Strain Fitness in Escherichia coli ECOR27 around NOLOHH_02510

Experiment: Bas69

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntlpxD and skp are separated by 3 nucleotidesskp and bamA are separated by 121 nucleotides NOLOHH_02505: lpxD - UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase, at 408,393 to 409,418 lpxD NOLOHH_02510: skp - molecular chaperone Skp, at 409,422 to 409,907 skp NOLOHH_02515: bamA - outer membrane protein assembly factor BamA, at 410,029 to 412,461 bamA Position (kb) 409 410Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 409.731 kb on - strand, within skpat 409.779 kb on - strand, within skpat 409.873 kb on - strandat 409.891 kb on - strandat 409.891 kb on - strandat 409.894 kb on - strandat 409.894 kb on - strandat 409.920 kb on - strandat 409.920 kb on - strandat 409.972 kb on - strandat 409.985 kb on - strandat 410.008 kb on - strandat 410.008 kb on - strandat 410.008 kb on - strandat 410.008 kb on - strandat 410.031 kb on - strandat 410.031 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bas69
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409,731 - skp NOLOHH_02510 0.64 +0.9
409,779 - skp NOLOHH_02510 0.73 -2.8
409,873 - -0.7
409,891 - -1.9
409,891 - -1.9
409,894 - -2.8
409,894 - -0.7
409,920 - -0.3
409,920 - +1.9
409,972 - -1.4
409,985 - +0.9
410,008 - +0.5
410,008 - -0.4
410,008 - -0.6
410,008 - -1.9
410,031 - -0.1
410,031 - -0.9

Or see this region's nucleotide sequence