Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_04492

Experiment: MGL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_04491 and MPMX19_04492 are separated by 233 nucleotidesMPMX19_04492 and MPMX19_04493 are separated by 215 nucleotides MPMX19_04491: MPMX19_04491 - Sensor histidine kinase RcsC, at 857,559 to 860,075 _04491 MPMX19_04492: MPMX19_04492 - hypothetical protein, at 860,309 to 860,551 _04492 MPMX19_04493: MPMX19_04493 - PCP degradation transcriptional activation protein, at 860,767 to 861,780 _04493 Position (kb) 860 861Strain fitness (log2 ratio) -3 -2 -1 0 1at 859.460 kb on - strand, within MPMX19_04491at 859.460 kb on - strand, within MPMX19_04491at 859.711 kb on + strand, within MPMX19_04491at 859.712 kb on - strand, within MPMX19_04491at 859.712 kb on - strand, within MPMX19_04491at 859.712 kb on - strand, within MPMX19_04491at 859.782 kb on + strand, within MPMX19_04491at 859.782 kb on + strand, within MPMX19_04491at 859.782 kb on + strand, within MPMX19_04491at 859.783 kb on - strand, within MPMX19_04491at 859.783 kb on - strand, within MPMX19_04491at 859.783 kb on - strand, within MPMX19_04491at 859.783 kb on - strand, within MPMX19_04491at 859.903 kb on + strandat 859.903 kb on + strandat 859.903 kb on + strandat 859.903 kb on + strandat 859.903 kb on + strandat 859.903 kb on + strandat 859.903 kb on + strandat 859.904 kb on - strandat 859.904 kb on - strandat 859.904 kb on - strandat 859.904 kb on - strandat 859.904 kb on - strandat 859.904 kb on - strandat 859.904 kb on - strandat 859.915 kb on + strandat 859.915 kb on + strandat 859.915 kb on + strandat 859.915 kb on + strandat 859.915 kb on + strandat 859.916 kb on - strandat 859.916 kb on - strandat 859.916 kb on - strandat 859.916 kb on - strandat 859.916 kb on - strandat 859.916 kb on - strandat 860.196 kb on + strandat 860.196 kb on + strandat 860.196 kb on + strandat 860.196 kb on + strandat 860.196 kb on + strandat 860.197 kb on - strandat 860.197 kb on - strandat 860.197 kb on - strandat 860.197 kb on - strandat 860.197 kb on - strandat 860.197 kb on - strandat 860.198 kb on + strandat 860.198 kb on + strandat 860.198 kb on + strandat 860.199 kb on - strandat 860.349 kb on + strand, within MPMX19_04492at 860.349 kb on + strand, within MPMX19_04492at 860.349 kb on + strand, within MPMX19_04492at 860.349 kb on + strand, within MPMX19_04492at 860.349 kb on + strand, within MPMX19_04492at 860.350 kb on - strand, within MPMX19_04492at 860.350 kb on - strand, within MPMX19_04492at 860.350 kb on - strand, within MPMX19_04492at 860.528 kb on + strandat 860.528 kb on + strandat 860.529 kb on - strandat 860.529 kb on - strandat 860.529 kb on - strandat 860.558 kb on + strandat 860.558 kb on + strandat 860.558 kb on + strandat 860.558 kb on + strandat 860.610 kb on + strandat 860.610 kb on + strandat 860.610 kb on + strandat 860.610 kb on + strandat 860.610 kb on + strandat 860.610 kb on + strandat 860.610 kb on + strandat 860.611 kb on - strandat 860.611 kb on - strandat 860.676 kb on + strandat 860.676 kb on + strandat 860.676 kb on + strandat 860.677 kb on - strandat 861.097 kb on + strand, within MPMX19_04493at 861.097 kb on + strand, within MPMX19_04493at 861.097 kb on + strand, within MPMX19_04493at 861.097 kb on + strand, within MPMX19_04493at 861.097 kb on + strand, within MPMX19_04493at 861.098 kb on - strand, within MPMX19_04493at 861.098 kb on - strand, within MPMX19_04493at 861.098 kb on - strand, within MPMX19_04493at 861.434 kb on + strand, within MPMX19_04493at 861.434 kb on + strand, within MPMX19_04493at 861.434 kb on + strand, within MPMX19_04493at 861.435 kb on - strand, within MPMX19_04493at 861.526 kb on + strand, within MPMX19_04493at 861.526 kb on + strand, within MPMX19_04493at 861.526 kb on + strand, within MPMX19_04493at 861.526 kb on + strand, within MPMX19_04493at 861.526 kb on + strand, within MPMX19_04493at 861.527 kb on - strand, within MPMX19_04493at 861.527 kb on - strand, within MPMX19_04493at 861.527 kb on - strand, within MPMX19_04493at 861.527 kb on - strand, within MPMX19_04493at 861.527 kb on - strand, within MPMX19_04493

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Per-strain Table

Position Strand Gene LocusTag Fraction MGL
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859,460 - MPMX19_04491 0.76 -0.5
859,460 - MPMX19_04491 0.76 -0.7
859,711 + MPMX19_04491 0.85 +0.9
859,712 - MPMX19_04491 0.86 -0.2
859,712 - MPMX19_04491 0.86 -0.8
859,712 - MPMX19_04491 0.86 -2.0
859,782 + MPMX19_04491 0.88 -0.1
859,782 + MPMX19_04491 0.88 +1.1
859,782 + MPMX19_04491 0.88 +0.5
859,783 - MPMX19_04491 0.88 -0.4
859,783 - MPMX19_04491 0.88 -0.8
859,783 - MPMX19_04491 0.88 -1.2
859,783 - MPMX19_04491 0.88 -2.5
859,903 + -0.5
859,903 + -0.4
859,903 + -2.2
859,903 + -0.2
859,903 + -0.6
859,903 + -1.7
859,903 + -0.8
859,904 - -0.7
859,904 - -0.1
859,904 - +0.0
859,904 - -0.5
859,904 - -1.0
859,904 - -3.2
859,904 - -0.8
859,915 + -0.2
859,915 + -2.6
859,915 + -1.1
859,915 + -0.4
859,915 + -1.7
859,916 - +0.3
859,916 - -0.1
859,916 - -2.0
859,916 - +0.8
859,916 - -1.7
859,916 - -1.5
860,196 + -2.2
860,196 + -0.6
860,196 + -1.5
860,196 + -1.0
860,196 + -0.7
860,197 - -1.9
860,197 - -1.3
860,197 - -0.8
860,197 - +0.3
860,197 - +0.0
860,197 - +0.6
860,198 + +0.6
860,198 + +0.2
860,198 + -1.4
860,199 - +0.1
860,349 + MPMX19_04492 0.16 +0.1
860,349 + MPMX19_04492 0.16 -0.1
860,349 + MPMX19_04492 0.16 +0.3
860,349 + MPMX19_04492 0.16 -0.4
860,349 + MPMX19_04492 0.16 -1.2
860,350 - MPMX19_04492 0.17 +0.0
860,350 - MPMX19_04492 0.17 -0.7
860,350 - MPMX19_04492 0.17 -1.0
860,528 + -0.1
860,528 + -1.7
860,529 - -1.0
860,529 - -0.3
860,529 - -0.7
860,558 + +0.3
860,558 + -0.1
860,558 + -0.2
860,558 + -0.5
860,610 + -0.7
860,610 + +0.0
860,610 + -0.2
860,610 + -0.1
860,610 + -0.4
860,610 + -0.7
860,610 + +1.0
860,611 - +0.3
860,611 - -1.7
860,676 + -1.2
860,676 + +0.6
860,676 + -1.0
860,677 - -0.7
861,097 + MPMX19_04493 0.33 -1.1
861,097 + MPMX19_04493 0.33 +0.0
861,097 + MPMX19_04493 0.33 -1.1
861,097 + MPMX19_04493 0.33 -0.6
861,097 + MPMX19_04493 0.33 -0.7
861,098 - MPMX19_04493 0.33 -1.9
861,098 - MPMX19_04493 0.33 -1.3
861,098 - MPMX19_04493 0.33 +0.9
861,434 + MPMX19_04493 0.66 -0.2
861,434 + MPMX19_04493 0.66 +0.0
861,434 + MPMX19_04493 0.66 -0.1
861,435 - MPMX19_04493 0.66 +0.2
861,526 + MPMX19_04493 0.75 -1.3
861,526 + MPMX19_04493 0.75 -0.5
861,526 + MPMX19_04493 0.75 +0.8
861,526 + MPMX19_04493 0.75 -0.1
861,526 + MPMX19_04493 0.75 -0.7
861,527 - MPMX19_04493 0.75 -1.8
861,527 - MPMX19_04493 0.75 -1.0
861,527 - MPMX19_04493 0.75 +0.6
861,527 - MPMX19_04493 0.75 -1.9
861,527 - MPMX19_04493 0.75 -0.1

Or see this region's nucleotide sequence