +0.2 591,313 + +1.0 591,314 - +0.2 591,317 + +0.2 591,317 + +0.7 591,317 + -1.0 591,317 + +0.8 591,323 + -0.6 591,324 - -0.8 591,324 - +0.6 591,324 - +1.0 591,328 + +0.7 591,328 + -1.4 591,454 - nhaR NOLOHH_03355 0.10 +0.4 591,454 - nhaR NOLOHH_03355 0.10 -0.3 591,454 - nhaR NOLOHH_03355 0.10 +0.4 591,454 - nhaR NOLOHH_03355 0.10 +1.0 591,524 + nhaR NOLOHH_03355 0.18 +1.0 591,524 + nhaR NOLOHH_03355 0.18 -1.4 591,525 - nhaR NOLOHH_03355 0.18 -0.9 591,528 + nhaR NOLOHH_03355 0.18 +0.4
Or see this region's nucleotide sequence