Strain Fitness in Escherichia coli ECOR27 around NOLOHH_00320

Experiment: Bas69

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntvirB9 and NOLOHH_00310 overlap by 4 nucleotidesNOLOHH_00310 and NOLOHH_00315 overlap by 11 nucleotidesNOLOHH_00315 and NOLOHH_00320 are separated by 2 nucleotidesNOLOHH_00320 and NOLOHH_00325 are separated by 14 nucleotides NOLOHH_00305: virB9 - P-type conjugative transfer protein VirB9, at 10,360 to 11,268 virB9 NOLOHH_00310: NOLOHH_00310 - VirB8 domain-containing protein, at 11,265 to 11,954 _00310 NOLOHH_00315: NOLOHH_00315 - Cnjugal protein Pilx7, at 11,944 to 12,084 _00315 NOLOHH_00320: NOLOHH_00320 - hypothetical protein, at 12,087 to 12,302 _00320 NOLOHH_00325: NOLOHH_00325 - conjugal transfer protein TrbL, at 12,317 to 13,375 _00325 Position (kb) 12 13Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 11.158 kb on - strand, within virB9at 11.159 kb on + strand, within virB9at 11.160 kb on - strand, within virB9at 11.160 kb on - strand, within virB9at 11.215 kb on - strandat 11.219 kb on - strandat 11.257 kb on + strandat 11.262 kb on + strandat 11.379 kb on - strand, within NOLOHH_00310at 11.379 kb on - strand, within NOLOHH_00310at 11.381 kb on + strand, within NOLOHH_00310at 11.556 kb on - strand, within NOLOHH_00310at 11.586 kb on - strand, within NOLOHH_00310at 11.683 kb on - strand, within NOLOHH_00310at 11.710 kb on - strand, within NOLOHH_00310at 11.712 kb on - strand, within NOLOHH_00310at 11.900 kb on + strandat 11.971 kb on - strand, within NOLOHH_00315at 12.056 kb on - strand, within NOLOHH_00315at 12.110 kb on + strand, within NOLOHH_00320at 12.111 kb on - strand, within NOLOHH_00320at 12.279 kb on + strand, within NOLOHH_00320at 12.338 kb on + strandat 12.343 kb on + strandat 12.428 kb on + strand, within NOLOHH_00325at 12.429 kb on - strand, within NOLOHH_00325at 12.446 kb on - strand, within NOLOHH_00325at 12.524 kb on - strand, within NOLOHH_00325at 12.579 kb on - strand, within NOLOHH_00325at 12.579 kb on - strand, within NOLOHH_00325at 12.579 kb on - strand, within NOLOHH_00325at 12.638 kb on + strand, within NOLOHH_00325at 12.654 kb on - strand, within NOLOHH_00325at 12.655 kb on + strand, within NOLOHH_00325at 12.656 kb on - strand, within NOLOHH_00325at 12.656 kb on - strand, within NOLOHH_00325at 12.658 kb on - strand, within NOLOHH_00325at 12.660 kb on - strand, within NOLOHH_00325at 12.986 kb on - strand, within NOLOHH_00325at 13.152 kb on - strand, within NOLOHH_00325at 13.164 kb on - strand, within NOLOHH_00325at 13.231 kb on - strand, within NOLOHH_00325

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Bas69
remove
11,158 - virB9 NOLOHH_00305 0.88 -0.5
11,159 + virB9 NOLOHH_00305 0.88 +2.0
11,160 - virB9 NOLOHH_00305 0.88 -0.1
11,160 - virB9 NOLOHH_00305 0.88 +0.8
11,215 - -0.9
11,219 - -3.0
11,257 + -0.7
11,262 + +0.4
11,379 - NOLOHH_00310 0.17 -3.1
11,379 - NOLOHH_00310 0.17 -0.5
11,381 + NOLOHH_00310 0.17 -1.0
11,556 - NOLOHH_00310 0.42 -1.2
11,586 - NOLOHH_00310 0.47 +0.4
11,683 - NOLOHH_00310 0.61 +0.4
11,710 - NOLOHH_00310 0.64 -0.9
11,712 - NOLOHH_00310 0.65 -0.4
11,900 + +0.5
11,971 - NOLOHH_00315 0.19 +0.9
12,056 - NOLOHH_00315 0.79 +0.7
12,110 + NOLOHH_00320 0.11 -1.9
12,111 - NOLOHH_00320 0.11 +0.2
12,279 + NOLOHH_00320 0.89 +0.9
12,338 + +1.3
12,343 + +0.5
12,428 + NOLOHH_00325 0.10 +1.3
12,429 - NOLOHH_00325 0.11 +2.1
12,446 - NOLOHH_00325 0.12 -1.8
12,524 - NOLOHH_00325 0.20 -0.4
12,579 - NOLOHH_00325 0.25 +0.3
12,579 - NOLOHH_00325 0.25 -0.7
12,579 - NOLOHH_00325 0.25 +1.8
12,638 + NOLOHH_00325 0.30 +0.6
12,654 - NOLOHH_00325 0.32 +0.1
12,655 + NOLOHH_00325 0.32 -1.6
12,656 - NOLOHH_00325 0.32 +0.6
12,656 - NOLOHH_00325 0.32 +1.4
12,658 - NOLOHH_00325 0.32 +0.8
12,660 - NOLOHH_00325 0.32 +0.5
12,986 - NOLOHH_00325 0.63 -1.6
13,152 - NOLOHH_00325 0.79 +0.7
13,164 - NOLOHH_00325 0.80 +1.5
13,231 - NOLOHH_00325 0.86 +0.8

Or see this region's nucleotide sequence