Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03895

Experiment: MGL

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX19_03894 and MPMX19_03895 overlap by 29 nucleotidesMPMX19_03895 and MPMX19_03896 overlap by 4 nucleotides MPMX19_03894: MPMX19_03894 - Cytosine deaminase, at 168,200 to 169,435 _03894 MPMX19_03895: MPMX19_03895 - hypothetical protein, at 169,407 to 169,727 _03895 MPMX19_03896: MPMX19_03896 - hypothetical protein, at 169,724 to 171,379 _03896 Position (kb) 169 170Strain fitness (log2 ratio) -2 -1 0 1 2 3at 168.500 kb on + strand, within MPMX19_03894at 168.501 kb on - strand, within MPMX19_03894at 168.501 kb on - strand, within MPMX19_03894at 168.501 kb on - strand, within MPMX19_03894at 168.553 kb on + strand, within MPMX19_03894at 168.553 kb on + strand, within MPMX19_03894at 168.553 kb on + strand, within MPMX19_03894at 168.553 kb on + strand, within MPMX19_03894at 168.553 kb on + strand, within MPMX19_03894at 168.553 kb on + strand, within MPMX19_03894at 168.554 kb on - strand, within MPMX19_03894at 168.554 kb on - strand, within MPMX19_03894at 168.554 kb on - strand, within MPMX19_03894at 168.554 kb on - strand, within MPMX19_03894at 168.554 kb on - strand, within MPMX19_03894at 168.554 kb on - strand, within MPMX19_03894at 168.554 kb on - strand, within MPMX19_03894at 168.554 kb on - strand, within MPMX19_03894at 168.554 kb on - strand, within MPMX19_03894at 168.554 kb on - strand, within MPMX19_03894at 168.755 kb on + strand, within MPMX19_03894at 168.755 kb on + strand, within MPMX19_03894at 168.755 kb on + strand, within MPMX19_03894at 168.755 kb on + strand, within MPMX19_03894at 168.755 kb on + strand, within MPMX19_03894at 168.756 kb on - strand, within MPMX19_03894at 168.756 kb on - strand, within MPMX19_03894at 168.756 kb on - strand, within MPMX19_03894at 168.756 kb on - strand, within MPMX19_03894at 169.034 kb on + strand, within MPMX19_03894at 169.034 kb on + strand, within MPMX19_03894at 169.035 kb on - strand, within MPMX19_03894at 169.035 kb on - strand, within MPMX19_03894at 169.035 kb on - strand, within MPMX19_03894at 169.193 kb on + strand, within MPMX19_03894at 169.193 kb on + strand, within MPMX19_03894at 169.193 kb on + strand, within MPMX19_03894at 169.194 kb on - strand, within MPMX19_03894at 169.194 kb on - strand, within MPMX19_03894at 169.194 kb on - strand, within MPMX19_03894at 169.194 kb on - strand, within MPMX19_03894at 169.252 kb on + strand, within MPMX19_03894at 169.252 kb on + strand, within MPMX19_03894at 169.252 kb on + strand, within MPMX19_03894at 169.252 kb on + strand, within MPMX19_03894at 169.252 kb on + strand, within MPMX19_03894at 169.252 kb on + strand, within MPMX19_03894at 169.253 kb on - strand, within MPMX19_03894at 169.253 kb on - strand, within MPMX19_03894at 169.253 kb on - strand, within MPMX19_03894at 169.253 kb on - strand, within MPMX19_03894at 169.253 kb on - strand, within MPMX19_03894at 169.253 kb on - strand, within MPMX19_03894at 169.253 kb on - strand, within MPMX19_03894at 169.253 kb on - strand, within MPMX19_03894at 169.253 kb on - strand, within MPMX19_03894at 169.362 kb on + strandat 169.363 kb on - strandat 169.363 kb on - strandat 169.363 kb on - strandat 169.363 kb on - strandat 169.433 kb on + strandat 169.434 kb on - strandat 170.234 kb on + strand, within MPMX19_03896at 170.234 kb on + strand, within MPMX19_03896at 170.235 kb on - strand, within MPMX19_03896at 170.235 kb on - strand, within MPMX19_03896at 170.283 kb on + strand, within MPMX19_03896at 170.283 kb on + strand, within MPMX19_03896at 170.283 kb on + strand, within MPMX19_03896at 170.284 kb on - strand, within MPMX19_03896at 170.284 kb on - strand, within MPMX19_03896at 170.284 kb on - strand, within MPMX19_03896at 170.284 kb on - strand, within MPMX19_03896at 170.284 kb on - strand, within MPMX19_03896at 170.284 kb on - strand, within MPMX19_03896at 170.331 kb on + strand, within MPMX19_03896at 170.331 kb on + strand, within MPMX19_03896at 170.331 kb on + strand, within MPMX19_03896at 170.331 kb on + strand, within MPMX19_03896at 170.331 kb on + strand, within MPMX19_03896at 170.331 kb on + strand, within MPMX19_03896at 170.331 kb on + strand, within MPMX19_03896at 170.331 kb on + strand, within MPMX19_03896at 170.331 kb on + strand, within MPMX19_03896at 170.331 kb on + strand, within MPMX19_03896at 170.331 kb on + strand, within MPMX19_03896at 170.332 kb on - strand, within MPMX19_03896at 170.332 kb on - strand, within MPMX19_03896at 170.332 kb on - strand, within MPMX19_03896at 170.332 kb on - strand, within MPMX19_03896at 170.332 kb on - strand, within MPMX19_03896at 170.332 kb on - strand, within MPMX19_03896at 170.332 kb on - strand, within MPMX19_03896at 170.332 kb on - strand, within MPMX19_03896at 170.332 kb on - strand, within MPMX19_03896at 170.415 kb on + strand, within MPMX19_03896at 170.415 kb on + strand, within MPMX19_03896at 170.415 kb on + strand, within MPMX19_03896at 170.415 kb on + strand, within MPMX19_03896at 170.415 kb on + strand, within MPMX19_03896at 170.415 kb on + strand, within MPMX19_03896at 170.415 kb on + strand, within MPMX19_03896at 170.415 kb on + strand, within MPMX19_03896at 170.415 kb on + strand, within MPMX19_03896at 170.416 kb on - strand, within MPMX19_03896at 170.416 kb on - strand, within MPMX19_03896at 170.416 kb on - strand, within MPMX19_03896at 170.416 kb on - strand, within MPMX19_03896at 170.416 kb on - strand, within MPMX19_03896at 170.416 kb on - strand, within MPMX19_03896at 170.416 kb on - strand, within MPMX19_03896at 170.416 kb on - strand, within MPMX19_03896at 170.416 kb on - strand, within MPMX19_03896at 170.416 kb on - strand, within MPMX19_03896at 170.679 kb on + strand, within MPMX19_03896at 170.679 kb on + strand, within MPMX19_03896at 170.679 kb on + strand, within MPMX19_03896at 170.679 kb on + strand, within MPMX19_03896at 170.679 kb on + strand, within MPMX19_03896at 170.679 kb on + strand, within MPMX19_03896at 170.679 kb on + strand, within MPMX19_03896at 170.679 kb on + strand, within MPMX19_03896at 170.679 kb on + strand, within MPMX19_03896at 170.679 kb on + strand, within MPMX19_03896at 170.679 kb on + strand, within MPMX19_03896at 170.679 kb on + strand, within MPMX19_03896at 170.679 kb on + strand, within MPMX19_03896at 170.679 kb on + strand, within MPMX19_03896at 170.679 kb on + strand, within MPMX19_03896at 170.680 kb on - strand, within MPMX19_03896at 170.680 kb on - strand, within MPMX19_03896at 170.680 kb on - strand, within MPMX19_03896at 170.680 kb on - strand, within MPMX19_03896at 170.680 kb on - strand, within MPMX19_03896at 170.680 kb on - strand, within MPMX19_03896at 170.680 kb on - strand, within MPMX19_03896at 170.680 kb on - strand, within MPMX19_03896at 170.680 kb on - strand, within MPMX19_03896at 170.680 kb on - strand, within MPMX19_03896at 170.680 kb on - strand, within MPMX19_03896at 170.680 kb on - strand, within MPMX19_03896at 170.680 kb on - strand, within MPMX19_03896at 170.709 kb on + strand, within MPMX19_03896at 170.709 kb on + strand, within MPMX19_03896at 170.709 kb on + strand, within MPMX19_03896at 170.709 kb on + strand, within MPMX19_03896at 170.710 kb on - strand, within MPMX19_03896at 170.710 kb on - strand, within MPMX19_03896at 170.710 kb on - strand, within MPMX19_03896at 170.710 kb on - strand, within MPMX19_03896

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MGL
remove
168,500 + MPMX19_03894 0.24 +0.1
168,501 - MPMX19_03894 0.24 -0.3
168,501 - MPMX19_03894 0.24 -0.0
168,501 - MPMX19_03894 0.24 -0.4
168,553 + MPMX19_03894 0.29 -1.3
168,553 + MPMX19_03894 0.29 -1.0
168,553 + MPMX19_03894 0.29 +1.8
168,553 + MPMX19_03894 0.29 -0.1
168,553 + MPMX19_03894 0.29 +0.0
168,553 + MPMX19_03894 0.29 -2.4
168,554 - MPMX19_03894 0.29 -1.2
168,554 - MPMX19_03894 0.29 -0.4
168,554 - MPMX19_03894 0.29 +0.1
168,554 - MPMX19_03894 0.29 -0.4
168,554 - MPMX19_03894 0.29 -0.2
168,554 - MPMX19_03894 0.29 +0.1
168,554 - MPMX19_03894 0.29 -1.5
168,554 - MPMX19_03894 0.29 -1.9
168,554 - MPMX19_03894 0.29 -1.8
168,554 - MPMX19_03894 0.29 -0.0
168,755 + MPMX19_03894 0.45 -0.2
168,755 + MPMX19_03894 0.45 -0.6
168,755 + MPMX19_03894 0.45 -0.3
168,755 + MPMX19_03894 0.45 +1.0
168,755 + MPMX19_03894 0.45 +0.8
168,756 - MPMX19_03894 0.45 -0.6
168,756 - MPMX19_03894 0.45 -0.7
168,756 - MPMX19_03894 0.45 -0.6
168,756 - MPMX19_03894 0.45 +2.8
169,034 + MPMX19_03894 0.67 +0.1
169,034 + MPMX19_03894 0.67 -0.2
169,035 - MPMX19_03894 0.68 -0.2
169,035 - MPMX19_03894 0.68 +0.3
169,035 - MPMX19_03894 0.68 -0.4
169,193 + MPMX19_03894 0.80 -0.8
169,193 + MPMX19_03894 0.80 +1.8
169,193 + MPMX19_03894 0.80 +0.4
169,194 - MPMX19_03894 0.80 -0.9
169,194 - MPMX19_03894 0.80 -1.3
169,194 - MPMX19_03894 0.80 -0.3
169,194 - MPMX19_03894 0.80 +1.4
169,252 + MPMX19_03894 0.85 -0.4
169,252 + MPMX19_03894 0.85 -0.6
169,252 + MPMX19_03894 0.85 -1.1
169,252 + MPMX19_03894 0.85 -0.9
169,252 + MPMX19_03894 0.85 +0.4
169,252 + MPMX19_03894 0.85 +0.1
169,253 - MPMX19_03894 0.85 -1.2
169,253 - MPMX19_03894 0.85 -0.6
169,253 - MPMX19_03894 0.85 +0.2
169,253 - MPMX19_03894 0.85 +1.4
169,253 - MPMX19_03894 0.85 -2.3
169,253 - MPMX19_03894 0.85 -0.2
169,253 - MPMX19_03894 0.85 -0.4
169,253 - MPMX19_03894 0.85 -0.6
169,253 - MPMX19_03894 0.85 -1.7
169,362 + +0.4
169,363 - +0.2
169,363 - -1.4
169,363 - -0.1
169,363 - -0.8
169,433 + +0.2
169,434 - -1.3
170,234 + MPMX19_03896 0.31 -0.6
170,234 + MPMX19_03896 0.31 +0.6
170,235 - MPMX19_03896 0.31 +0.1
170,235 - MPMX19_03896 0.31 -1.1
170,283 + MPMX19_03896 0.34 -1.2
170,283 + MPMX19_03896 0.34 +0.4
170,283 + MPMX19_03896 0.34 -1.7
170,284 - MPMX19_03896 0.34 +1.2
170,284 - MPMX19_03896 0.34 -0.2
170,284 - MPMX19_03896 0.34 -1.1
170,284 - MPMX19_03896 0.34 +0.7
170,284 - MPMX19_03896 0.34 -0.4
170,284 - MPMX19_03896 0.34 -0.2
170,331 + MPMX19_03896 0.37 -0.6
170,331 + MPMX19_03896 0.37 +0.6
170,331 + MPMX19_03896 0.37 -0.8
170,331 + MPMX19_03896 0.37 -1.0
170,331 + MPMX19_03896 0.37 +0.8
170,331 + MPMX19_03896 0.37 -0.0
170,331 + MPMX19_03896 0.37 -1.7
170,331 + MPMX19_03896 0.37 -1.3
170,331 + MPMX19_03896 0.37 -1.3
170,331 + MPMX19_03896 0.37 -1.4
170,331 + MPMX19_03896 0.37 -1.3
170,332 - MPMX19_03896 0.37 +1.4
170,332 - MPMX19_03896 0.37 -0.4
170,332 - MPMX19_03896 0.37 -1.1
170,332 - MPMX19_03896 0.37 -0.4
170,332 - MPMX19_03896 0.37 -0.4
170,332 - MPMX19_03896 0.37 +0.2
170,332 - MPMX19_03896 0.37 -1.5
170,332 - MPMX19_03896 0.37 -0.6
170,332 - MPMX19_03896 0.37 -1.8
170,415 + MPMX19_03896 0.42 -0.6
170,415 + MPMX19_03896 0.42 +0.4
170,415 + MPMX19_03896 0.42 -2.7
170,415 + MPMX19_03896 0.42 +0.6
170,415 + MPMX19_03896 0.42 -1.8
170,415 + MPMX19_03896 0.42 -0.2
170,415 + MPMX19_03896 0.42 -0.6
170,415 + MPMX19_03896 0.42 -1.9
170,415 + MPMX19_03896 0.42 -0.7
170,416 - MPMX19_03896 0.42 +0.1
170,416 - MPMX19_03896 0.42 -0.9
170,416 - MPMX19_03896 0.42 +0.1
170,416 - MPMX19_03896 0.42 -1.8
170,416 - MPMX19_03896 0.42 -1.1
170,416 - MPMX19_03896 0.42 -1.6
170,416 - MPMX19_03896 0.42 -0.6
170,416 - MPMX19_03896 0.42 -1.3
170,416 - MPMX19_03896 0.42 -0.0
170,416 - MPMX19_03896 0.42 -0.9
170,679 + MPMX19_03896 0.58 -0.4
170,679 + MPMX19_03896 0.58 -0.2
170,679 + MPMX19_03896 0.58 -0.2
170,679 + MPMX19_03896 0.58 -0.8
170,679 + MPMX19_03896 0.58 -1.9
170,679 + MPMX19_03896 0.58 -0.8
170,679 + MPMX19_03896 0.58 -1.4
170,679 + MPMX19_03896 0.58 -0.9
170,679 + MPMX19_03896 0.58 +0.7
170,679 + MPMX19_03896 0.58 -0.1
170,679 + MPMX19_03896 0.58 +1.4
170,679 + MPMX19_03896 0.58 +0.5
170,679 + MPMX19_03896 0.58 +0.4
170,679 + MPMX19_03896 0.58 -0.9
170,679 + MPMX19_03896 0.58 -0.9
170,680 - MPMX19_03896 0.58 +0.4
170,680 - MPMX19_03896 0.58 -0.7
170,680 - MPMX19_03896 0.58 +0.1
170,680 - MPMX19_03896 0.58 +0.8
170,680 - MPMX19_03896 0.58 -0.9
170,680 - MPMX19_03896 0.58 -1.4
170,680 - MPMX19_03896 0.58 -0.4
170,680 - MPMX19_03896 0.58 -0.8
170,680 - MPMX19_03896 0.58 -1.5
170,680 - MPMX19_03896 0.58 -0.3
170,680 - MPMX19_03896 0.58 -0.4
170,680 - MPMX19_03896 0.58 -1.2
170,680 - MPMX19_03896 0.58 +0.8
170,709 + MPMX19_03896 0.59 -1.1
170,709 + MPMX19_03896 0.59 -0.2
170,709 + MPMX19_03896 0.59 -0.9
170,709 + MPMX19_03896 0.59 -1.1
170,710 - MPMX19_03896 0.60 -1.2
170,710 - MPMX19_03896 0.60 -1.9
170,710 - MPMX19_03896 0.60 -0.9
170,710 - MPMX19_03896 0.60 -1.4

Or see this region's nucleotide sequence