Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04800

Experiment: MGL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04799 and MPMX19_04800 are separated by 3 nucleotidesMPMX19_04800 and MPMX19_04801 are separated by 325 nucleotides MPMX19_04799: MPMX19_04799 - D-inositol-3-phosphate glycosyltransferase, at 200,009 to 201,121 _04799 MPMX19_04800: MPMX19_04800 - hypothetical protein, at 201,125 to 201,718 _04800 MPMX19_04801: MPMX19_04801 - D-inositol-3-phosphate glycosyltransferase, at 202,044 to 203,219 _04801 Position (kb) 201 202Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 200.508 kb on + strand, within MPMX19_04799at 200.508 kb on + strand, within MPMX19_04799at 200.508 kb on + strand, within MPMX19_04799at 200.508 kb on + strand, within MPMX19_04799at 200.509 kb on - strand, within MPMX19_04799at 200.509 kb on - strand, within MPMX19_04799at 200.509 kb on - strand, within MPMX19_04799at 200.838 kb on + strand, within MPMX19_04799at 200.838 kb on + strand, within MPMX19_04799at 200.838 kb on + strand, within MPMX19_04799at 200.838 kb on + strand, within MPMX19_04799at 200.838 kb on + strand, within MPMX19_04799at 200.838 kb on + strand, within MPMX19_04799at 200.838 kb on + strand, within MPMX19_04799at 200.839 kb on - strand, within MPMX19_04799at 200.839 kb on - strand, within MPMX19_04799at 200.839 kb on - strand, within MPMX19_04799at 200.839 kb on - strand, within MPMX19_04799at 200.839 kb on - strand, within MPMX19_04799at 200.839 kb on - strand, within MPMX19_04799at 200.839 kb on - strand, within MPMX19_04799at 200.920 kb on - strand, within MPMX19_04799at 200.920 kb on - strand, within MPMX19_04799at 200.972 kb on + strand, within MPMX19_04799at 200.972 kb on + strand, within MPMX19_04799at 200.973 kb on - strand, within MPMX19_04799at 201.027 kb on + strandat 201.028 kb on - strandat 201.129 kb on + strandat 201.129 kb on + strandat 201.130 kb on - strandat 201.130 kb on - strandat 201.130 kb on - strandat 201.143 kb on + strandat 201.144 kb on - strandat 201.144 kb on - strandat 201.192 kb on + strand, within MPMX19_04800at 201.192 kb on + strand, within MPMX19_04800at 201.252 kb on + strand, within MPMX19_04800at 201.253 kb on - strand, within MPMX19_04800at 201.258 kb on + strand, within MPMX19_04800at 201.304 kb on + strand, within MPMX19_04800at 201.304 kb on + strand, within MPMX19_04800at 201.304 kb on + strand, within MPMX19_04800at 201.305 kb on - strand, within MPMX19_04800at 201.305 kb on - strand, within MPMX19_04800at 201.305 kb on - strand, within MPMX19_04800at 201.305 kb on - strand, within MPMX19_04800at 201.306 kb on + strand, within MPMX19_04800at 201.307 kb on - strand, within MPMX19_04800at 201.345 kb on + strand, within MPMX19_04800at 201.345 kb on + strand, within MPMX19_04800at 201.345 kb on + strand, within MPMX19_04800at 201.345 kb on + strand, within MPMX19_04800at 201.345 kb on + strand, within MPMX19_04800at 201.345 kb on + strand, within MPMX19_04800at 201.345 kb on + strand, within MPMX19_04800at 201.345 kb on + strand, within MPMX19_04800at 201.345 kb on + strand, within MPMX19_04800at 201.346 kb on - strand, within MPMX19_04800at 201.346 kb on - strand, within MPMX19_04800at 201.346 kb on - strand, within MPMX19_04800at 201.346 kb on - strand, within MPMX19_04800at 201.346 kb on - strand, within MPMX19_04800at 201.346 kb on - strand, within MPMX19_04800at 201.346 kb on - strand, within MPMX19_04800at 201.346 kb on - strand, within MPMX19_04800at 201.346 kb on - strand, within MPMX19_04800at 201.346 kb on - strand, within MPMX19_04800at 201.346 kb on - strand, within MPMX19_04800at 201.346 kb on - strand, within MPMX19_04800at 201.346 kb on - strand, within MPMX19_04800at 201.431 kb on - strand, within MPMX19_04800at 201.704 kb on + strandat 201.704 kb on + strandat 201.705 kb on - strandat 201.757 kb on - strandat 201.757 kb on - strandat 201.757 kb on - strandat 201.809 kb on + strandat 201.810 kb on - strandat 201.810 kb on - strandat 201.872 kb on + strandat 201.872 kb on + strandat 201.872 kb on + strandat 201.873 kb on - strandat 201.873 kb on - strandat 201.873 kb on - strandat 201.873 kb on - strandat 201.873 kb on - strandat 201.873 kb on - strandat 201.873 kb on - strandat 201.873 kb on - strandat 201.873 kb on - strandat 201.876 kb on + strandat 201.876 kb on + strandat 201.876 kb on + strandat 201.876 kb on + strandat 201.876 kb on + strandat 201.876 kb on + strandat 201.876 kb on + strandat 201.876 kb on + strandat 201.876 kb on + strandat 201.876 kb on + strandat 201.876 kb on + strandat 201.876 kb on + strandat 201.876 kb on + strandat 201.876 kb on + strandat 201.876 kb on + strandat 201.876 kb on + strandat 201.876 kb on + strandat 201.877 kb on - strandat 201.877 kb on - strandat 201.877 kb on - strandat 201.877 kb on - strandat 201.877 kb on - strandat 201.877 kb on - strandat 201.877 kb on - strandat 201.877 kb on - strandat 201.877 kb on - strandat 201.877 kb on - strandat 201.900 kb on - strandat 201.931 kb on + strandat 201.931 kb on + strandat 202.201 kb on + strand, within MPMX19_04801at 202.201 kb on + strand, within MPMX19_04801at 202.201 kb on + strand, within MPMX19_04801at 202.201 kb on + strand, within MPMX19_04801at 202.201 kb on + strand, within MPMX19_04801at 202.202 kb on - strand, within MPMX19_04801at 202.202 kb on - strand, within MPMX19_04801at 202.202 kb on - strand, within MPMX19_04801at 202.202 kb on - strand, within MPMX19_04801at 202.202 kb on - strand, within MPMX19_04801at 202.202 kb on - strand, within MPMX19_04801at 202.206 kb on + strand, within MPMX19_04801at 202.206 kb on + strand, within MPMX19_04801at 202.206 kb on + strand, within MPMX19_04801at 202.206 kb on + strand, within MPMX19_04801at 202.207 kb on - strand, within MPMX19_04801at 202.207 kb on - strand, within MPMX19_04801at 202.207 kb on - strand, within MPMX19_04801at 202.207 kb on - strand, within MPMX19_04801at 202.207 kb on - strand, within MPMX19_04801at 202.207 kb on - strand, within MPMX19_04801at 202.207 kb on - strand, within MPMX19_04801at 202.207 kb on - strand, within MPMX19_04801at 202.278 kb on + strand, within MPMX19_04801at 202.437 kb on + strand, within MPMX19_04801at 202.437 kb on + strand, within MPMX19_04801at 202.437 kb on + strand, within MPMX19_04801at 202.437 kb on + strand, within MPMX19_04801at 202.437 kb on + strand, within MPMX19_04801at 202.437 kb on + strand, within MPMX19_04801at 202.438 kb on - strand, within MPMX19_04801at 202.479 kb on + strand, within MPMX19_04801at 202.551 kb on + strand, within MPMX19_04801at 202.551 kb on + strand, within MPMX19_04801at 202.551 kb on + strand, within MPMX19_04801at 202.552 kb on - strand, within MPMX19_04801at 202.552 kb on - strand, within MPMX19_04801at 202.552 kb on - strand, within MPMX19_04801at 202.552 kb on - strand, within MPMX19_04801at 202.552 kb on - strand, within MPMX19_04801at 202.552 kb on - strand, within MPMX19_04801at 202.552 kb on - strand, within MPMX19_04801at 202.552 kb on - strand, within MPMX19_04801at 202.552 kb on - strand, within MPMX19_04801at 202.553 kb on + strand, within MPMX19_04801at 202.553 kb on + strand, within MPMX19_04801at 202.553 kb on + strand, within MPMX19_04801at 202.554 kb on - strand, within MPMX19_04801at 202.554 kb on - strand, within MPMX19_04801

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Per-strain Table

Position Strand Gene LocusTag Fraction MGL
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200,508 + MPMX19_04799 0.45 +0.9
200,508 + MPMX19_04799 0.45 -1.4
200,508 + MPMX19_04799 0.45 -0.3
200,508 + MPMX19_04799 0.45 +1.0
200,509 - MPMX19_04799 0.45 -0.0
200,509 - MPMX19_04799 0.45 -0.5
200,509 - MPMX19_04799 0.45 -1.0
200,838 + MPMX19_04799 0.74 +0.9
200,838 + MPMX19_04799 0.74 +0.1
200,838 + MPMX19_04799 0.74 +1.2
200,838 + MPMX19_04799 0.74 +0.2
200,838 + MPMX19_04799 0.74 +1.9
200,838 + MPMX19_04799 0.74 -0.1
200,838 + MPMX19_04799 0.74 +0.5
200,839 - MPMX19_04799 0.75 -0.8
200,839 - MPMX19_04799 0.75 -0.7
200,839 - MPMX19_04799 0.75 -0.6
200,839 - MPMX19_04799 0.75 -1.4
200,839 - MPMX19_04799 0.75 -1.5
200,839 - MPMX19_04799 0.75 +0.7
200,839 - MPMX19_04799 0.75 +0.9
200,920 - MPMX19_04799 0.82 -0.1
200,920 - MPMX19_04799 0.82 -0.1
200,972 + MPMX19_04799 0.87 -0.3
200,972 + MPMX19_04799 0.87 -0.2
200,973 - MPMX19_04799 0.87 -1.1
201,027 + -0.7
201,028 - -2.1
201,129 + -0.1
201,129 + +0.8
201,130 - -0.6
201,130 - -1.4
201,130 - -1.0
201,143 + -0.4
201,144 - -1.3
201,144 - -0.1
201,192 + MPMX19_04800 0.11 -0.8
201,192 + MPMX19_04800 0.11 -0.1
201,252 + MPMX19_04800 0.21 -1.3
201,253 - MPMX19_04800 0.22 -0.6
201,258 + MPMX19_04800 0.22 -0.5
201,304 + MPMX19_04800 0.30 -0.1
201,304 + MPMX19_04800 0.30 +0.7
201,304 + MPMX19_04800 0.30 -1.7
201,305 - MPMX19_04800 0.30 -1.0
201,305 - MPMX19_04800 0.30 +0.6
201,305 - MPMX19_04800 0.30 +0.5
201,305 - MPMX19_04800 0.30 -1.3
201,306 + MPMX19_04800 0.30 -0.8
201,307 - MPMX19_04800 0.31 -2.1
201,345 + MPMX19_04800 0.37 +0.5
201,345 + MPMX19_04800 0.37 -1.5
201,345 + MPMX19_04800 0.37 -0.5
201,345 + MPMX19_04800 0.37 +0.6
201,345 + MPMX19_04800 0.37 -0.1
201,345 + MPMX19_04800 0.37 +1.8
201,345 + MPMX19_04800 0.37 +1.1
201,345 + MPMX19_04800 0.37 -1.8
201,345 + MPMX19_04800 0.37 +1.2
201,346 - MPMX19_04800 0.37 -0.7
201,346 - MPMX19_04800 0.37 -0.0
201,346 - MPMX19_04800 0.37 +0.3
201,346 - MPMX19_04800 0.37 -1.0
201,346 - MPMX19_04800 0.37 -0.1
201,346 - MPMX19_04800 0.37 +0.9
201,346 - MPMX19_04800 0.37 -0.4
201,346 - MPMX19_04800 0.37 -0.8
201,346 - MPMX19_04800 0.37 +0.8
201,346 - MPMX19_04800 0.37 +1.3
201,346 - MPMX19_04800 0.37 -1.6
201,346 - MPMX19_04800 0.37 +0.4
201,346 - MPMX19_04800 0.37 -0.5
201,431 - MPMX19_04800 0.52 +1.5
201,704 + -1.3
201,704 + -0.1
201,705 - +0.6
201,757 - -1.2
201,757 - -0.8
201,757 - -0.5
201,809 + -0.4
201,810 - -0.7
201,810 - -0.3
201,872 + -0.4
201,872 + +0.5
201,872 + -0.9
201,873 - -0.4
201,873 - -1.0
201,873 - +0.7
201,873 - +0.4
201,873 - +0.8
201,873 - +0.2
201,873 - -1.3
201,873 - -0.5
201,873 - +0.5
201,876 + +0.9
201,876 + +0.5
201,876 + -0.7
201,876 + -1.2
201,876 + +0.0
201,876 + -1.5
201,876 + -1.5
201,876 + -0.1
201,876 + -0.7
201,876 + -1.5
201,876 + -0.8
201,876 + -0.9
201,876 + -3.1
201,876 + -0.7
201,876 + -2.0
201,876 + +0.4
201,876 + -1.7
201,877 - -0.7
201,877 - -1.5
201,877 - -0.7
201,877 - -0.7
201,877 - -0.4
201,877 - +3.1
201,877 - -0.8
201,877 - -0.5
201,877 - +1.0
201,877 - +0.2
201,900 - -0.3
201,931 + +0.9
201,931 + -0.7
202,201 + MPMX19_04801 0.13 +0.2
202,201 + MPMX19_04801 0.13 -1.8
202,201 + MPMX19_04801 0.13 +0.2
202,201 + MPMX19_04801 0.13 -1.7
202,201 + MPMX19_04801 0.13 -2.1
202,202 - MPMX19_04801 0.13 -1.7
202,202 - MPMX19_04801 0.13 +1.5
202,202 - MPMX19_04801 0.13 -0.3
202,202 - MPMX19_04801 0.13 +1.1
202,202 - MPMX19_04801 0.13 +0.9
202,202 - MPMX19_04801 0.13 -0.3
202,206 + MPMX19_04801 0.14 -0.7
202,206 + MPMX19_04801 0.14 +0.5
202,206 + MPMX19_04801 0.14 +0.3
202,206 + MPMX19_04801 0.14 -0.7
202,207 - MPMX19_04801 0.14 -0.7
202,207 - MPMX19_04801 0.14 -0.3
202,207 - MPMX19_04801 0.14 -0.2
202,207 - MPMX19_04801 0.14 -1.4
202,207 - MPMX19_04801 0.14 -1.8
202,207 - MPMX19_04801 0.14 +0.2
202,207 - MPMX19_04801 0.14 -0.8
202,207 - MPMX19_04801 0.14 +0.2
202,278 + MPMX19_04801 0.20 +0.0
202,437 + MPMX19_04801 0.33 -0.7
202,437 + MPMX19_04801 0.33 -0.2
202,437 + MPMX19_04801 0.33 +0.4
202,437 + MPMX19_04801 0.33 -0.1
202,437 + MPMX19_04801 0.33 -1.4
202,437 + MPMX19_04801 0.33 -0.8
202,438 - MPMX19_04801 0.34 -0.5
202,479 + MPMX19_04801 0.37 -1.0
202,551 + MPMX19_04801 0.43 -0.2
202,551 + MPMX19_04801 0.43 +0.2
202,551 + MPMX19_04801 0.43 -0.2
202,552 - MPMX19_04801 0.43 +0.2
202,552 - MPMX19_04801 0.43 -0.5
202,552 - MPMX19_04801 0.43 -0.1
202,552 - MPMX19_04801 0.43 -0.1
202,552 - MPMX19_04801 0.43 -0.7
202,552 - MPMX19_04801 0.43 +0.3
202,552 - MPMX19_04801 0.43 -1.2
202,552 - MPMX19_04801 0.43 -0.8
202,552 - MPMX19_04801 0.43 +2.2
202,553 + MPMX19_04801 0.43 -0.3
202,553 + MPMX19_04801 0.43 +0.0
202,553 + MPMX19_04801 0.43 -1.1
202,554 - MPMX19_04801 0.43 -1.4
202,554 - MPMX19_04801 0.43 -0.8

Or see this region's nucleotide sequence