Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_03268

Experiment: MGL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_03267 and MPMX19_03268 are separated by 18 nucleotidesMPMX19_03268 and MPMX19_03269 are separated by 182 nucleotides MPMX19_03267: MPMX19_03267 - Periplasmic AppA protein, at 610,299 to 611,651 _03267 MPMX19_03268: MPMX19_03268 - HTH-type transcriptional regulator DegA, at 611,670 to 612,731 _03268 MPMX19_03269: MPMX19_03269 - hypothetical protein, at 612,914 to 614,197 _03269 Position (kb) 611 612 613Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 610.845 kb on + strand, within MPMX19_03267at 610.845 kb on + strand, within MPMX19_03267at 610.846 kb on - strand, within MPMX19_03267at 610.846 kb on - strand, within MPMX19_03267at 611.058 kb on + strand, within MPMX19_03267at 611.058 kb on + strand, within MPMX19_03267at 611.058 kb on + strand, within MPMX19_03267at 611.058 kb on + strand, within MPMX19_03267at 611.058 kb on + strand, within MPMX19_03267at 611.058 kb on + strand, within MPMX19_03267at 611.058 kb on + strand, within MPMX19_03267at 611.058 kb on + strand, within MPMX19_03267at 611.058 kb on + strand, within MPMX19_03267at 611.058 kb on + strand, within MPMX19_03267at 611.058 kb on + strand, within MPMX19_03267at 611.059 kb on - strand, within MPMX19_03267at 611.059 kb on - strand, within MPMX19_03267at 611.059 kb on - strand, within MPMX19_03267at 611.059 kb on - strand, within MPMX19_03267at 611.060 kb on + strand, within MPMX19_03267at 611.060 kb on + strand, within MPMX19_03267at 611.060 kb on + strand, within MPMX19_03267at 611.060 kb on + strand, within MPMX19_03267at 611.060 kb on + strand, within MPMX19_03267at 611.060 kb on + strand, within MPMX19_03267at 611.060 kb on + strand, within MPMX19_03267at 611.060 kb on + strand, within MPMX19_03267at 611.060 kb on + strand, within MPMX19_03267at 611.060 kb on + strand, within MPMX19_03267at 611.060 kb on + strand, within MPMX19_03267at 611.060 kb on + strand, within MPMX19_03267at 611.060 kb on + strand, within MPMX19_03267at 611.061 kb on - strand, within MPMX19_03267at 611.061 kb on - strand, within MPMX19_03267at 611.061 kb on - strand, within MPMX19_03267at 611.061 kb on - strand, within MPMX19_03267at 611.061 kb on - strand, within MPMX19_03267at 611.061 kb on - strand, within MPMX19_03267at 611.061 kb on - strand, within MPMX19_03267at 611.061 kb on - strand, within MPMX19_03267at 611.061 kb on - strand, within MPMX19_03267at 611.061 kb on - strand, within MPMX19_03267at 611.061 kb on - strand, within MPMX19_03267at 611.061 kb on - strand, within MPMX19_03267at 611.148 kb on + strand, within MPMX19_03267at 611.149 kb on - strand, within MPMX19_03267at 611.149 kb on - strand, within MPMX19_03267at 611.172 kb on + strand, within MPMX19_03267at 611.172 kb on + strand, within MPMX19_03267at 611.172 kb on + strand, within MPMX19_03267at 611.172 kb on + strand, within MPMX19_03267at 611.172 kb on + strand, within MPMX19_03267at 611.172 kb on + strand, within MPMX19_03267at 611.172 kb on + strand, within MPMX19_03267at 611.173 kb on - strand, within MPMX19_03267at 611.173 kb on - strand, within MPMX19_03267at 611.173 kb on - strand, within MPMX19_03267at 611.173 kb on - strand, within MPMX19_03267at 611.324 kb on + strand, within MPMX19_03267at 611.324 kb on + strand, within MPMX19_03267at 611.324 kb on + strand, within MPMX19_03267at 611.324 kb on + strand, within MPMX19_03267at 611.325 kb on - strand, within MPMX19_03267at 611.325 kb on - strand, within MPMX19_03267at 611.439 kb on + strand, within MPMX19_03267at 611.439 kb on + strand, within MPMX19_03267at 611.439 kb on + strand, within MPMX19_03267at 611.440 kb on - strand, within MPMX19_03267at 611.440 kb on - strand, within MPMX19_03267at 611.440 kb on - strand, within MPMX19_03267at 611.440 kb on - strand, within MPMX19_03267at 611.640 kb on + strandat 611.640 kb on + strandat 611.640 kb on + strandat 611.640 kb on + strandat 611.640 kb on + strandat 611.640 kb on + strandat 611.640 kb on + strandat 611.640 kb on + strandat 611.640 kb on + strandat 611.640 kb on + strandat 611.640 kb on + strandat 611.641 kb on - strandat 611.641 kb on - strandat 611.641 kb on - strandat 611.641 kb on - strandat 611.641 kb on - strandat 611.641 kb on - strandat 611.671 kb on + strandat 611.803 kb on + strand, within MPMX19_03268at 611.929 kb on + strand, within MPMX19_03268at 611.930 kb on - strand, within MPMX19_03268at 611.930 kb on - strand, within MPMX19_03268at 611.930 kb on - strand, within MPMX19_03268at 611.930 kb on - strand, within MPMX19_03268at 612.005 kb on - strand, within MPMX19_03268at 612.232 kb on + strand, within MPMX19_03268at 612.358 kb on + strand, within MPMX19_03268at 612.358 kb on + strand, within MPMX19_03268at 612.358 kb on + strand, within MPMX19_03268at 612.358 kb on + strand, within MPMX19_03268at 612.359 kb on - strand, within MPMX19_03268at 612.359 kb on - strand, within MPMX19_03268at 612.409 kb on + strand, within MPMX19_03268at 612.410 kb on - strand, within MPMX19_03268at 612.410 kb on - strand, within MPMX19_03268at 612.410 kb on - strand, within MPMX19_03268at 613.010 kb on + strandat 613.011 kb on - strandat 613.199 kb on + strand, within MPMX19_03269at 613.199 kb on + strand, within MPMX19_03269at 613.200 kb on - strand, within MPMX19_03269at 613.239 kb on - strand, within MPMX19_03269at 613.310 kb on + strand, within MPMX19_03269at 613.310 kb on + strand, within MPMX19_03269at 613.310 kb on + strand, within MPMX19_03269at 613.310 kb on + strand, within MPMX19_03269at 613.311 kb on - strand, within MPMX19_03269at 613.311 kb on - strand, within MPMX19_03269at 613.349 kb on + strand, within MPMX19_03269at 613.694 kb on + strand, within MPMX19_03269at 613.694 kb on + strand, within MPMX19_03269at 613.694 kb on + strand, within MPMX19_03269at 613.694 kb on + strand, within MPMX19_03269at 613.695 kb on - strand, within MPMX19_03269

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Per-strain Table

Position Strand Gene LocusTag Fraction MGL
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610,845 + MPMX19_03267 0.40 -0.9
610,845 + MPMX19_03267 0.40 -2.2
610,846 - MPMX19_03267 0.40 +0.1
610,846 - MPMX19_03267 0.40 -0.1
611,058 + MPMX19_03267 0.56 -0.9
611,058 + MPMX19_03267 0.56 -1.5
611,058 + MPMX19_03267 0.56 -0.9
611,058 + MPMX19_03267 0.56 -0.9
611,058 + MPMX19_03267 0.56 -2.5
611,058 + MPMX19_03267 0.56 -0.7
611,058 + MPMX19_03267 0.56 +0.6
611,058 + MPMX19_03267 0.56 +0.5
611,058 + MPMX19_03267 0.56 -1.3
611,058 + MPMX19_03267 0.56 -0.5
611,058 + MPMX19_03267 0.56 +0.9
611,059 - MPMX19_03267 0.56 -1.6
611,059 - MPMX19_03267 0.56 -1.0
611,059 - MPMX19_03267 0.56 +0.1
611,059 - MPMX19_03267 0.56 +0.3
611,060 + MPMX19_03267 0.56 +0.4
611,060 + MPMX19_03267 0.56 -0.5
611,060 + MPMX19_03267 0.56 -0.4
611,060 + MPMX19_03267 0.56 +0.3
611,060 + MPMX19_03267 0.56 -0.9
611,060 + MPMX19_03267 0.56 -1.6
611,060 + MPMX19_03267 0.56 -0.1
611,060 + MPMX19_03267 0.56 -0.0
611,060 + MPMX19_03267 0.56 -1.1
611,060 + MPMX19_03267 0.56 -1.9
611,060 + MPMX19_03267 0.56 -1.1
611,060 + MPMX19_03267 0.56 -1.0
611,060 + MPMX19_03267 0.56 -0.7
611,061 - MPMX19_03267 0.56 -1.2
611,061 - MPMX19_03267 0.56 -1.1
611,061 - MPMX19_03267 0.56 -0.9
611,061 - MPMX19_03267 0.56 +0.5
611,061 - MPMX19_03267 0.56 -0.2
611,061 - MPMX19_03267 0.56 -0.0
611,061 - MPMX19_03267 0.56 -1.9
611,061 - MPMX19_03267 0.56 -0.1
611,061 - MPMX19_03267 0.56 -0.5
611,061 - MPMX19_03267 0.56 +0.1
611,061 - MPMX19_03267 0.56 +0.5
611,061 - MPMX19_03267 0.56 -0.5
611,148 + MPMX19_03267 0.63 -2.6
611,149 - MPMX19_03267 0.63 +1.0
611,149 - MPMX19_03267 0.63 +0.1
611,172 + MPMX19_03267 0.65 -0.7
611,172 + MPMX19_03267 0.65 +0.0
611,172 + MPMX19_03267 0.65 -1.7
611,172 + MPMX19_03267 0.65 +0.3
611,172 + MPMX19_03267 0.65 -0.1
611,172 + MPMX19_03267 0.65 -2.2
611,172 + MPMX19_03267 0.65 +0.1
611,173 - MPMX19_03267 0.65 -0.9
611,173 - MPMX19_03267 0.65 -1.7
611,173 - MPMX19_03267 0.65 -0.9
611,173 - MPMX19_03267 0.65 -0.5
611,324 + MPMX19_03267 0.76 -0.5
611,324 + MPMX19_03267 0.76 -0.8
611,324 + MPMX19_03267 0.76 -0.4
611,324 + MPMX19_03267 0.76 -2.0
611,325 - MPMX19_03267 0.76 +0.1
611,325 - MPMX19_03267 0.76 -0.7
611,439 + MPMX19_03267 0.84 -2.3
611,439 + MPMX19_03267 0.84 +0.1
611,439 + MPMX19_03267 0.84 -1.3
611,440 - MPMX19_03267 0.84 -1.0
611,440 - MPMX19_03267 0.84 -0.6
611,440 - MPMX19_03267 0.84 -0.5
611,440 - MPMX19_03267 0.84 +0.7
611,640 + -0.8
611,640 + -0.4
611,640 + -1.1
611,640 + +0.5
611,640 + -2.6
611,640 + -0.7
611,640 + -1.4
611,640 + -0.9
611,640 + +1.5
611,640 + -1.2
611,640 + -1.2
611,641 - -1.5
611,641 - -2.4
611,641 - -1.0
611,641 - +0.6
611,641 - -1.1
611,641 - -1.4
611,671 + -0.4
611,803 + MPMX19_03268 0.13 -0.7
611,929 + MPMX19_03268 0.24 -1.5
611,930 - MPMX19_03268 0.24 -1.6
611,930 - MPMX19_03268 0.24 -1.9
611,930 - MPMX19_03268 0.24 -0.4
611,930 - MPMX19_03268 0.24 +0.5
612,005 - MPMX19_03268 0.32 +0.1
612,232 + MPMX19_03268 0.53 -0.6
612,358 + MPMX19_03268 0.65 -1.1
612,358 + MPMX19_03268 0.65 -0.9
612,358 + MPMX19_03268 0.65 -1.7
612,358 + MPMX19_03268 0.65 -0.4
612,359 - MPMX19_03268 0.65 -1.9
612,359 - MPMX19_03268 0.65 -0.5
612,409 + MPMX19_03268 0.70 -0.4
612,410 - MPMX19_03268 0.70 +1.5
612,410 - MPMX19_03268 0.70 +0.1
612,410 - MPMX19_03268 0.70 -0.7
613,010 + -2.4
613,011 - +0.5
613,199 + MPMX19_03269 0.22 +0.9
613,199 + MPMX19_03269 0.22 -1.4
613,200 - MPMX19_03269 0.22 -0.9
613,239 - MPMX19_03269 0.25 +0.0
613,310 + MPMX19_03269 0.31 -1.9
613,310 + MPMX19_03269 0.31 +0.7
613,310 + MPMX19_03269 0.31 -2.5
613,310 + MPMX19_03269 0.31 -3.1
613,311 - MPMX19_03269 0.31 -1.4
613,311 - MPMX19_03269 0.31 -0.5
613,349 + MPMX19_03269 0.34 +0.1
613,694 + MPMX19_03269 0.61 -0.7
613,694 + MPMX19_03269 0.61 +2.5
613,694 + MPMX19_03269 0.61 +0.1
613,694 + MPMX19_03269 0.61 -1.7
613,695 - MPMX19_03269 0.61 -1.2

Or see this region's nucleotide sequence