Experiment: Bas69
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yafL and dinJ are separated by 185 nucleotides dinJ and yafQ are separated by 2 nucleotides yafQ and dpaA are separated by 155 nucleotides
NOLOHH_02120: yafL - putative endopeptidase YafL, at 330,976 to 331,749
yafL
NOLOHH_02125: dinJ - type II toxin-antitoxin system antitoxin DinJ, at 331,935 to 332,195
dinJ
NOLOHH_02130: yafQ - type II toxin-antitoxin system mRNA interferase toxin YafQ, at 332,198 to 332,476
yafQ
NOLOHH_02135: dpaA - peptidoglycan meso-diaminopimelic acid protein amidase, at 332,632 to 333,372
dpaA
Position (kb) 331
332
333 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 331.109 kb on + strand, within yafL at 331.109 kb on + strand, within yafL at 331.109 kb on + strand, within yafL at 331.110 kb on - strand, within yafL at 331.110 kb on - strand, within yafL at 331.110 kb on - strand, within yafL at 331.110 kb on - strand, within yafL at 331.110 kb on - strand, within yafL at 331.110 kb on - strand, within yafL at 331.110 kb on - strand, within yafL at 331.214 kb on + strand, within yafL at 331.214 kb on + strand, within yafL at 331.215 kb on - strand, within yafL at 331.215 kb on - strand, within yafL at 331.215 kb on - strand, within yafL at 331.262 kb on + strand, within yafL at 331.262 kb on + strand, within yafL at 331.262 kb on + strand, within yafL at 331.263 kb on - strand, within yafL at 331.325 kb on + strand, within yafL at 331.325 kb on + strand, within yafL at 331.326 kb on - strand, within yafL at 331.326 kb on - strand, within yafL at 331.377 kb on + strand, within yafL at 331.377 kb on + strand, within yafL at 331.377 kb on + strand, within yafL at 331.378 kb on - strand, within yafL at 331.378 kb on - strand, within yafL at 331.378 kb on - strand, within yafL at 331.397 kb on - strand, within yafL at 331.480 kb on + strand, within yafL at 331.481 kb on - strand, within yafL at 331.541 kb on + strand, within yafL at 331.541 kb on + strand, within yafL at 331.541 kb on + strand, within yafL at 331.541 kb on + strand, within yafL at 331.541 kb on + strand, within yafL at 331.541 kb on + strand, within yafL at 331.542 kb on - strand, within yafL at 331.542 kb on - strand, within yafL at 331.542 kb on - strand, within yafL at 331.542 kb on - strand, within yafL at 331.542 kb on - strand, within yafL at 331.542 kb on - strand, within yafL at 331.572 kb on - strand, within yafL at 331.619 kb on + strand, within yafL at 331.619 kb on + strand, within yafL at 331.619 kb on + strand, within yafL at 331.619 kb on + strand, within yafL at 331.632 kb on + strand, within yafL at 331.632 kb on + strand, within yafL at 331.632 kb on + strand, within yafL at 331.632 kb on + strand, within yafL at 331.632 kb on + strand, within yafL at 331.633 kb on - strand, within yafL at 331.633 kb on - strand, within yafL at 331.684 kb on + strand at 331.725 kb on + strand at 331.726 kb on - strand at 331.789 kb on + strand at 331.790 kb on - strand at 331.801 kb on - strand at 331.912 kb on + strand at 331.914 kb on + strand at 331.914 kb on + strand at 332.000 kb on - strand, within dinJ at 332.096 kb on + strand, within dinJ at 332.097 kb on - strand, within dinJ at 332.151 kb on - strand, within dinJ at 332.174 kb on - strand at 332.193 kb on + strand at 332.306 kb on - strand, within yafQ at 332.338 kb on + strand, within yafQ at 332.339 kb on - strand, within yafQ at 332.420 kb on - strand, within yafQ at 332.420 kb on - strand, within yafQ at 332.499 kb on + strand at 332.525 kb on - strand at 332.541 kb on + strand at 332.542 kb on - strand at 332.583 kb on + strand at 332.584 kb on - strand at 332.638 kb on - strand at 332.706 kb on + strand, within dpaA at 332.706 kb on + strand, within dpaA at 332.706 kb on + strand, within dpaA at 332.707 kb on - strand, within dpaA at 332.734 kb on + strand, within dpaA at 332.734 kb on + strand, within dpaA at 332.734 kb on + strand, within dpaA at 332.735 kb on - strand, within dpaA at 332.736 kb on + strand, within dpaA at 332.736 kb on + strand, within dpaA at 332.736 kb on + strand, within dpaA at 332.736 kb on + strand, within dpaA at 332.736 kb on + strand, within dpaA at 332.736 kb on + strand, within dpaA at 332.737 kb on - strand, within dpaA at 332.764 kb on + strand, within dpaA at 332.765 kb on - strand, within dpaA at 332.790 kb on + strand, within dpaA at 332.790 kb on + strand, within dpaA at 332.790 kb on + strand, within dpaA at 332.804 kb on - strand, within dpaA at 332.824 kb on + strand, within dpaA at 332.842 kb on + strand, within dpaA at 332.844 kb on + strand, within dpaA at 332.920 kb on - strand, within dpaA at 332.931 kb on + strand, within dpaA at 332.959 kb on + strand, within dpaA at 332.959 kb on + strand, within dpaA at 332.959 kb on + strand, within dpaA at 332.960 kb on - strand, within dpaA at 332.960 kb on - strand, within dpaA at 332.960 kb on - strand, within dpaA at 332.970 kb on + strand, within dpaA at 332.992 kb on + strand, within dpaA at 333.010 kb on + strand, within dpaA at 333.022 kb on + strand, within dpaA at 333.062 kb on - strand, within dpaA at 333.081 kb on + strand, within dpaA at 333.147 kb on + strand, within dpaA at 333.147 kb on + strand, within dpaA at 333.147 kb on + strand, within dpaA at 333.147 kb on + strand, within dpaA at 333.147 kb on + strand, within dpaA at 333.148 kb on - strand, within dpaA at 333.148 kb on - strand, within dpaA at 333.151 kb on + strand, within dpaA at 333.189 kb on + strand, within dpaA
Per-strain Table
Position Strand Gene LocusTag Fraction Bas69 remove 331,109 + yafL NOLOHH_02120 0.17 -0.4 331,109 + yafL NOLOHH_02120 0.17 -0.7 331,109 + yafL NOLOHH_02120 0.17 +0.7 331,110 - yafL NOLOHH_02120 0.17 +0.5 331,110 - yafL NOLOHH_02120 0.17 -0.1 331,110 - yafL NOLOHH_02120 0.17 +2.0 331,110 - yafL NOLOHH_02120 0.17 +0.6 331,110 - yafL NOLOHH_02120 0.17 +1.2 331,110 - yafL NOLOHH_02120 0.17 +2.2 331,110 - yafL NOLOHH_02120 0.17 -1.2 331,214 + yafL NOLOHH_02120 0.31 -1.2 331,214 + yafL NOLOHH_02120 0.31 -1.9 331,215 - yafL NOLOHH_02120 0.31 -1.1 331,215 - yafL NOLOHH_02120 0.31 -2.1 331,215 - yafL NOLOHH_02120 0.31 +0.9 331,262 + yafL NOLOHH_02120 0.37 +0.0 331,262 + yafL NOLOHH_02120 0.37 +0.9 331,262 + yafL NOLOHH_02120 0.37 -1.1 331,263 - yafL NOLOHH_02120 0.37 -0.1 331,325 + yafL NOLOHH_02120 0.45 -0.1 331,325 + yafL NOLOHH_02120 0.45 +2.5 331,326 - yafL NOLOHH_02120 0.45 -1.9 331,326 - yafL NOLOHH_02120 0.45 +0.8 331,377 + yafL NOLOHH_02120 0.52 -0.1 331,377 + yafL NOLOHH_02120 0.52 -1.2 331,377 + yafL NOLOHH_02120 0.52 -1.2 331,378 - yafL NOLOHH_02120 0.52 +1.3 331,378 - yafL NOLOHH_02120 0.52 -2.1 331,378 - yafL NOLOHH_02120 0.52 +2.5 331,397 - yafL NOLOHH_02120 0.54 -0.7 331,480 + yafL NOLOHH_02120 0.65 -0.7 331,481 - yafL NOLOHH_02120 0.65 +0.3 331,541 + yafL NOLOHH_02120 0.73 +0.9 331,541 + yafL NOLOHH_02120 0.73 +0.9 331,541 + yafL NOLOHH_02120 0.73 +0.2 331,541 + yafL NOLOHH_02120 0.73 +1.5 331,541 + yafL NOLOHH_02120 0.73 -1.3 331,541 + yafL NOLOHH_02120 0.73 -0.1 331,542 - yafL NOLOHH_02120 0.73 +0.6 331,542 - yafL NOLOHH_02120 0.73 +0.6 331,542 - yafL NOLOHH_02120 0.73 -1.7 331,542 - yafL NOLOHH_02120 0.73 +0.9 331,542 - yafL NOLOHH_02120 0.73 +0.2 331,542 - yafL NOLOHH_02120 0.73 +2.7 331,572 - yafL NOLOHH_02120 0.77 -1.4 331,619 + yafL NOLOHH_02120 0.83 +2.5 331,619 + yafL NOLOHH_02120 0.83 +1.3 331,619 + yafL NOLOHH_02120 0.83 +0.3 331,619 + yafL NOLOHH_02120 0.83 -1.1 331,632 + yafL NOLOHH_02120 0.85 +0.3 331,632 + yafL NOLOHH_02120 0.85 -1.2 331,632 + yafL NOLOHH_02120 0.85 -2.1 331,632 + yafL NOLOHH_02120 0.85 -1.1 331,632 + yafL NOLOHH_02120 0.85 -1.7 331,633 - yafL NOLOHH_02120 0.85 +2.2 331,633 - yafL NOLOHH_02120 0.85 -2.4 331,684 + +0.0 331,725 + -0.1 331,726 - -0.7 331,789 + -0.1 331,790 - +1.5 331,801 - +1.2 331,912 + +1.0 331,914 + -1.1 331,914 + -0.4 332,000 - dinJ NOLOHH_02125 0.25 -1.4 332,096 + dinJ NOLOHH_02125 0.62 -0.4 332,097 - dinJ NOLOHH_02125 0.62 -0.7 332,151 - dinJ NOLOHH_02125 0.83 -3.0 332,174 - -0.1 332,193 + -0.4 332,306 - yafQ NOLOHH_02130 0.39 -1.7 332,338 + yafQ NOLOHH_02130 0.50 -0.3 332,339 - yafQ NOLOHH_02130 0.51 +0.1 332,420 - yafQ NOLOHH_02130 0.80 +0.9 332,420 - yafQ NOLOHH_02130 0.80 +0.2 332,499 + -1.8 332,525 - -0.4 332,541 + +0.9 332,542 - +0.3 332,583 + +1.9 332,584 - +0.3 332,638 - +0.0 332,706 + dpaA NOLOHH_02135 0.10 +2.0 332,706 + dpaA NOLOHH_02135 0.10 -0.1 332,706 + dpaA NOLOHH_02135 0.10 +0.5 332,707 - dpaA NOLOHH_02135 0.10 -0.1 332,734 + dpaA NOLOHH_02135 0.14 +2.7 332,734 + dpaA NOLOHH_02135 0.14 +1.8 332,734 + dpaA NOLOHH_02135 0.14 +0.9 332,735 - dpaA NOLOHH_02135 0.14 +1.1 332,736 + dpaA NOLOHH_02135 0.14 +0.4 332,736 + dpaA NOLOHH_02135 0.14 +1.7 332,736 + dpaA NOLOHH_02135 0.14 +0.4 332,736 + dpaA NOLOHH_02135 0.14 +2.9 332,736 + dpaA NOLOHH_02135 0.14 -1.0 332,736 + dpaA NOLOHH_02135 0.14 -0.1 332,737 - dpaA NOLOHH_02135 0.14 +1.2 332,764 + dpaA NOLOHH_02135 0.18 -1.7 332,765 - dpaA NOLOHH_02135 0.18 -0.7 332,790 + dpaA NOLOHH_02135 0.21 +0.6 332,790 + dpaA NOLOHH_02135 0.21 +0.9 332,790 + dpaA NOLOHH_02135 0.21 +0.5 332,804 - dpaA NOLOHH_02135 0.23 +1.1 332,824 + dpaA NOLOHH_02135 0.26 +0.2 332,842 + dpaA NOLOHH_02135 0.28 +1.9 332,844 + dpaA NOLOHH_02135 0.29 +1.1 332,920 - dpaA NOLOHH_02135 0.39 +2.8 332,931 + dpaA NOLOHH_02135 0.40 +2.5 332,959 + dpaA NOLOHH_02135 0.44 +1.7 332,959 + dpaA NOLOHH_02135 0.44 +1.2 332,959 + dpaA NOLOHH_02135 0.44 -0.1 332,960 - dpaA NOLOHH_02135 0.44 +0.7 332,960 - dpaA NOLOHH_02135 0.44 +1.8 332,960 - dpaA NOLOHH_02135 0.44 -0.4 332,970 + dpaA NOLOHH_02135 0.46 -2.1 332,992 + dpaA NOLOHH_02135 0.49 +3.9 333,010 + dpaA NOLOHH_02135 0.51 +0.3 333,022 + dpaA NOLOHH_02135 0.53 +3.5 333,062 - dpaA NOLOHH_02135 0.58 +0.9 333,081 + dpaA NOLOHH_02135 0.61 +0.4 333,147 + dpaA NOLOHH_02135 0.70 +0.0 333,147 + dpaA NOLOHH_02135 0.70 +0.2 333,147 + dpaA NOLOHH_02135 0.70 +3.2 333,147 + dpaA NOLOHH_02135 0.70 +1.5 333,147 + dpaA NOLOHH_02135 0.70 -0.7 333,148 - dpaA NOLOHH_02135 0.70 +0.2 333,148 - dpaA NOLOHH_02135 0.70 +0.9 333,151 + dpaA NOLOHH_02135 0.70 -1.4 333,189 + dpaA NOLOHH_02135 0.75 +2.2
Or see this region's nucleotide sequence