Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_02557

Experiment: MGL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_02556 and MPMX19_02557 are separated by 92 nucleotidesMPMX19_02557 and MPMX19_02558 are separated by 436 nucleotides MPMX19_02556: MPMX19_02556 - Ferrochelatase, at 2,671,947 to 2,673,101 _02556 MPMX19_02557: MPMX19_02557 - Uroporphyrinogen decarboxylase, at 2,673,194 to 2,674,297 _02557 MPMX19_02558: MPMX19_02558 - Putative pyruvate, phosphate dikinase regulatory protein, at 2,674,734 to 2,675,573 _02558 Position (kb) 2673 2674 2675Strain fitness (log2 ratio) -3 -2 -1 0 1at 2673.112 kb on - strandat 2673.170 kb on - strandat 2673.170 kb on - strandat 2673.170 kb on - strandat 2673.170 kb on - strandat 2673.170 kb on - strandat 2673.170 kb on - strandat 2673.170 kb on - strandat 2673.170 kb on - strandat 2673.170 kb on - strandat 2673.170 kb on - strandat 2673.170 kb on - strandat 2673.170 kb on - strandat 2673.170 kb on - strandat 2673.170 kb on - strandat 2674.361 kb on - strandat 2674.361 kb on - strandat 2674.361 kb on - strandat 2674.378 kb on - strandat 2674.378 kb on - strandat 2674.378 kb on - strandat 2674.380 kb on - strandat 2674.380 kb on - strandat 2674.750 kb on + strandat 2674.750 kb on + strandat 2674.750 kb on + strandat 2674.750 kb on + strandat 2674.750 kb on + strandat 2674.750 kb on + strandat 2674.750 kb on + strandat 2674.750 kb on + strandat 2675.085 kb on + strand, within MPMX19_02558at 2675.214 kb on + strand, within MPMX19_02558at 2675.214 kb on + strand, within MPMX19_02558at 2675.214 kb on + strand, within MPMX19_02558at 2675.214 kb on + strand, within MPMX19_02558at 2675.214 kb on + strand, within MPMX19_02558

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Per-strain Table

Position Strand Gene LocusTag Fraction MGL
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2,673,112 - +0.0
2,673,170 - +0.4
2,673,170 - -2.3
2,673,170 - +0.1
2,673,170 - -0.1
2,673,170 - -1.5
2,673,170 - +0.7
2,673,170 - -0.7
2,673,170 - -0.7
2,673,170 - -0.1
2,673,170 - -0.7
2,673,170 - +0.2
2,673,170 - -0.9
2,673,170 - -3.0
2,673,170 - -2.4
2,674,361 - -0.8
2,674,361 - -0.3
2,674,361 - -0.7
2,674,378 - -0.3
2,674,378 - -0.7
2,674,378 - -1.7
2,674,380 - -1.4
2,674,380 - -0.1
2,674,750 + -1.1
2,674,750 + +0.9
2,674,750 + -0.3
2,674,750 + -1.0
2,674,750 + -0.7
2,674,750 + -0.8
2,674,750 + -1.0
2,674,750 + -1.8
2,675,085 + MPMX19_02558 0.42 -1.0
2,675,214 + MPMX19_02558 0.57 -1.1
2,675,214 + MPMX19_02558 0.57 -0.3
2,675,214 + MPMX19_02558 0.57 -1.5
2,675,214 + MPMX19_02558 0.57 +0.2
2,675,214 + MPMX19_02558 0.57 -1.5

Or see this region's nucleotide sequence