Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_06766

Experiment: MGL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_06765 and MPMX19_06766 are separated by 222 nucleotidesMPMX19_06766 and MPMX19_06767 overlap by 4 nucleotides MPMX19_06765: MPMX19_06765 - Hydrogen peroxide-inducible genes activator, at 31,100 to 32,032 _06765 MPMX19_06766: MPMX19_06766 - Bicarbonate transport ATP-binding protein CmpC, at 32,255 to 33,187 _06766 MPMX19_06767: MPMX19_06767 - hypothetical protein, at 33,184 to 34,701 _06767 Position (kb) 32 33 34Strain fitness (log2 ratio) -2 -1 0 1at 31.593 kb on + strand, within MPMX19_06765at 31.594 kb on - strand, within MPMX19_06765at 31.594 kb on - strand, within MPMX19_06765at 32.136 kb on + strandat 32.136 kb on + strandat 32.137 kb on - strandat 32.137 kb on - strandat 32.137 kb on - strandat 32.160 kb on + strandat 32.160 kb on + strandat 32.160 kb on + strandat 32.161 kb on - strandat 32.265 kb on + strandat 32.265 kb on + strandat 32.265 kb on + strandat 32.266 kb on - strandat 32.435 kb on + strand, within MPMX19_06766at 33.262 kb on + strandat 33.262 kb on + strandat 33.263 kb on - strandat 33.475 kb on + strand, within MPMX19_06767at 33.475 kb on + strand, within MPMX19_06767at 33.475 kb on + strand, within MPMX19_06767at 33.475 kb on + strand, within MPMX19_06767at 33.476 kb on - strand, within MPMX19_06767at 33.476 kb on - strand, within MPMX19_06767at 33.476 kb on - strand, within MPMX19_06767at 33.476 kb on - strand, within MPMX19_06767at 33.476 kb on - strand, within MPMX19_06767at 33.476 kb on - strand, within MPMX19_06767at 33.478 kb on + strand, within MPMX19_06767at 33.478 kb on + strand, within MPMX19_06767at 33.478 kb on + strand, within MPMX19_06767at 33.478 kb on + strand, within MPMX19_06767at 33.479 kb on - strand, within MPMX19_06767at 33.479 kb on - strand, within MPMX19_06767at 33.503 kb on - strand, within MPMX19_06767at 33.503 kb on - strand, within MPMX19_06767at 33.503 kb on - strand, within MPMX19_06767at 33.565 kb on + strand, within MPMX19_06767at 33.566 kb on - strand, within MPMX19_06767at 33.647 kb on - strand, within MPMX19_06767at 33.647 kb on - strand, within MPMX19_06767at 33.647 kb on - strand, within MPMX19_06767at 33.736 kb on + strand, within MPMX19_06767at 33.737 kb on - strand, within MPMX19_06767at 33.794 kb on - strand, within MPMX19_06767at 33.811 kb on + strand, within MPMX19_06767at 33.812 kb on - strand, within MPMX19_06767at 33.838 kb on + strand, within MPMX19_06767at 33.838 kb on + strand, within MPMX19_06767at 33.838 kb on + strand, within MPMX19_06767at 33.838 kb on + strand, within MPMX19_06767at 33.839 kb on - strand, within MPMX19_06767at 33.839 kb on - strand, within MPMX19_06767

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Per-strain Table

Position Strand Gene LocusTag Fraction MGL
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31,593 + MPMX19_06765 0.53 -1.3
31,594 - MPMX19_06765 0.53 -1.9
31,594 - MPMX19_06765 0.53 -1.7
32,136 + +0.7
32,136 + +0.4
32,137 - -0.6
32,137 - -1.0
32,137 - -0.1
32,160 + -0.3
32,160 + -0.7
32,160 + -1.5
32,161 - -1.1
32,265 + -1.7
32,265 + -0.7
32,265 + -0.1
32,266 - -0.1
32,435 + MPMX19_06766 0.19 -1.1
33,262 + -0.1
33,262 + +0.5
33,263 - +1.5
33,475 + MPMX19_06767 0.19 +0.6
33,475 + MPMX19_06767 0.19 -1.1
33,475 + MPMX19_06767 0.19 -0.8
33,475 + MPMX19_06767 0.19 -0.7
33,476 - MPMX19_06767 0.19 -0.1
33,476 - MPMX19_06767 0.19 -0.8
33,476 - MPMX19_06767 0.19 -0.2
33,476 - MPMX19_06767 0.19 +0.3
33,476 - MPMX19_06767 0.19 -0.5
33,476 - MPMX19_06767 0.19 -1.3
33,478 + MPMX19_06767 0.19 -0.1
33,478 + MPMX19_06767 0.19 -1.0
33,478 + MPMX19_06767 0.19 -1.9
33,478 + MPMX19_06767 0.19 -0.1
33,479 - MPMX19_06767 0.19 -0.3
33,479 - MPMX19_06767 0.19 +1.2
33,503 - MPMX19_06767 0.21 -0.5
33,503 - MPMX19_06767 0.21 -1.7
33,503 - MPMX19_06767 0.21 -1.6
33,565 + MPMX19_06767 0.25 -0.3
33,566 - MPMX19_06767 0.25 +0.3
33,647 - MPMX19_06767 0.31 -0.7
33,647 - MPMX19_06767 0.31 -0.5
33,647 - MPMX19_06767 0.31 +0.2
33,736 + MPMX19_06767 0.36 +0.2
33,737 - MPMX19_06767 0.36 +0.7
33,794 - MPMX19_06767 0.40 -0.5
33,811 + MPMX19_06767 0.41 +0.6
33,812 - MPMX19_06767 0.41 -0.5
33,838 + MPMX19_06767 0.43 -0.3
33,838 + MPMX19_06767 0.43 +0.2
33,838 + MPMX19_06767 0.43 +0.3
33,838 + MPMX19_06767 0.43 -0.3
33,839 - MPMX19_06767 0.43 -1.4
33,839 - MPMX19_06767 0.43 -2.0

Or see this region's nucleotide sequence