Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06861

Experiment: MGL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06859 and MPMX19_06860 overlap by 4 nucleotidesMPMX19_06860 and MPMX19_06861 overlap by 4 nucleotidesMPMX19_06861 and MPMX19_06862 are separated by 11 nucleotidesMPMX19_06862 and MPMX19_06863 overlap by 4 nucleotides MPMX19_06859: MPMX19_06859 - Acetophenone carboxylase delta subunit, at 129,213 to 131,201 _06859 MPMX19_06860: MPMX19_06860 - hypothetical protein, at 131,198 to 131,506 _06860 MPMX19_06861: MPMX19_06861 - Hydrogen cyanide synthase subunit HcnB, at 131,503 to 132,888 _06861 MPMX19_06862: MPMX19_06862 - hypothetical protein, at 132,900 to 133,406 _06862 MPMX19_06863: MPMX19_06863 - hypothetical protein, at 133,403 to 133,882 _06863 Position (kb) 131 132 133Strain fitness (log2 ratio) -3 -2 -1 0 1at 130.846 kb on - strand, within MPMX19_06859at 130.846 kb on - strand, within MPMX19_06859at 130.846 kb on - strand, within MPMX19_06859at 130.846 kb on - strand, within MPMX19_06859at 130.846 kb on - strand, within MPMX19_06859at 130.875 kb on + strand, within MPMX19_06859at 130.875 kb on + strand, within MPMX19_06859at 130.875 kb on + strand, within MPMX19_06859at 130.986 kb on + strand, within MPMX19_06859at 130.987 kb on - strand, within MPMX19_06859at 131.013 kb on + strandat 131.014 kb on - strandat 131.014 kb on - strandat 131.014 kb on - strandat 131.638 kb on + strandat 131.638 kb on + strandat 131.638 kb on + strandat 131.639 kb on - strandat 131.683 kb on + strand, within MPMX19_06861at 131.683 kb on + strand, within MPMX19_06861at 131.683 kb on + strand, within MPMX19_06861at 131.683 kb on + strand, within MPMX19_06861at 131.683 kb on + strand, within MPMX19_06861at 131.683 kb on + strand, within MPMX19_06861at 131.683 kb on + strand, within MPMX19_06861at 131.684 kb on - strand, within MPMX19_06861at 131.684 kb on - strand, within MPMX19_06861at 131.684 kb on - strand, within MPMX19_06861at 131.684 kb on - strand, within MPMX19_06861at 131.839 kb on + strand, within MPMX19_06861at 131.840 kb on - strand, within MPMX19_06861at 131.914 kb on + strand, within MPMX19_06861at 131.914 kb on + strand, within MPMX19_06861at 131.915 kb on - strand, within MPMX19_06861at 131.915 kb on - strand, within MPMX19_06861at 131.915 kb on - strand, within MPMX19_06861at 132.163 kb on + strand, within MPMX19_06861at 132.163 kb on + strand, within MPMX19_06861at 132.163 kb on + strand, within MPMX19_06861at 132.163 kb on + strand, within MPMX19_06861at 132.164 kb on - strand, within MPMX19_06861at 132.164 kb on - strand, within MPMX19_06861at 132.352 kb on + strand, within MPMX19_06861at 132.352 kb on + strand, within MPMX19_06861at 132.353 kb on - strand, within MPMX19_06861at 132.353 kb on - strand, within MPMX19_06861at 132.418 kb on + strand, within MPMX19_06861at 132.418 kb on + strand, within MPMX19_06861at 132.418 kb on + strand, within MPMX19_06861at 132.418 kb on + strand, within MPMX19_06861at 132.419 kb on - strand, within MPMX19_06861at 132.419 kb on - strand, within MPMX19_06861at 132.419 kb on - strand, within MPMX19_06861at 132.419 kb on - strand, within MPMX19_06861at 132.419 kb on - strand, within MPMX19_06861at 132.419 kb on - strand, within MPMX19_06861at 132.419 kb on - strand, within MPMX19_06861at 132.419 kb on - strand, within MPMX19_06861at 132.419 kb on - strand, within MPMX19_06861at 132.419 kb on - strand, within MPMX19_06861at 132.688 kb on + strand, within MPMX19_06861at 132.688 kb on + strand, within MPMX19_06861at 132.689 kb on - strand, within MPMX19_06861at 132.758 kb on - strandat 133.261 kb on + strand, within MPMX19_06862at 133.261 kb on + strand, within MPMX19_06862at 133.261 kb on + strand, within MPMX19_06862at 133.261 kb on + strand, within MPMX19_06862at 133.262 kb on - strand, within MPMX19_06862at 133.262 kb on - strand, within MPMX19_06862at 133.410 kb on + strandat 133.410 kb on + strandat 133.410 kb on + strandat 133.437 kb on + strandat 133.437 kb on + strandat 133.650 kb on + strand, within MPMX19_06863at 133.650 kb on + strand, within MPMX19_06863at 133.650 kb on + strand, within MPMX19_06863at 133.650 kb on + strand, within MPMX19_06863at 133.650 kb on + strand, within MPMX19_06863at 133.725 kb on + strand, within MPMX19_06863at 133.725 kb on + strand, within MPMX19_06863at 133.726 kb on - strand, within MPMX19_06863at 133.836 kb on + strandat 133.837 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MGL
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130,846 - MPMX19_06859 0.82 -0.7
130,846 - MPMX19_06859 0.82 -0.5
130,846 - MPMX19_06859 0.82 -0.8
130,846 - MPMX19_06859 0.82 -1.5
130,846 - MPMX19_06859 0.82 +0.6
130,875 + MPMX19_06859 0.84 +0.5
130,875 + MPMX19_06859 0.84 -0.4
130,875 + MPMX19_06859 0.84 -0.7
130,986 + MPMX19_06859 0.89 -2.1
130,987 - MPMX19_06859 0.89 -0.5
131,013 + +0.3
131,014 - +0.0
131,014 - -1.0
131,014 - -1.0
131,638 + -1.5
131,638 + -0.6
131,638 + -1.5
131,639 - -1.5
131,683 + MPMX19_06861 0.13 +0.9
131,683 + MPMX19_06861 0.13 -0.1
131,683 + MPMX19_06861 0.13 -0.3
131,683 + MPMX19_06861 0.13 -0.7
131,683 + MPMX19_06861 0.13 -0.7
131,683 + MPMX19_06861 0.13 +0.8
131,683 + MPMX19_06861 0.13 -0.1
131,684 - MPMX19_06861 0.13 -1.0
131,684 - MPMX19_06861 0.13 +0.2
131,684 - MPMX19_06861 0.13 -0.7
131,684 - MPMX19_06861 0.13 -2.8
131,839 + MPMX19_06861 0.24 -1.3
131,840 - MPMX19_06861 0.24 +0.0
131,914 + MPMX19_06861 0.30 -1.0
131,914 + MPMX19_06861 0.30 -0.3
131,915 - MPMX19_06861 0.30 -0.7
131,915 - MPMX19_06861 0.30 -0.8
131,915 - MPMX19_06861 0.30 +0.4
132,163 + MPMX19_06861 0.48 -0.0
132,163 + MPMX19_06861 0.48 -0.1
132,163 + MPMX19_06861 0.48 +0.6
132,163 + MPMX19_06861 0.48 -0.4
132,164 - MPMX19_06861 0.48 -0.6
132,164 - MPMX19_06861 0.48 -0.7
132,352 + MPMX19_06861 0.61 -1.1
132,352 + MPMX19_06861 0.61 -1.1
132,353 - MPMX19_06861 0.61 -0.1
132,353 - MPMX19_06861 0.61 -1.1
132,418 + MPMX19_06861 0.66 -0.2
132,418 + MPMX19_06861 0.66 -1.5
132,418 + MPMX19_06861 0.66 -1.6
132,418 + MPMX19_06861 0.66 -0.3
132,419 - MPMX19_06861 0.66 -0.4
132,419 - MPMX19_06861 0.66 +0.5
132,419 - MPMX19_06861 0.66 -1.1
132,419 - MPMX19_06861 0.66 -1.3
132,419 - MPMX19_06861 0.66 -0.5
132,419 - MPMX19_06861 0.66 -1.2
132,419 - MPMX19_06861 0.66 +0.5
132,419 - MPMX19_06861 0.66 -1.4
132,419 - MPMX19_06861 0.66 +0.5
132,419 - MPMX19_06861 0.66 -3.5
132,688 + MPMX19_06861 0.85 -2.1
132,688 + MPMX19_06861 0.85 -1.6
132,689 - MPMX19_06861 0.86 -2.0
132,758 - -0.5
133,261 + MPMX19_06862 0.71 -1.4
133,261 + MPMX19_06862 0.71 -1.7
133,261 + MPMX19_06862 0.71 +0.6
133,261 + MPMX19_06862 0.71 -1.6
133,262 - MPMX19_06862 0.71 -1.4
133,262 - MPMX19_06862 0.71 +0.5
133,410 + -0.5
133,410 + -0.8
133,410 + -1.2
133,437 + -0.6
133,437 + -0.3
133,650 + MPMX19_06863 0.51 +0.2
133,650 + MPMX19_06863 0.51 +1.5
133,650 + MPMX19_06863 0.51 -1.0
133,650 + MPMX19_06863 0.51 +0.1
133,650 + MPMX19_06863 0.51 -1.3
133,725 + MPMX19_06863 0.67 -0.3
133,725 + MPMX19_06863 0.67 -1.5
133,726 - MPMX19_06863 0.67 -1.0
133,836 + -0.1
133,837 - -0.1

Or see this region's nucleotide sequence