Experiment: no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OKGIIK_05370 and OKGIIK_05375 are separated by 18 nucleotides OKGIIK_05375 and modA are separated by 81 nucleotides modA and OKGIIK_05385 overlap by 4 nucleotides
OKGIIK_05370: OKGIIK_05370 - TonB-dep-Rec domain-containing protein, at 1,172,309 to 1,174,600
_05370
OKGIIK_05375: OKGIIK_05375 - DUF2478 domain-containing protein, at 1,174,619 to 1,175,149
_05375
OKGIIK_05380: modA - substrate-binding domain-containing protein, at 1,175,231 to 1,176,064
modA
OKGIIK_05385: OKGIIK_05385 - TonB-dependent receptor, at 1,176,061 to 1,178,187
_05385
Position (kb)
1175
1176
1177 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1174.263 kb on + strand, within OKGIIK_05370 at 1174.351 kb on + strand, within OKGIIK_05370 at 1174.351 kb on + strand, within OKGIIK_05370 at 1174.352 kb on - strand, within OKGIIK_05370 at 1174.453 kb on + strand at 1174.454 kb on - strand at 1174.630 kb on + strand at 1174.630 kb on + strand at 1174.630 kb on + strand at 1174.631 kb on - strand at 1174.631 kb on - strand at 1174.760 kb on + strand, within OKGIIK_05375 at 1175.016 kb on + strand, within OKGIIK_05375 at 1175.016 kb on + strand, within OKGIIK_05375 at 1175.016 kb on + strand, within OKGIIK_05375 at 1175.016 kb on + strand, within OKGIIK_05375 at 1175.016 kb on + strand, within OKGIIK_05375 at 1175.016 kb on + strand, within OKGIIK_05375 at 1175.024 kb on + strand, within OKGIIK_05375 at 1175.024 kb on + strand, within OKGIIK_05375 at 1175.024 kb on + strand, within OKGIIK_05375 at 1175.024 kb on + strand, within OKGIIK_05375 at 1175.024 kb on + strand, within OKGIIK_05375 at 1175.024 kb on + strand, within OKGIIK_05375 at 1175.025 kb on - strand, within OKGIIK_05375 at 1175.109 kb on + strand at 1175.110 kb on - strand at 1175.110 kb on - strand at 1175.307 kb on + strand at 1175.308 kb on - strand at 1175.308 kb on - strand at 1175.308 kb on - strand at 1175.377 kb on - strand, within modA at 1175.377 kb on - strand, within modA at 1175.458 kb on - strand, within modA at 1175.631 kb on + strand, within modA at 1175.631 kb on + strand, within modA at 1175.631 kb on + strand, within modA at 1175.632 kb on - strand, within modA at 1175.632 kb on - strand, within modA at 1175.737 kb on + strand, within modA at 1175.738 kb on - strand, within modA at 1175.738 kb on - strand, within modA at 1175.765 kb on + strand, within modA at 1175.765 kb on + strand, within modA at 1175.765 kb on + strand, within modA at 1175.766 kb on - strand, within modA at 1175.766 kb on - strand, within modA at 1175.832 kb on + strand, within modA at 1175.832 kb on + strand, within modA at 1175.833 kb on - strand, within modA at 1175.833 kb on - strand, within modA at 1175.833 kb on - strand, within modA at 1175.833 kb on - strand, within modA at 1175.833 kb on - strand, within modA at 1175.925 kb on + strand, within modA at 1175.926 kb on - strand, within modA at 1175.926 kb on - strand, within modA at 1175.974 kb on - strand, within modA at 1175.974 kb on - strand, within modA at 1176.064 kb on + strand at 1176.064 kb on + strand at 1176.064 kb on + strand at 1176.065 kb on - strand at 1176.065 kb on - strand at 1176.091 kb on + strand at 1176.091 kb on + strand at 1176.091 kb on + strand at 1176.091 kb on + strand at 1176.091 kb on + strand at 1176.091 kb on + strand at 1176.091 kb on + strand at 1176.092 kb on - strand at 1176.140 kb on + strand at 1176.141 kb on - strand at 1176.141 kb on - strand at 1176.141 kb on - strand at 1176.176 kb on + strand at 1176.177 kb on - strand at 1176.177 kb on - strand at 1176.177 kb on - strand at 1176.177 kb on - strand at 1176.246 kb on - strand at 1176.270 kb on + strand at 1176.270 kb on + strand at 1176.270 kb on + strand at 1176.270 kb on + strand at 1176.271 kb on - strand at 1176.271 kb on - strand at 1176.271 kb on - strand at 1176.271 kb on - strand at 1176.271 kb on - strand at 1176.271 kb on - strand at 1176.272 kb on + strand at 1176.272 kb on + strand at 1176.273 kb on - strand at 1176.273 kb on - strand at 1176.326 kb on + strand, within OKGIIK_05385 at 1176.326 kb on + strand, within OKGIIK_05385 at 1176.326 kb on + strand, within OKGIIK_05385 at 1176.326 kb on + strand, within OKGIIK_05385 at 1176.326 kb on + strand, within OKGIIK_05385 at 1176.326 kb on + strand, within OKGIIK_05385 at 1176.326 kb on + strand, within OKGIIK_05385 at 1176.326 kb on + strand, within OKGIIK_05385 at 1176.326 kb on + strand, within OKGIIK_05385 at 1176.326 kb on + strand, within OKGIIK_05385 at 1176.326 kb on + strand, within OKGIIK_05385 at 1176.326 kb on + strand, within OKGIIK_05385 at 1176.326 kb on + strand, within OKGIIK_05385 at 1176.327 kb on - strand, within OKGIIK_05385 at 1176.327 kb on - strand, within OKGIIK_05385 at 1176.327 kb on - strand, within OKGIIK_05385 at 1176.327 kb on - strand, within OKGIIK_05385 at 1176.327 kb on - strand, within OKGIIK_05385 at 1176.327 kb on - strand, within OKGIIK_05385 at 1176.327 kb on - strand, within OKGIIK_05385 at 1176.327 kb on - strand, within OKGIIK_05385 at 1176.327 kb on - strand, within OKGIIK_05385 at 1176.327 kb on - strand, within OKGIIK_05385 at 1176.372 kb on - strand, within OKGIIK_05385 at 1176.383 kb on - strand, within OKGIIK_05385 at 1176.383 kb on - strand, within OKGIIK_05385 at 1176.383 kb on - strand, within OKGIIK_05385 at 1176.393 kb on + strand, within OKGIIK_05385 at 1176.394 kb on - strand, within OKGIIK_05385 at 1176.484 kb on + strand, within OKGIIK_05385 at 1176.484 kb on + strand, within OKGIIK_05385 at 1176.520 kb on + strand, within OKGIIK_05385 at 1176.521 kb on - strand, within OKGIIK_05385 at 1176.521 kb on - strand, within OKGIIK_05385 at 1176.581 kb on + strand, within OKGIIK_05385 at 1176.581 kb on + strand, within OKGIIK_05385 at 1176.581 kb on + strand, within OKGIIK_05385 at 1176.581 kb on + strand, within OKGIIK_05385 at 1176.581 kb on + strand, within OKGIIK_05385 at 1176.581 kb on + strand, within OKGIIK_05385 at 1176.581 kb on + strand, within OKGIIK_05385 at 1176.581 kb on + strand, within OKGIIK_05385 at 1176.581 kb on + strand, within OKGIIK_05385 at 1176.582 kb on - strand, within OKGIIK_05385 at 1176.582 kb on - strand, within OKGIIK_05385 at 1176.582 kb on - strand, within OKGIIK_05385 at 1176.582 kb on - strand, within OKGIIK_05385 at 1176.582 kb on - strand, within OKGIIK_05385 at 1176.647 kb on + strand, within OKGIIK_05385 at 1176.647 kb on + strand, within OKGIIK_05385 at 1176.648 kb on - strand, within OKGIIK_05385 at 1176.648 kb on - strand, within OKGIIK_05385 at 1176.648 kb on - strand, within OKGIIK_05385 at 1176.733 kb on + strand, within OKGIIK_05385 at 1176.733 kb on + strand, within OKGIIK_05385 at 1176.733 kb on + strand, within OKGIIK_05385 at 1176.733 kb on + strand, within OKGIIK_05385 at 1176.733 kb on + strand, within OKGIIK_05385 at 1176.734 kb on - strand, within OKGIIK_05385 at 1176.734 kb on - strand, within OKGIIK_05385 at 1176.734 kb on - strand, within OKGIIK_05385 at 1176.734 kb on - strand, within OKGIIK_05385 at 1176.734 kb on - strand, within OKGIIK_05385 at 1176.734 kb on - strand, within OKGIIK_05385 at 1176.734 kb on - strand, within OKGIIK_05385 at 1176.734 kb on - strand, within OKGIIK_05385 at 1176.746 kb on + strand, within OKGIIK_05385 at 1176.746 kb on + strand, within OKGIIK_05385 at 1176.755 kb on + strand, within OKGIIK_05385 at 1176.755 kb on + strand, within OKGIIK_05385 at 1176.755 kb on + strand, within OKGIIK_05385 at 1176.755 kb on + strand, within OKGIIK_05385 at 1176.756 kb on - strand, within OKGIIK_05385 at 1176.782 kb on + strand, within OKGIIK_05385 at 1176.782 kb on + strand, within OKGIIK_05385 at 1176.782 kb on + strand, within OKGIIK_05385 at 1176.783 kb on - strand, within OKGIIK_05385 at 1176.783 kb on - strand, within OKGIIK_05385 at 1176.783 kb on - strand, within OKGIIK_05385 at 1176.783 kb on - strand, within OKGIIK_05385 at 1176.821 kb on + strand, within OKGIIK_05385 at 1176.822 kb on - strand, within OKGIIK_05385 at 1176.822 kb on - strand, within OKGIIK_05385 at 1176.851 kb on + strand, within OKGIIK_05385 at 1176.851 kb on + strand, within OKGIIK_05385 at 1176.851 kb on + strand, within OKGIIK_05385 at 1176.852 kb on - strand, within OKGIIK_05385 at 1176.852 kb on - strand, within OKGIIK_05385 at 1176.893 kb on - strand, within OKGIIK_05385 at 1177.060 kb on + strand, within OKGIIK_05385 at 1177.060 kb on + strand, within OKGIIK_05385 at 1177.060 kb on + strand, within OKGIIK_05385 at 1177.060 kb on + strand, within OKGIIK_05385 at 1177.061 kb on - strand, within OKGIIK_05385 at 1177.061 kb on - strand, within OKGIIK_05385 at 1177.061 kb on - strand, within OKGIIK_05385 at 1177.061 kb on - strand, within OKGIIK_05385 at 1177.064 kb on + strand, within OKGIIK_05385 at 1177.064 kb on + strand, within OKGIIK_05385 at 1177.064 kb on + strand, within OKGIIK_05385 at 1177.064 kb on + strand, within OKGIIK_05385 at 1177.064 kb on + strand, within OKGIIK_05385 at 1177.064 kb on + strand, within OKGIIK_05385 at 1177.064 kb on + strand, within OKGIIK_05385 at 1177.064 kb on + strand, within OKGIIK_05385
Per-strain Table
Position Strand Gene LocusTag Fraction no stress control remove 1,174,263 + OKGIIK_05370 0.85 -0.2 1,174,351 + OKGIIK_05370 0.89 -1.5 1,174,351 + OKGIIK_05370 0.89 +0.9 1,174,352 - OKGIIK_05370 0.89 -0.1 1,174,453 + -1.8 1,174,454 - +1.5 1,174,630 + -2.3 1,174,630 + -0.7 1,174,630 + -0.4 1,174,631 - +1.0 1,174,631 - +1.8 1,174,760 + OKGIIK_05375 0.27 -0.9 1,175,016 + OKGIIK_05375 0.75 -1.1 1,175,016 + OKGIIK_05375 0.75 -1.6 1,175,016 + OKGIIK_05375 0.75 +0.3 1,175,016 + OKGIIK_05375 0.75 -0.7 1,175,016 + OKGIIK_05375 0.75 +0.2 1,175,016 + OKGIIK_05375 0.75 +0.1 1,175,024 + OKGIIK_05375 0.76 -0.9 1,175,024 + OKGIIK_05375 0.76 -1.3 1,175,024 + OKGIIK_05375 0.76 +0.3 1,175,024 + OKGIIK_05375 0.76 -2.3 1,175,024 + OKGIIK_05375 0.76 +0.1 1,175,024 + OKGIIK_05375 0.76 -1.1 1,175,025 - OKGIIK_05375 0.76 +1.6 1,175,109 + +1.3 1,175,110 - +0.5 1,175,110 - -0.5 1,175,307 + -0.4 1,175,308 - +0.2 1,175,308 - +1.2 1,175,308 - +2.0 1,175,377 - modA OKGIIK_05380 0.18 -0.7 1,175,377 - modA OKGIIK_05380 0.18 +0.2 1,175,458 - modA OKGIIK_05380 0.27 +1.2 1,175,631 + modA OKGIIK_05380 0.48 -1.2 1,175,631 + modA OKGIIK_05380 0.48 -1.7 1,175,631 + modA OKGIIK_05380 0.48 +0.5 1,175,632 - modA OKGIIK_05380 0.48 -2.3 1,175,632 - modA OKGIIK_05380 0.48 -0.1 1,175,737 + modA OKGIIK_05380 0.61 -0.1 1,175,738 - modA OKGIIK_05380 0.61 -0.1 1,175,738 - modA OKGIIK_05380 0.61 +0.2 1,175,765 + modA OKGIIK_05380 0.64 -0.7 1,175,765 + modA OKGIIK_05380 0.64 -1.4 1,175,765 + modA OKGIIK_05380 0.64 -1.4 1,175,766 - modA OKGIIK_05380 0.64 +0.4 1,175,766 - modA OKGIIK_05380 0.64 -0.4 1,175,832 + modA OKGIIK_05380 0.72 +0.3 1,175,832 + modA OKGIIK_05380 0.72 +1.0 1,175,833 - modA OKGIIK_05380 0.72 -1.3 1,175,833 - modA OKGIIK_05380 0.72 +0.1 1,175,833 - modA OKGIIK_05380 0.72 -0.4 1,175,833 - modA OKGIIK_05380 0.72 -0.2 1,175,833 - modA OKGIIK_05380 0.72 +1.1 1,175,925 + modA OKGIIK_05380 0.83 +0.6 1,175,926 - modA OKGIIK_05380 0.83 -1.2 1,175,926 - modA OKGIIK_05380 0.83 -1.2 1,175,974 - modA OKGIIK_05380 0.89 -0.5 1,175,974 - modA OKGIIK_05380 0.89 -0.6 1,176,064 + +1.1 1,176,064 + -1.4 1,176,064 + -2.3 1,176,065 - +0.3 1,176,065 - +0.1 1,176,091 + -0.4 1,176,091 + -0.4 1,176,091 + -0.9 1,176,091 + +0.1 1,176,091 + -1.8 1,176,091 + -0.4 1,176,091 + +0.4 1,176,092 - +0.4 1,176,140 + +0.2 1,176,141 - -0.8 1,176,141 - +0.1 1,176,141 - +0.2 1,176,176 + +0.8 1,176,177 - +0.6 1,176,177 - -1.8 1,176,177 - -1.2 1,176,177 - +1.1 1,176,246 - -0.5 1,176,270 + +0.6 1,176,270 + -1.7 1,176,270 + -0.5 1,176,270 + -1.2 1,176,271 - -1.0 1,176,271 - +0.7 1,176,271 - +0.6 1,176,271 - +0.1 1,176,271 - +0.1 1,176,271 - -1.7 1,176,272 + +1.6 1,176,272 + -0.7 1,176,273 - -0.9 1,176,273 - +0.3 1,176,326 + OKGIIK_05385 0.12 +1.4 1,176,326 + OKGIIK_05385 0.12 -0.3 1,176,326 + OKGIIK_05385 0.12 -1.7 1,176,326 + OKGIIK_05385 0.12 +0.5 1,176,326 + OKGIIK_05385 0.12 -0.2 1,176,326 + OKGIIK_05385 0.12 +0.6 1,176,326 + OKGIIK_05385 0.12 +0.5 1,176,326 + OKGIIK_05385 0.12 +1.0 1,176,326 + OKGIIK_05385 0.12 -0.7 1,176,326 + OKGIIK_05385 0.12 -0.9 1,176,326 + OKGIIK_05385 0.12 -3.0 1,176,326 + OKGIIK_05385 0.12 +0.1 1,176,326 + OKGIIK_05385 0.12 -0.7 1,176,327 - OKGIIK_05385 0.13 -0.6 1,176,327 - OKGIIK_05385 0.13 -0.8 1,176,327 - OKGIIK_05385 0.13 -1.7 1,176,327 - OKGIIK_05385 0.13 +0.3 1,176,327 - OKGIIK_05385 0.13 -0.2 1,176,327 - OKGIIK_05385 0.13 -0.1 1,176,327 - OKGIIK_05385 0.13 -0.4 1,176,327 - OKGIIK_05385 0.13 -1.5 1,176,327 - OKGIIK_05385 0.13 +1.0 1,176,327 - OKGIIK_05385 0.13 +0.3 1,176,372 - OKGIIK_05385 0.15 -0.9 1,176,383 - OKGIIK_05385 0.15 -0.3 1,176,383 - OKGIIK_05385 0.15 -1.4 1,176,383 - OKGIIK_05385 0.15 +0.2 1,176,393 + OKGIIK_05385 0.16 -0.8 1,176,394 - OKGIIK_05385 0.16 -0.4 1,176,484 + OKGIIK_05385 0.20 +0.7 1,176,484 + OKGIIK_05385 0.20 -2.4 1,176,520 + OKGIIK_05385 0.22 -0.4 1,176,521 - OKGIIK_05385 0.22 -0.7 1,176,521 - OKGIIK_05385 0.22 -1.0 1,176,581 + OKGIIK_05385 0.24 +0.6 1,176,581 + OKGIIK_05385 0.24 +2.3 1,176,581 + OKGIIK_05385 0.24 -0.9 1,176,581 + OKGIIK_05385 0.24 -1.2 1,176,581 + OKGIIK_05385 0.24 +1.8 1,176,581 + OKGIIK_05385 0.24 -1.3 1,176,581 + OKGIIK_05385 0.24 +0.2 1,176,581 + OKGIIK_05385 0.24 +0.3 1,176,581 + OKGIIK_05385 0.24 +1.2 1,176,582 - OKGIIK_05385 0.24 -0.5 1,176,582 - OKGIIK_05385 0.24 +0.3 1,176,582 - OKGIIK_05385 0.24 -0.2 1,176,582 - OKGIIK_05385 0.24 +0.4 1,176,582 - OKGIIK_05385 0.24 -0.1 1,176,647 + OKGIIK_05385 0.28 -1.5 1,176,647 + OKGIIK_05385 0.28 -1.1 1,176,648 - OKGIIK_05385 0.28 +1.2 1,176,648 - OKGIIK_05385 0.28 -1.4 1,176,648 - OKGIIK_05385 0.28 -1.2 1,176,733 + OKGIIK_05385 0.32 +0.5 1,176,733 + OKGIIK_05385 0.32 -1.3 1,176,733 + OKGIIK_05385 0.32 -2.2 1,176,733 + OKGIIK_05385 0.32 -0.6 1,176,733 + OKGIIK_05385 0.32 -0.1 1,176,734 - OKGIIK_05385 0.32 -3.3 1,176,734 - OKGIIK_05385 0.32 -0.4 1,176,734 - OKGIIK_05385 0.32 -0.9 1,176,734 - OKGIIK_05385 0.32 -1.8 1,176,734 - OKGIIK_05385 0.32 -0.2 1,176,734 - OKGIIK_05385 0.32 -0.6 1,176,734 - OKGIIK_05385 0.32 +1.0 1,176,734 - OKGIIK_05385 0.32 -0.7 1,176,746 + OKGIIK_05385 0.32 -2.2 1,176,746 + OKGIIK_05385 0.32 -0.0 1,176,755 + OKGIIK_05385 0.33 -0.7 1,176,755 + OKGIIK_05385 0.33 +0.1 1,176,755 + OKGIIK_05385 0.33 -3.1 1,176,755 + OKGIIK_05385 0.33 -0.7 1,176,756 - OKGIIK_05385 0.33 -0.1 1,176,782 + OKGIIK_05385 0.34 +0.5 1,176,782 + OKGIIK_05385 0.34 +0.2 1,176,782 + OKGIIK_05385 0.34 -0.6 1,176,783 - OKGIIK_05385 0.34 -0.6 1,176,783 - OKGIIK_05385 0.34 -0.7 1,176,783 - OKGIIK_05385 0.34 -0.9 1,176,783 - OKGIIK_05385 0.34 +0.3 1,176,821 + OKGIIK_05385 0.36 -1.2 1,176,822 - OKGIIK_05385 0.36 -0.1 1,176,822 - OKGIIK_05385 0.36 -1.5 1,176,851 + OKGIIK_05385 0.37 +0.8 1,176,851 + OKGIIK_05385 0.37 +1.6 1,176,851 + OKGIIK_05385 0.37 -0.1 1,176,852 - OKGIIK_05385 0.37 -0.8 1,176,852 - OKGIIK_05385 0.37 -0.7 1,176,893 - OKGIIK_05385 0.39 -1.2 1,177,060 + OKGIIK_05385 0.47 +0.4 1,177,060 + OKGIIK_05385 0.47 -0.9 1,177,060 + OKGIIK_05385 0.47 +0.8 1,177,060 + OKGIIK_05385 0.47 -0.9 1,177,061 - OKGIIK_05385 0.47 -2.5 1,177,061 - OKGIIK_05385 0.47 -0.9 1,177,061 - OKGIIK_05385 0.47 +0.3 1,177,061 - OKGIIK_05385 0.47 -0.1 1,177,064 + OKGIIK_05385 0.47 +1.3 1,177,064 + OKGIIK_05385 0.47 +0.6 1,177,064 + OKGIIK_05385 0.47 -0.4 1,177,064 + OKGIIK_05385 0.47 +0.9 1,177,064 + OKGIIK_05385 0.47 -0.9 1,177,064 + OKGIIK_05385 0.47 +0.1 1,177,064 + OKGIIK_05385 0.47 -1.1 1,177,064 + OKGIIK_05385 0.47 -1.1
Or see this region's nucleotide sequence