Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_02770

Experiment: MGL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_02768 and MPMX19_02769 overlap by 4 nucleotidesMPMX19_02769 and MPMX19_02770 are separated by 19 nucleotidesMPMX19_02770 and MPMX19_02771 are separated by 118 nucleotidesMPMX19_02771 and MPMX19_02772 are separated by 230 nucleotides MPMX19_02768: MPMX19_02768 - Ribose operon repressor, at 40 to 1,014 _02768 MPMX19_02769: MPMX19_02769 - Ribokinase, at 1,011 to 1,937 _02769 MPMX19_02770: MPMX19_02770 - C4-dicarboxylic acid transporter DauA, at 1,957 to 3,696 _02770 MPMX19_02771: MPMX19_02771 - hypothetical protein, at 3,815 to 4,075 _02771 MPMX19_02772: MPMX19_02772 - N-acetylcysteine deacetylase, at 4,306 to 5,475 _02772 Position (kb) 1 2 3 4Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1.028 kb on + strandat 1.029 kb on - strandat 1.029 kb on - strandat 1.068 kb on + strandat 1.068 kb on + strandat 1.117 kb on - strand, within MPMX19_02769at 1.704 kb on + strand, within MPMX19_02769at 1.704 kb on + strand, within MPMX19_02769at 1.704 kb on + strand, within MPMX19_02769at 1.704 kb on + strand, within MPMX19_02769at 1.704 kb on + strand, within MPMX19_02769at 1.705 kb on - strand, within MPMX19_02769at 1.705 kb on - strand, within MPMX19_02769at 1.705 kb on - strand, within MPMX19_02769at 1.705 kb on - strand, within MPMX19_02769at 1.705 kb on - strand, within MPMX19_02769at 1.705 kb on - strand, within MPMX19_02769at 1.705 kb on - strand, within MPMX19_02769at 1.705 kb on - strand, within MPMX19_02769at 1.958 kb on + strandat 1.959 kb on - strandat 2.051 kb on + strandat 2.051 kb on + strandat 2.051 kb on + strandat 2.051 kb on + strandat 2.051 kb on + strandat 2.051 kb on + strandat 2.051 kb on + strandat 2.051 kb on + strandat 2.051 kb on + strandat 2.051 kb on + strandat 2.051 kb on + strandat 2.051 kb on + strandat 2.052 kb on - strandat 2.052 kb on - strandat 2.052 kb on - strandat 2.306 kb on + strand, within MPMX19_02770at 2.307 kb on - strand, within MPMX19_02770at 2.342 kb on + strand, within MPMX19_02770at 2.342 kb on + strand, within MPMX19_02770at 2.342 kb on + strand, within MPMX19_02770at 2.343 kb on - strand, within MPMX19_02770at 2.343 kb on - strand, within MPMX19_02770at 2.343 kb on - strand, within MPMX19_02770at 2.343 kb on - strand, within MPMX19_02770at 2.343 kb on - strand, within MPMX19_02770at 2.343 kb on - strand, within MPMX19_02770at 2.686 kb on + strand, within MPMX19_02770at 2.686 kb on + strand, within MPMX19_02770at 2.686 kb on + strand, within MPMX19_02770at 2.686 kb on + strand, within MPMX19_02770at 2.686 kb on + strand, within MPMX19_02770at 2.687 kb on - strand, within MPMX19_02770at 2.687 kb on - strand, within MPMX19_02770at 2.687 kb on - strand, within MPMX19_02770at 2.687 kb on - strand, within MPMX19_02770at 2.687 kb on - strand, within MPMX19_02770at 3.290 kb on + strand, within MPMX19_02770at 3.308 kb on + strand, within MPMX19_02770at 3.308 kb on + strand, within MPMX19_02770at 3.308 kb on + strand, within MPMX19_02770at 3.308 kb on + strand, within MPMX19_02770at 3.308 kb on + strand, within MPMX19_02770at 3.308 kb on + strand, within MPMX19_02770at 3.308 kb on + strand, within MPMX19_02770at 3.308 kb on + strand, within MPMX19_02770at 3.308 kb on + strand, within MPMX19_02770at 3.308 kb on + strand, within MPMX19_02770at 3.309 kb on - strand, within MPMX19_02770at 3.309 kb on - strand, within MPMX19_02770at 3.309 kb on - strand, within MPMX19_02770at 3.309 kb on - strand, within MPMX19_02770at 3.309 kb on - strand, within MPMX19_02770at 3.309 kb on - strand, within MPMX19_02770at 3.309 kb on - strand, within MPMX19_02770at 3.309 kb on - strand, within MPMX19_02770at 3.309 kb on - strand, within MPMX19_02770at 3.309 kb on - strand, within MPMX19_02770at 3.500 kb on + strand, within MPMX19_02770at 3.500 kb on + strand, within MPMX19_02770at 3.500 kb on + strand, within MPMX19_02770at 3.500 kb on + strand, within MPMX19_02770at 3.501 kb on - strand, within MPMX19_02770at 3.501 kb on - strand, within MPMX19_02770at 3.501 kb on - strand, within MPMX19_02770at 3.501 kb on - strand, within MPMX19_02770at 3.617 kb on + strandat 3.617 kb on + strandat 3.719 kb on - strandat 4.094 kb on - strandat 4.234 kb on + strandat 4.235 kb on - strandat 4.235 kb on - strandat 4.293 kb on + strandat 4.293 kb on + strandat 4.293 kb on + strandat 4.293 kb on + strandat 4.293 kb on + strandat 4.293 kb on + strandat 4.294 kb on - strandat 4.294 kb on - strandat 4.294 kb on - strandat 4.294 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MGL
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1,028 + +0.8
1,029 - +3.0
1,029 - +0.4
1,068 + -0.9
1,068 + -0.0
1,117 - MPMX19_02769 0.11 -1.6
1,704 + MPMX19_02769 0.75 -1.9
1,704 + MPMX19_02769 0.75 -0.4
1,704 + MPMX19_02769 0.75 -0.9
1,704 + MPMX19_02769 0.75 -0.4
1,704 + MPMX19_02769 0.75 -1.3
1,705 - MPMX19_02769 0.75 -0.9
1,705 - MPMX19_02769 0.75 -1.2
1,705 - MPMX19_02769 0.75 -0.1
1,705 - MPMX19_02769 0.75 +0.8
1,705 - MPMX19_02769 0.75 -0.4
1,705 - MPMX19_02769 0.75 -0.0
1,705 - MPMX19_02769 0.75 -0.3
1,705 - MPMX19_02769 0.75 -0.6
1,958 + +0.3
1,959 - -1.2
2,051 + +1.2
2,051 + +0.6
2,051 + -0.9
2,051 + -0.9
2,051 + +1.2
2,051 + -0.9
2,051 + -1.2
2,051 + +0.5
2,051 + +0.5
2,051 + +1.0
2,051 + -2.2
2,051 + -1.0
2,052 - -0.7
2,052 - -0.8
2,052 - -0.4
2,306 + MPMX19_02770 0.20 -0.9
2,307 - MPMX19_02770 0.20 -0.0
2,342 + MPMX19_02770 0.22 -1.5
2,342 + MPMX19_02770 0.22 -0.3
2,342 + MPMX19_02770 0.22 +1.0
2,343 - MPMX19_02770 0.22 -1.1
2,343 - MPMX19_02770 0.22 -2.0
2,343 - MPMX19_02770 0.22 -0.6
2,343 - MPMX19_02770 0.22 -0.4
2,343 - MPMX19_02770 0.22 +0.8
2,343 - MPMX19_02770 0.22 -1.0
2,686 + MPMX19_02770 0.42 -1.0
2,686 + MPMX19_02770 0.42 +1.1
2,686 + MPMX19_02770 0.42 -0.0
2,686 + MPMX19_02770 0.42 -0.8
2,686 + MPMX19_02770 0.42 -0.2
2,687 - MPMX19_02770 0.42 -0.3
2,687 - MPMX19_02770 0.42 -0.5
2,687 - MPMX19_02770 0.42 +0.4
2,687 - MPMX19_02770 0.42 -0.1
2,687 - MPMX19_02770 0.42 -0.2
3,290 + MPMX19_02770 0.77 +0.5
3,308 + MPMX19_02770 0.78 -0.9
3,308 + MPMX19_02770 0.78 -0.2
3,308 + MPMX19_02770 0.78 -1.4
3,308 + MPMX19_02770 0.78 +0.6
3,308 + MPMX19_02770 0.78 -1.3
3,308 + MPMX19_02770 0.78 -0.6
3,308 + MPMX19_02770 0.78 -0.0
3,308 + MPMX19_02770 0.78 +0.8
3,308 + MPMX19_02770 0.78 +0.6
3,308 + MPMX19_02770 0.78 -0.4
3,309 - MPMX19_02770 0.78 -1.2
3,309 - MPMX19_02770 0.78 -0.9
3,309 - MPMX19_02770 0.78 -0.7
3,309 - MPMX19_02770 0.78 +0.7
3,309 - MPMX19_02770 0.78 -0.0
3,309 - MPMX19_02770 0.78 -1.4
3,309 - MPMX19_02770 0.78 -1.2
3,309 - MPMX19_02770 0.78 +1.4
3,309 - MPMX19_02770 0.78 -1.3
3,309 - MPMX19_02770 0.78 -0.5
3,500 + MPMX19_02770 0.89 -0.5
3,500 + MPMX19_02770 0.89 -0.9
3,500 + MPMX19_02770 0.89 +0.1
3,500 + MPMX19_02770 0.89 -0.1
3,501 - MPMX19_02770 0.89 -1.7
3,501 - MPMX19_02770 0.89 -1.4
3,501 - MPMX19_02770 0.89 +0.4
3,501 - MPMX19_02770 0.89 +0.3
3,617 + -1.2
3,617 + -0.2
3,719 - -0.2
4,094 - -0.9
4,234 + -0.4
4,235 - -1.3
4,235 - -0.9
4,293 + -0.3
4,293 + +0.4
4,293 + -2.2
4,293 + -0.7
4,293 + -0.4
4,293 + -1.0
4,294 - -0.7
4,294 - -1.9
4,294 - +0.4
4,294 - -0.3

Or see this region's nucleotide sequence