Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_02942

Experiment: MGL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_02941 and MPMX19_02942 are separated by 16 nucleotidesMPMX19_02942 and MPMX19_02943 are separated by 41 nucleotidesMPMX19_02943 and MPMX19_02944 are separated by 13 nucleotides MPMX19_02941: MPMX19_02941 - Fructose-bisphosphate aldolase, at 198,479 to 199,570 _02941 MPMX19_02942: MPMX19_02942 - Transketolase 1, at 199,587 to 201,665 _02942 MPMX19_02943: MPMX19_02943 - Phosphoribulokinase, chromosomal, at 201,707 to 202,582 _02943 MPMX19_02944: MPMX19_02944 - Fructose-1,6-bisphosphatase class 1, at 202,596 to 203,708 _02944 Position (kb) 199 200 201 202Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 198.804 kb on + strand, within MPMX19_02941at 198.805 kb on - strand, within MPMX19_02941at 198.805 kb on - strand, within MPMX19_02941at 198.805 kb on - strand, within MPMX19_02941at 198.805 kb on - strand, within MPMX19_02941at 198.969 kb on + strand, within MPMX19_02941at 198.969 kb on + strand, within MPMX19_02941at 198.970 kb on - strand, within MPMX19_02941at 198.970 kb on - strand, within MPMX19_02941at 198.970 kb on - strand, within MPMX19_02941at 198.970 kb on - strand, within MPMX19_02941at 199.212 kb on + strand, within MPMX19_02941at 199.212 kb on + strand, within MPMX19_02941at 199.212 kb on + strand, within MPMX19_02941at 199.212 kb on + strand, within MPMX19_02941at 199.212 kb on + strand, within MPMX19_02941at 199.212 kb on + strand, within MPMX19_02941at 199.212 kb on + strand, within MPMX19_02941at 199.213 kb on - strand, within MPMX19_02941at 199.213 kb on - strand, within MPMX19_02941at 199.213 kb on - strand, within MPMX19_02941at 199.213 kb on - strand, within MPMX19_02941at 199.213 kb on - strand, within MPMX19_02941at 199.219 kb on - strand, within MPMX19_02941at 199.219 kb on - strand, within MPMX19_02941at 199.378 kb on + strand, within MPMX19_02941at 199.378 kb on + strand, within MPMX19_02941at 199.378 kb on + strand, within MPMX19_02941at 199.379 kb on - strand, within MPMX19_02941at 199.379 kb on - strand, within MPMX19_02941at 199.379 kb on - strand, within MPMX19_02941at 199.379 kb on - strand, within MPMX19_02941at 199.379 kb on - strand, within MPMX19_02941at 199.404 kb on + strand, within MPMX19_02941at 199.404 kb on + strand, within MPMX19_02941at 199.404 kb on + strand, within MPMX19_02941at 199.404 kb on + strand, within MPMX19_02941at 199.405 kb on - strand, within MPMX19_02941at 199.518 kb on + strandat 199.518 kb on + strandat 199.657 kb on + strandat 199.658 kb on - strandat 199.788 kb on + strandat 199.788 kb on + strandat 199.789 kb on - strandat 199.905 kb on + strand, within MPMX19_02942at 199.905 kb on + strand, within MPMX19_02942at 199.905 kb on + strand, within MPMX19_02942at 199.905 kb on + strand, within MPMX19_02942at 199.905 kb on + strand, within MPMX19_02942at 199.906 kb on - strand, within MPMX19_02942at 199.906 kb on - strand, within MPMX19_02942at 199.906 kb on - strand, within MPMX19_02942at 199.906 kb on - strand, within MPMX19_02942at 199.963 kb on + strand, within MPMX19_02942at 199.964 kb on - strand, within MPMX19_02942at 199.964 kb on - strand, within MPMX19_02942at 200.276 kb on - strand, within MPMX19_02942at 200.276 kb on - strand, within MPMX19_02942at 200.374 kb on + strand, within MPMX19_02942at 200.374 kb on + strand, within MPMX19_02942at 200.375 kb on - strand, within MPMX19_02942at 200.632 kb on + strand, within MPMX19_02942at 200.633 kb on - strand, within MPMX19_02942at 200.701 kb on + strand, within MPMX19_02942at 200.909 kb on - strand, within MPMX19_02942at 200.950 kb on + strand, within MPMX19_02942at 200.951 kb on - strand, within MPMX19_02942at 200.951 kb on - strand, within MPMX19_02942at 200.951 kb on - strand, within MPMX19_02942at 201.028 kb on + strand, within MPMX19_02942at 201.028 kb on + strand, within MPMX19_02942at 201.028 kb on + strand, within MPMX19_02942at 201.029 kb on - strand, within MPMX19_02942at 201.029 kb on - strand, within MPMX19_02942at 201.029 kb on - strand, within MPMX19_02942at 201.265 kb on + strand, within MPMX19_02942at 201.266 kb on - strand, within MPMX19_02942at 201.334 kb on + strand, within MPMX19_02942at 201.334 kb on + strand, within MPMX19_02942at 201.358 kb on + strand, within MPMX19_02942at 201.358 kb on + strand, within MPMX19_02942at 201.358 kb on + strand, within MPMX19_02942at 201.359 kb on - strand, within MPMX19_02942at 201.359 kb on - strand, within MPMX19_02942at 201.585 kb on - strandat 201.585 kb on - strandat 201.585 kb on - strandat 201.585 kb on - strandat 201.672 kb on + strandat 201.673 kb on - strandat 201.673 kb on - strandat 201.673 kb on - strandat 201.708 kb on + strandat 201.708 kb on + strandat 201.709 kb on - strandat 201.849 kb on + strand, within MPMX19_02943at 201.850 kb on - strand, within MPMX19_02943at 202.002 kb on + strand, within MPMX19_02943at 202.002 kb on + strand, within MPMX19_02943at 202.002 kb on + strand, within MPMX19_02943at 202.002 kb on + strand, within MPMX19_02943at 202.002 kb on + strand, within MPMX19_02943at 202.002 kb on + strand, within MPMX19_02943at 202.002 kb on + strand, within MPMX19_02943at 202.002 kb on + strand, within MPMX19_02943at 202.002 kb on + strand, within MPMX19_02943at 202.003 kb on - strand, within MPMX19_02943at 202.003 kb on - strand, within MPMX19_02943at 202.003 kb on - strand, within MPMX19_02943at 202.011 kb on + strand, within MPMX19_02943at 202.011 kb on + strand, within MPMX19_02943at 202.011 kb on + strand, within MPMX19_02943at 202.011 kb on + strand, within MPMX19_02943at 202.194 kb on + strand, within MPMX19_02943at 202.194 kb on + strand, within MPMX19_02943at 202.195 kb on - strand, within MPMX19_02943at 202.195 kb on - strand, within MPMX19_02943at 202.195 kb on - strand, within MPMX19_02943at 202.323 kb on + strand, within MPMX19_02943at 202.323 kb on + strand, within MPMX19_02943at 202.324 kb on - strand, within MPMX19_02943at 202.324 kb on - strand, within MPMX19_02943

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Per-strain Table

Position Strand Gene LocusTag Fraction MGL
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198,804 + MPMX19_02941 0.30 +0.1
198,805 - MPMX19_02941 0.30 -0.9
198,805 - MPMX19_02941 0.30 -0.4
198,805 - MPMX19_02941 0.30 -0.2
198,805 - MPMX19_02941 0.30 -2.9
198,969 + MPMX19_02941 0.45 -1.3
198,969 + MPMX19_02941 0.45 -1.0
198,970 - MPMX19_02941 0.45 -1.3
198,970 - MPMX19_02941 0.45 +0.1
198,970 - MPMX19_02941 0.45 -0.6
198,970 - MPMX19_02941 0.45 -1.2
199,212 + MPMX19_02941 0.67 -0.0
199,212 + MPMX19_02941 0.67 -0.7
199,212 + MPMX19_02941 0.67 -0.1
199,212 + MPMX19_02941 0.67 -0.2
199,212 + MPMX19_02941 0.67 -0.9
199,212 + MPMX19_02941 0.67 -0.7
199,212 + MPMX19_02941 0.67 +0.3
199,213 - MPMX19_02941 0.67 +0.4
199,213 - MPMX19_02941 0.67 +0.1
199,213 - MPMX19_02941 0.67 -0.6
199,213 - MPMX19_02941 0.67 +1.2
199,213 - MPMX19_02941 0.67 +0.4
199,219 - MPMX19_02941 0.68 -2.6
199,219 - MPMX19_02941 0.68 -0.6
199,378 + MPMX19_02941 0.82 +0.4
199,378 + MPMX19_02941 0.82 -0.4
199,378 + MPMX19_02941 0.82 -1.7
199,379 - MPMX19_02941 0.82 +0.6
199,379 - MPMX19_02941 0.82 -0.9
199,379 - MPMX19_02941 0.82 -0.3
199,379 - MPMX19_02941 0.82 +0.1
199,379 - MPMX19_02941 0.82 -1.7
199,404 + MPMX19_02941 0.85 -0.6
199,404 + MPMX19_02941 0.85 -0.9
199,404 + MPMX19_02941 0.85 -2.5
199,404 + MPMX19_02941 0.85 -0.7
199,405 - MPMX19_02941 0.85 -0.2
199,518 + +0.1
199,518 + -1.3
199,657 + -0.8
199,658 - -0.0
199,788 + +0.2
199,788 + -0.6
199,789 - +0.8
199,905 + MPMX19_02942 0.15 +1.0
199,905 + MPMX19_02942 0.15 -1.5
199,905 + MPMX19_02942 0.15 +1.4
199,905 + MPMX19_02942 0.15 -1.7
199,905 + MPMX19_02942 0.15 +0.4
199,906 - MPMX19_02942 0.15 -2.0
199,906 - MPMX19_02942 0.15 -1.4
199,906 - MPMX19_02942 0.15 -0.4
199,906 - MPMX19_02942 0.15 -0.3
199,963 + MPMX19_02942 0.18 -0.2
199,964 - MPMX19_02942 0.18 -0.4
199,964 - MPMX19_02942 0.18 -1.4
200,276 - MPMX19_02942 0.33 -0.5
200,276 - MPMX19_02942 0.33 +0.2
200,374 + MPMX19_02942 0.38 -0.9
200,374 + MPMX19_02942 0.38 -1.4
200,375 - MPMX19_02942 0.38 -1.2
200,632 + MPMX19_02942 0.50 -0.0
200,633 - MPMX19_02942 0.50 -0.5
200,701 + MPMX19_02942 0.54 -1.1
200,909 - MPMX19_02942 0.64 +0.4
200,950 + MPMX19_02942 0.66 +0.9
200,951 - MPMX19_02942 0.66 -1.2
200,951 - MPMX19_02942 0.66 -0.3
200,951 - MPMX19_02942 0.66 -0.6
201,028 + MPMX19_02942 0.69 +0.6
201,028 + MPMX19_02942 0.69 -0.4
201,028 + MPMX19_02942 0.69 +0.2
201,029 - MPMX19_02942 0.69 +1.4
201,029 - MPMX19_02942 0.69 +0.3
201,029 - MPMX19_02942 0.69 +0.4
201,265 + MPMX19_02942 0.81 -0.9
201,266 - MPMX19_02942 0.81 -0.6
201,334 + MPMX19_02942 0.84 +0.4
201,334 + MPMX19_02942 0.84 +1.2
201,358 + MPMX19_02942 0.85 -1.0
201,358 + MPMX19_02942 0.85 -0.2
201,358 + MPMX19_02942 0.85 +0.4
201,359 - MPMX19_02942 0.85 -0.0
201,359 - MPMX19_02942 0.85 -0.3
201,585 - +0.4
201,585 - +0.8
201,585 - -0.4
201,585 - +1.6
201,672 + -0.1
201,673 - -1.2
201,673 - -0.3
201,673 - -2.3
201,708 + -0.6
201,708 + -1.3
201,709 - -2.4
201,849 + MPMX19_02943 0.16 -0.0
201,850 - MPMX19_02943 0.16 +0.1
202,002 + MPMX19_02943 0.34 +0.3
202,002 + MPMX19_02943 0.34 -2.8
202,002 + MPMX19_02943 0.34 +0.4
202,002 + MPMX19_02943 0.34 +1.3
202,002 + MPMX19_02943 0.34 -1.3
202,002 + MPMX19_02943 0.34 -0.9
202,002 + MPMX19_02943 0.34 -2.2
202,002 + MPMX19_02943 0.34 -0.7
202,002 + MPMX19_02943 0.34 +0.6
202,003 - MPMX19_02943 0.34 -0.5
202,003 - MPMX19_02943 0.34 -0.4
202,003 - MPMX19_02943 0.34 -1.9
202,011 + MPMX19_02943 0.35 -0.4
202,011 + MPMX19_02943 0.35 -0.5
202,011 + MPMX19_02943 0.35 +0.2
202,011 + MPMX19_02943 0.35 +1.8
202,194 + MPMX19_02943 0.56 -1.3
202,194 + MPMX19_02943 0.56 +0.5
202,195 - MPMX19_02943 0.56 +0.1
202,195 - MPMX19_02943 0.56 +0.8
202,195 - MPMX19_02943 0.56 +0.8
202,323 + MPMX19_02943 0.70 +0.8
202,323 + MPMX19_02943 0.70 +0.8
202,324 - MPMX19_02943 0.70 -0.3
202,324 - MPMX19_02943 0.70 -0.0

Or see this region's nucleotide sequence