Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04740

Experiment: MGL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04738 and MPMX19_04739 overlap by 19 nucleotidesMPMX19_04739 and MPMX19_04740 are separated by 50 nucleotidesMPMX19_04740 and MPMX19_04741 are separated by 346 nucleotides MPMX19_04738: MPMX19_04738 - hypothetical protein, at 128,663 to 129,841 _04738 MPMX19_04739: MPMX19_04739 - NAD(P)-dependent methylenetetrahydromethanopterin dehydrogenase, at 129,823 to 130,725 _04739 MPMX19_04740: MPMX19_04740 - hypothetical protein, at 130,776 to 131,810 _04740 MPMX19_04741: MPMX19_04741 - Formyltransferase/hydrolase complex Fhc subunit B, at 132,157 to 133,353 _04741 Position (kb) 130 131 132Strain fitness (log2 ratio) -2 -1 0 1at 129.881 kb on + strandat 129.881 kb on + strandat 129.881 kb on + strandat 129.881 kb on + strandat 129.882 kb on - strandat 129.882 kb on - strandat 129.882 kb on - strandat 129.882 kb on - strandat 130.220 kb on + strand, within MPMX19_04739at 130.221 kb on - strand, within MPMX19_04739at 130.221 kb on - strand, within MPMX19_04739at 130.424 kb on + strand, within MPMX19_04739at 130.424 kb on + strand, within MPMX19_04739at 130.424 kb on + strand, within MPMX19_04739at 130.425 kb on - strand, within MPMX19_04739at 130.425 kb on - strand, within MPMX19_04739at 130.425 kb on - strand, within MPMX19_04739at 130.425 kb on - strand, within MPMX19_04739at 130.425 kb on - strand, within MPMX19_04739at 130.622 kb on + strand, within MPMX19_04739at 130.622 kb on + strand, within MPMX19_04739at 130.710 kb on + strandat 130.769 kb on + strandat 130.774 kb on - strandat 131.186 kb on - strand, within MPMX19_04740at 131.186 kb on - strand, within MPMX19_04740at 131.186 kb on - strand, within MPMX19_04740at 131.596 kb on + strand, within MPMX19_04740at 131.596 kb on + strand, within MPMX19_04740at 131.596 kb on + strand, within MPMX19_04740at 131.597 kb on - strand, within MPMX19_04740at 131.597 kb on - strand, within MPMX19_04740at 131.597 kb on - strand, within MPMX19_04740at 131.597 kb on - strand, within MPMX19_04740at 131.597 kb on - strand, within MPMX19_04740at 131.597 kb on - strand, within MPMX19_04740at 131.815 kb on + strandat 131.815 kb on + strandat 131.816 kb on - strandat 131.816 kb on - strandat 131.816 kb on - strandat 131.816 kb on - strandat 131.853 kb on + strandat 131.858 kb on - strandat 131.858 kb on - strandat 131.875 kb on + strandat 131.911 kb on - strandat 131.990 kb on - strandat 131.993 kb on + strandat 132.031 kb on + strandat 132.031 kb on + strandat 132.032 kb on - strandat 132.043 kb on + strandat 132.044 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MGL
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129,881 + -0.3
129,881 + +0.5
129,881 + -0.3
129,881 + -1.2
129,882 - -1.9
129,882 - -0.9
129,882 - +0.9
129,882 - -0.2
130,220 + MPMX19_04739 0.44 +1.1
130,221 - MPMX19_04739 0.44 -1.1
130,221 - MPMX19_04739 0.44 -1.5
130,424 + MPMX19_04739 0.67 -0.7
130,424 + MPMX19_04739 0.67 -0.3
130,424 + MPMX19_04739 0.67 +0.1
130,425 - MPMX19_04739 0.67 -1.1
130,425 - MPMX19_04739 0.67 -2.3
130,425 - MPMX19_04739 0.67 +0.6
130,425 - MPMX19_04739 0.67 -0.5
130,425 - MPMX19_04739 0.67 -1.8
130,622 + MPMX19_04739 0.88 -1.2
130,622 + MPMX19_04739 0.88 +1.1
130,710 + -0.2
130,769 + -0.1
130,774 - +0.6
131,186 - MPMX19_04740 0.40 -0.9
131,186 - MPMX19_04740 0.40 -1.2
131,186 - MPMX19_04740 0.40 -0.3
131,596 + MPMX19_04740 0.79 -0.7
131,596 + MPMX19_04740 0.79 +0.3
131,596 + MPMX19_04740 0.79 -0.9
131,597 - MPMX19_04740 0.79 -0.4
131,597 - MPMX19_04740 0.79 -1.3
131,597 - MPMX19_04740 0.79 -1.5
131,597 - MPMX19_04740 0.79 -0.1
131,597 - MPMX19_04740 0.79 -1.2
131,597 - MPMX19_04740 0.79 -1.8
131,815 + -1.2
131,815 + -1.2
131,816 - -1.2
131,816 - -0.7
131,816 - -0.1
131,816 - +0.9
131,853 + -1.1
131,858 - -0.3
131,858 - -0.3
131,875 + +0.1
131,911 - -1.1
131,990 - -0.1
131,993 + +1.5
132,031 + +1.0
132,031 + -1.2
132,032 - +0.4
132,043 + +1.2
132,044 - -0.5

Or see this region's nucleotide sequence