Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_02793

Experiment: MGL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_02792 and MPMX19_02793 are separated by 380 nucleotidesMPMX19_02793 and MPMX19_02794 are separated by 36 nucleotides MPMX19_02792: MPMX19_02792 - HTH-type transcriptional regulator KipR, at 26,049 to 26,942 _02792 MPMX19_02793: MPMX19_02793 - putative quorum-quenching lactonase YtnP, at 27,323 to 28,213 _02793 MPMX19_02794: MPMX19_02794 - hypothetical protein, at 28,250 to 29,839 _02794 Position (kb) 27 28 29Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 26.373 kb on - strand, within MPMX19_02792at 26.373 kb on - strand, within MPMX19_02792at 26.416 kb on + strand, within MPMX19_02792at 26.416 kb on + strand, within MPMX19_02792at 26.417 kb on - strand, within MPMX19_02792at 26.417 kb on - strand, within MPMX19_02792at 26.417 kb on - strand, within MPMX19_02792at 26.542 kb on + strand, within MPMX19_02792at 26.542 kb on + strand, within MPMX19_02792at 26.543 kb on - strand, within MPMX19_02792at 26.543 kb on - strand, within MPMX19_02792at 26.543 kb on - strand, within MPMX19_02792at 26.671 kb on + strand, within MPMX19_02792at 26.672 kb on - strand, within MPMX19_02792at 26.672 kb on - strand, within MPMX19_02792at 26.672 kb on - strand, within MPMX19_02792at 26.672 kb on - strand, within MPMX19_02792at 26.672 kb on - strand, within MPMX19_02792at 26.804 kb on - strand, within MPMX19_02792at 26.804 kb on - strand, within MPMX19_02792at 26.942 kb on + strandat 26.942 kb on + strandat 26.943 kb on - strandat 26.958 kb on - strandat 27.322 kb on + strandat 27.322 kb on + strandat 27.322 kb on + strandat 27.322 kb on + strandat 27.322 kb on + strandat 27.322 kb on + strandat 27.322 kb on + strandat 27.322 kb on + strandat 27.323 kb on - strandat 27.323 kb on - strandat 27.323 kb on - strandat 27.323 kb on - strandat 27.323 kb on - strandat 27.323 kb on - strandat 27.323 kb on - strandat 27.323 kb on - strandat 27.323 kb on - strandat 27.323 kb on - strandat 27.323 kb on - strandat 27.323 kb on - strandat 27.323 kb on - strandat 27.323 kb on - strandat 27.413 kb on + strand, within MPMX19_02793at 27.413 kb on + strand, within MPMX19_02793at 27.414 kb on - strand, within MPMX19_02793at 27.414 kb on - strand, within MPMX19_02793at 27.614 kb on + strand, within MPMX19_02793at 27.614 kb on + strand, within MPMX19_02793at 27.614 kb on + strand, within MPMX19_02793at 27.615 kb on - strand, within MPMX19_02793at 27.615 kb on - strand, within MPMX19_02793at 27.615 kb on - strand, within MPMX19_02793at 27.681 kb on + strand, within MPMX19_02793at 27.681 kb on + strand, within MPMX19_02793at 27.681 kb on + strand, within MPMX19_02793at 27.681 kb on + strand, within MPMX19_02793at 27.681 kb on + strand, within MPMX19_02793at 27.681 kb on + strand, within MPMX19_02793at 27.681 kb on + strand, within MPMX19_02793at 27.681 kb on + strand, within MPMX19_02793at 27.681 kb on + strand, within MPMX19_02793at 27.681 kb on + strand, within MPMX19_02793at 27.681 kb on + strand, within MPMX19_02793at 27.681 kb on + strand, within MPMX19_02793at 27.681 kb on + strand, within MPMX19_02793at 27.682 kb on - strand, within MPMX19_02793at 27.682 kb on - strand, within MPMX19_02793at 27.682 kb on - strand, within MPMX19_02793at 27.682 kb on - strand, within MPMX19_02793at 27.682 kb on - strand, within MPMX19_02793at 27.682 kb on - strand, within MPMX19_02793at 27.682 kb on - strand, within MPMX19_02793at 27.682 kb on - strand, within MPMX19_02793at 27.682 kb on - strand, within MPMX19_02793at 27.682 kb on - strand, within MPMX19_02793at 27.755 kb on + strand, within MPMX19_02793at 27.755 kb on + strand, within MPMX19_02793at 27.755 kb on + strand, within MPMX19_02793at 27.756 kb on - strand, within MPMX19_02793at 27.756 kb on - strand, within MPMX19_02793at 27.756 kb on - strand, within MPMX19_02793at 27.761 kb on + strand, within MPMX19_02793at 27.761 kb on + strand, within MPMX19_02793at 27.761 kb on + strand, within MPMX19_02793at 27.762 kb on - strand, within MPMX19_02793at 27.762 kb on - strand, within MPMX19_02793at 27.762 kb on - strand, within MPMX19_02793at 27.762 kb on - strand, within MPMX19_02793at 27.762 kb on - strand, within MPMX19_02793at 27.762 kb on - strand, within MPMX19_02793at 27.989 kb on + strand, within MPMX19_02793at 27.989 kb on + strand, within MPMX19_02793at 27.990 kb on - strand, within MPMX19_02793at 27.990 kb on - strand, within MPMX19_02793at 28.230 kb on + strandat 28.230 kb on + strandat 28.493 kb on + strand, within MPMX19_02794at 28.493 kb on + strand, within MPMX19_02794at 28.493 kb on + strand, within MPMX19_02794at 28.494 kb on - strand, within MPMX19_02794at 28.494 kb on - strand, within MPMX19_02794at 28.494 kb on - strand, within MPMX19_02794at 28.494 kb on - strand, within MPMX19_02794at 28.494 kb on - strand, within MPMX19_02794at 28.494 kb on - strand, within MPMX19_02794at 28.494 kb on - strand, within MPMX19_02794at 28.505 kb on + strand, within MPMX19_02794at 28.505 kb on + strand, within MPMX19_02794at 28.505 kb on + strand, within MPMX19_02794at 28.505 kb on + strand, within MPMX19_02794at 28.505 kb on + strand, within MPMX19_02794at 28.506 kb on - strand, within MPMX19_02794at 28.506 kb on - strand, within MPMX19_02794at 28.506 kb on - strand, within MPMX19_02794at 28.506 kb on - strand, within MPMX19_02794at 28.506 kb on - strand, within MPMX19_02794at 28.506 kb on - strand, within MPMX19_02794at 28.586 kb on + strand, within MPMX19_02794at 28.586 kb on + strand, within MPMX19_02794at 28.586 kb on + strand, within MPMX19_02794at 28.586 kb on + strand, within MPMX19_02794at 28.587 kb on - strand, within MPMX19_02794at 28.587 kb on - strand, within MPMX19_02794at 28.587 kb on - strand, within MPMX19_02794at 28.587 kb on - strand, within MPMX19_02794at 28.587 kb on - strand, within MPMX19_02794at 28.587 kb on - strand, within MPMX19_02794at 28.587 kb on - strand, within MPMX19_02794at 28.587 kb on - strand, within MPMX19_02794at 28.587 kb on - strand, within MPMX19_02794

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Per-strain Table

Position Strand Gene LocusTag Fraction MGL
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26,373 - MPMX19_02792 0.36 +0.4
26,373 - MPMX19_02792 0.36 -2.1
26,416 + MPMX19_02792 0.41 +0.3
26,416 + MPMX19_02792 0.41 -1.4
26,417 - MPMX19_02792 0.41 -0.7
26,417 - MPMX19_02792 0.41 -2.9
26,417 - MPMX19_02792 0.41 +0.4
26,542 + MPMX19_02792 0.55 +0.1
26,542 + MPMX19_02792 0.55 +0.6
26,543 - MPMX19_02792 0.55 +0.7
26,543 - MPMX19_02792 0.55 +1.4
26,543 - MPMX19_02792 0.55 -1.0
26,671 + MPMX19_02792 0.70 -0.7
26,672 - MPMX19_02792 0.70 -1.3
26,672 - MPMX19_02792 0.70 +2.4
26,672 - MPMX19_02792 0.70 +0.2
26,672 - MPMX19_02792 0.70 +1.2
26,672 - MPMX19_02792 0.70 -0.9
26,804 - MPMX19_02792 0.84 -2.0
26,804 - MPMX19_02792 0.84 -0.4
26,942 + +0.1
26,942 + -1.7
26,943 - +0.8
26,958 - -0.1
27,322 + +0.0
27,322 + -1.0
27,322 + -2.5
27,322 + +0.3
27,322 + -0.0
27,322 + +0.7
27,322 + +0.6
27,322 + -1.0
27,323 - -1.4
27,323 - -2.5
27,323 - +0.8
27,323 - -0.9
27,323 - -1.0
27,323 - -0.7
27,323 - +0.1
27,323 - -0.5
27,323 - -1.5
27,323 - -3.3
27,323 - -1.0
27,323 - -0.5
27,323 - +1.4
27,323 - -0.9
27,413 + MPMX19_02793 0.10 +0.8
27,413 + MPMX19_02793 0.10 -1.2
27,414 - MPMX19_02793 0.10 -0.1
27,414 - MPMX19_02793 0.10 -1.0
27,614 + MPMX19_02793 0.33 -0.2
27,614 + MPMX19_02793 0.33 -2.2
27,614 + MPMX19_02793 0.33 -0.3
27,615 - MPMX19_02793 0.33 -0.9
27,615 - MPMX19_02793 0.33 +0.1
27,615 - MPMX19_02793 0.33 -1.9
27,681 + MPMX19_02793 0.40 -1.5
27,681 + MPMX19_02793 0.40 -0.2
27,681 + MPMX19_02793 0.40 -1.0
27,681 + MPMX19_02793 0.40 -1.0
27,681 + MPMX19_02793 0.40 -0.6
27,681 + MPMX19_02793 0.40 -1.5
27,681 + MPMX19_02793 0.40 -1.4
27,681 + MPMX19_02793 0.40 -0.4
27,681 + MPMX19_02793 0.40 -0.9
27,681 + MPMX19_02793 0.40 -0.2
27,681 + MPMX19_02793 0.40 -1.7
27,681 + MPMX19_02793 0.40 -0.2
27,681 + MPMX19_02793 0.40 -0.6
27,682 - MPMX19_02793 0.40 +1.1
27,682 - MPMX19_02793 0.40 -1.3
27,682 - MPMX19_02793 0.40 -1.3
27,682 - MPMX19_02793 0.40 -0.7
27,682 - MPMX19_02793 0.40 +0.3
27,682 - MPMX19_02793 0.40 -1.1
27,682 - MPMX19_02793 0.40 -2.2
27,682 - MPMX19_02793 0.40 -0.0
27,682 - MPMX19_02793 0.40 -1.7
27,682 - MPMX19_02793 0.40 -0.2
27,755 + MPMX19_02793 0.48 +0.4
27,755 + MPMX19_02793 0.48 -0.1
27,755 + MPMX19_02793 0.48 -0.9
27,756 - MPMX19_02793 0.49 -0.2
27,756 - MPMX19_02793 0.49 -2.1
27,756 - MPMX19_02793 0.49 -0.9
27,761 + MPMX19_02793 0.49 -0.9
27,761 + MPMX19_02793 0.49 -1.5
27,761 + MPMX19_02793 0.49 -0.0
27,762 - MPMX19_02793 0.49 -0.7
27,762 - MPMX19_02793 0.49 -0.8
27,762 - MPMX19_02793 0.49 +0.1
27,762 - MPMX19_02793 0.49 -0.5
27,762 - MPMX19_02793 0.49 -1.0
27,762 - MPMX19_02793 0.49 -1.7
27,989 + MPMX19_02793 0.75 -2.6
27,989 + MPMX19_02793 0.75 -0.4
27,990 - MPMX19_02793 0.75 -0.5
27,990 - MPMX19_02793 0.75 -1.3
28,230 + -0.3
28,230 + +1.2
28,493 + MPMX19_02794 0.15 +1.4
28,493 + MPMX19_02794 0.15 -0.6
28,493 + MPMX19_02794 0.15 -1.4
28,494 - MPMX19_02794 0.15 +1.4
28,494 - MPMX19_02794 0.15 -0.2
28,494 - MPMX19_02794 0.15 +0.8
28,494 - MPMX19_02794 0.15 -0.1
28,494 - MPMX19_02794 0.15 -1.0
28,494 - MPMX19_02794 0.15 +0.0
28,494 - MPMX19_02794 0.15 -0.9
28,505 + MPMX19_02794 0.16 +0.1
28,505 + MPMX19_02794 0.16 -0.1
28,505 + MPMX19_02794 0.16 +0.1
28,505 + MPMX19_02794 0.16 +2.4
28,505 + MPMX19_02794 0.16 +1.8
28,506 - MPMX19_02794 0.16 +0.1
28,506 - MPMX19_02794 0.16 -0.2
28,506 - MPMX19_02794 0.16 +0.1
28,506 - MPMX19_02794 0.16 -0.3
28,506 - MPMX19_02794 0.16 +1.2
28,506 - MPMX19_02794 0.16 -1.2
28,586 + MPMX19_02794 0.21 +0.4
28,586 + MPMX19_02794 0.21 -1.2
28,586 + MPMX19_02794 0.21 -0.2
28,586 + MPMX19_02794 0.21 -0.4
28,587 - MPMX19_02794 0.21 -2.6
28,587 - MPMX19_02794 0.21 -0.1
28,587 - MPMX19_02794 0.21 -0.6
28,587 - MPMX19_02794 0.21 +0.9
28,587 - MPMX19_02794 0.21 +0.7
28,587 - MPMX19_02794 0.21 -0.6
28,587 - MPMX19_02794 0.21 -0.8
28,587 - MPMX19_02794 0.21 -0.4
28,587 - MPMX19_02794 0.21 +0.1

Or see this region's nucleotide sequence